• Title/Summary/Keyword: random-effect model

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Selection of Sahiwal Cattle Bulls on Pedigree and Progeny

  • Bhatti, A.A.;Khan, M.S.;Rehman, Z.;Hyder, A.U.;Hassan, F.
    • Asian-Australasian Journal of Animal Sciences
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    • v.20 no.1
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    • pp.12-18
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    • 2007
  • The objective of the study was to compare ranking of Sahiwal bulls selected on the basis of highest lactation milk yield of their dams with their estimated breeding values (EBVs) using an animal model. Data on 23,761 lactation milk yield records of 5,936 cows from five main Livestock Experiment Stations in Punjab province of Pakistan (1964-2004) were used for the study. At present the young A.I bulls are required to be from A-category bull-dams. Dams were categorized as A, B, C and D if they had highest lactation milk yield of ${\geq}$2,700, 2,250-2,699, 1,800-2,249 and <1,800 litres, respectively. The EBVs for lactation milk yield were estimated for all the animals using an individual animal model having fixed effect of herd-year and season of calving and random effect of animal. Fixed effect of parity and random effect of permanent environment were incorporated when multiple lactation were used. There were 396 young bulls used for semen collection and A.I during 1973-2004. However, progeny with lactation yields recorded, were available only for 91 bulls and dams could be traced for only 63 bulls. Overall lactation milk yield averaged 1,440.8 kg. Milk yield was 10% heritable with repeatability of 39%. Ranking bulls on highest lactation milk yield of their dams, the in-vogue criteria of selecting bulls, had a rank correlation of 0.167 (p<0.190) with ranking based on EBVs from animal model analysis. Bulls' EBVs for all lactations had rank correlation of 0.716 (p<0.001) with EBVs based on first lactation milk yield and 0.766 (p<0.001) with average EBVs of dam and sire (pedigree index). Ranking of bulls on highest lactation yield of their dams has no association with their ranking based on animal model evaluation. Young Sahiwal bulls should be selected on the basis of pedigree index instead of highest lactation yield of dams. This can help improve the genetic potential of the breed accruing to conservation and development efforts.

An analysis of depression of the individuals with disabilities using repeated measurement data (반복 측정 자료를 이용한 장애인 우울에 대한 분석)

  • Hong, Haesun;Huh, Jib
    • Journal of the Korean Data and Information Science Society
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    • v.28 no.5
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    • pp.1055-1067
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    • 2017
  • Most previous works to study for the depression of the disabilities in Korea have analyzed the repeated measured data of each individual under the mutually independent assumption. In this study, Korea Welfare Panel data of the disabilities surveyed additionally every three years are analyzed to detect the significant exploratory variables by the linear mixed models. A suitable correlation matrix is considered for the dependency of repeated measurement of each individual. The random effect to reflect the characteristics of the individuals as well as the fixed effect is included in the fitted linear mixed model. By the residual plot of the fixed effect model, the problem that the averages of residuals of each individual do not seem to be around zero is described. Further, the residual plot and the Q-Q plot coming from the selected final model are shown that the problem is modified well.

Endocrine Profiles of Oestrous Cycle in Buffalo: A Meta-analysis

  • Mondal, S.;Suresh, K.P.;Nandi, S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.23 no.2
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    • pp.169-174
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    • 2010
  • A meta-analysis was conducted to summarize the results of studies which have described the profiles of hormones during the oestrous cycle in buffalo using a fixed effect model and a random effect model. Plasma progesterone concentrations were lowest (0.30${\pm}$0.06 ng/ml) during the peri-oestrous phase and increased (p = 0.067) through the early luteal phase to a maximum concentration (1.94${\pm}$0.03 ng/ml) during the mid-luteal phase. Circulating plasma inhibin and estradiol concentrations were lowest (0.31${\pm}$0.01 and 11.04${\pm}$0.13 ng/ml) during the mid-luteal phase, increased through the late luteal phase to maximum concentrations (0.44${\pm}$0.02 and 22.48${\pm}$0.32 ng/ml) during the peri-oestrous phase. Plasma FSH concentrations were lowest during the early luteal phase and increased through the mid-luteal phase to a maximum concentration during the peri-oestrous phase. Peripheral prolactin concentrations were lowest during the late luteal phase and increased to a maximum concentration during the peri-oestrous phase which then declined (p = 0.716) during the early luteal phase. Peripheral plasma cortisol concentrations decreased from 2.68${\pm}$0.14 ng/ml during the early luteal phase to 1.43${\pm}$0.27 ng/ml during the mid-luteal phase (p<0.001) which then increased to 2.06${\pm}$0.17 ng/ml during the late luteal phase. Plasma $T_{5}$ concentrations decreased from the late luteal phase to the peri-oestrous phase (p<0.001) which then increased during the early luteal phase. $T_{4}$ concentrations increased from the late luteal phase to the peri-oestrous phase which then decreased during the early luteal phase.

Developing an Accident Model for Rural Signalized Intersections Using a Random Parameter Negative Binomial Method (RPNB모형을 이용한 지방부 신호교차로 교통사고 모형개발)

  • PARK, Min Ho;LEE, Dongmin
    • Journal of Korean Society of Transportation
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    • v.33 no.6
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    • pp.554-563
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    • 2015
  • This study dealt with developing an accident model for rural signalized intersections with random parameter negative binomial method. The limitation of previous count models(especially, Poisson/Negative Binomial model) is not to explain the integrated variations in terms of time and the distinctive characters a specific point/segment has. This drawback of the traditional count models results in the underestimation of the standard error(t-value inflation) of the derived coefficient and finally affects the low-reliability of the whole model. To solve this problem, this study improves the limitation of traditional count models by suggesting the use of random parameter which takes account of heterogeneity of each point/segment. Through the analyses, it was found that the increase of traffic flow and pedestrian facilities on minor streets had positive effects on the increase of traffic accidents. Left turning lanes and median on major streets reduced the number of accidents. The analysis results show that the random parameter modeling is an effective method for investigating the influence on traffic accident from road geometries. However, this study could not analyze the effects of sequential changes of driving conditions including geometries and safety facilities.

Random Walk Simulation of Atmospheric Dispersion on Surface Urbanization over Complex Terrain (복잡지형에서 도시화에 따른 대기오염 확산에 관한 시뮬레이션)

  • 이순환;이화운;김유근
    • Journal of Korean Society for Atmospheric Environment
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    • v.18 no.2
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    • pp.67-83
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    • 2002
  • The coupled model (SMART) of dynamic meteorology model and particle dispersion model was developed. The numerical experiment on the relationship between change of land use and diffusion behavior in complex terrain was carried out using this model. It tried to investigate the change of particle diffusion behavior and local weather under the condition in which land-land breeze and sea breeze and mountain breeze intermingled. The numerical experiment results are as follows; 1) The more complicated local circulation field of the interaction of sea breeze, mountain breeze and Land -land breeze is formed. Then, the region circulation in which the urbanization is specific by location of the region is strengthened and is weakened. 2) Though in the region with dominant sea breeze, Land-land breeze does not appear directly, the progress of the sea wind to the inland is affected. 3) In the prediction of the air diffusion, emission high quality and accurate information of the emission site are important. That is to say, the dispersion predicting result which emission high quality and small error of the site perfectly vary for Land - land breeze in the effect may be brought about.

A longitudinal data analysis for child academic achievement with Korea welfare panel study data (경시적 자료를 이용한 아동 학업성취도 분석)

  • Lee, Naeun;Huh, Jib
    • Journal of the Korean Data and Information Science Society
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    • v.28 no.1
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    • pp.1-10
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    • 2017
  • Longitudinal data of Korean child academic achievement have been used to find the significant exploratory variables under the assumption of independent repeated measured data. Using the exploratory variables in previous research works, we analyze the linear mixed model incorporating the fixed and random effects for child academic achievement to detect the significant exploratory variables. Korea welfare panel study data observed three times between 2006 and 2012 by additional survey for children. The child academic achievement is evaluated by the sum of academic achievements of Korean, English and Mathematics. We also investigate the multicollinearity and the missing mechanism and select some popular correlation matrices to analyze the linear mixed model.

A Lagrangian Stochastic Model for Turbulent Dispersion

  • Lee, Changhoon;Kim, Byunggu;Kim, Namhyun
    • Journal of Mechanical Science and Technology
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    • v.15 no.12
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    • pp.1683-1690
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    • 2001
  • A Lagrangian stochastic model is adopted for the calculations of turbulent dispersion in turbulent channel flows. Dispersion of a fluid particle and relative dispersion between two particles released at the sane location are investigated and compared with the classical seating relations for homogeneous turbulence. The viscous effect is realized by adding a Browinian random walk to the calculation of the position of a particle. The near-wall accumulation of particles is examined.

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Application of random regression models for genetic analysis of 305-d milk yield over different lactations of Iranian Holsteins

  • Torshizi, Mahdi Elahi;Farhangfar, Homayoun;Mashhadi, Mojtaba Hosseinpour
    • Asian-Australasian Journal of Animal Sciences
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    • v.30 no.10
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    • pp.1382-1387
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    • 2017
  • Objective: During the last decade, genetic evaluation of dairy cows using longitudinal data (test day milk yield or 305-day milk yield) using random regression method has been officially adopted in several countries. The objectives of this study were to estimate covariance functions for genetic and permanent environmental effects and to obtain genetic parameters of 305-day milk yield over seven parities. Methods: Data including 60,279 total 305-day milk yield of 17,309 Iranian Holstein dairy cows in 7 parities calved between 20 to 140 months between 2004 and 2011. Residual variances were modeled by homogeneous and step functions with 7 and 10 classes. Results: The results showed that a third order polynomial for additive genetic and permanent environmental effects plus a step function with 10 classes for the residual variance was the most adequate and parsimonious model to describe the covariance structure of the data. Heritability estimates obtained by this model varied from 0.17 to 0.28. The performance of this model was better than repeatability model. Moreover, 10 classes of residual variance produce the more accurate result than 7 classes or homogeneous residual effect. Conclusion: A quadratic Legendre polynomial for additive genetic and permanent environmental effects with 10 step function residual classes are sufficient to produce a parsimonious model that explained the change in 305-day milk yield over consecutive parities of Iranian Holstein cows.

A study on random access protocol based on reservation access for WDM passive star coupler network (WDM passive star coupler 망에서 예약 방식에 기반한 임의 접근 프로토콜에 관한 연구)

  • 백선욱;최양희;김종상
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.21 no.4
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    • pp.893-910
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    • 1996
  • Recently, there ary many researches on local area multichannel network as WDM technology developes. An ideal media access protocol in a multichannel network is one that shows short access delay under low load and high throughput under heavy load. This paper proposed a new media access protocol for WDM passive star coupler network. The proposed one is a random access rpotocol based on reservation. Access delay is short under low load by using random access method, and high throughput is achieved under heavy load by usin greservation access. Analytic model for the performance analysis of the proposed protocol is developed and performance of the proposed protocol is compared with the previous ones. The effect on the performance of the number of the nodes and channels, and the number of transceivers in each node are analyzed.

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Influence of Internal Resonance on Responses of a Spring-Pendulum System under Broad Band Random Excitation (광대역 불규칙 가진력을 받는 탄성진자계의 내부공진효과)

  • 이원경;조덕상
    • Proceedings of the Korean Society for Noise and Vibration Engineering Conference
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    • 1997.04a
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    • pp.86-94
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    • 1997
  • An investigation into the modal interaction of an autoparametric system under broad-band random excitation is made. The specific system examined is a spring-pendulum system with internal resonance, which is known to be a good model for a variety of engineering systems, including ship motions with nonlinear coupling between pitching and rolling motions. By means of the Gaussian closure method the dynamic moment equations explaining the random response of the system are reduced to a system of autonomous ordinanary differential equations of the first and second moments. In view of equilibrium solutions of this system and their stability we examine the system responses. The stabilizing effect of system damping is also examined.

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