• Asian-Australasian Journal of Animal Sciences
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• 제19권11호
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• pp.1524-1528
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• 2006

A total of 437 animals, comprising lambs aged between 3 and 12 months and adults of either sex of Muzaffarnagari sheep maintained at the Central Institute for Research on Goats, Makhdoom, Farah, Mathura, India were screened to assess the prevalence of Haemonchus contortus infection following natural infection and to identify the various factors affecting faecal egg count (FEC) and packed cell volume (PCV) of ewes and their genetic control. The relationships between FEC, PCV and body weight were also estimated. The prevalence rate for H. contortus infection in the flock under study was 15.7% indicating much lower occurrence of worm infection in lambs up to one year of age. On the other hand, a large proportion i.e., 67.7% of sheep was refractive to natural H. contortus infection. The random effect of sire significantly contributed (p<0.01) variation in log-transformed FEC (LFEC) of ewes. The season of birth had a significant (p<0.01) effect on LFEC of ewes. The lactating ewes had significantly (p<0.01) higher faecal egg counts compared to dry and pregnant ewes. The linear regression effects of the age of ewes on LFEC of animals were significant (p<0.01) in the present study. The heritabilities of LFEC, PCV and body weights of ewes during the course of infection were moderate to high in magnitude and ranged from 0.24 to 0.47. The LFEC of ewes was significantly (p<0.05) and negatively correlated with PCV at both genetic and phenotypic level. The genetic and phenotypic relationships between LFEC and body weights of ewes were -0.26 and -0.06 for this breed. The genetic correlation of PCV and body weight of ewes was positive and high (0.58) and statistically significant (p<0.05) but it was negatively correlated (-0.01) with body weight at the phenotypic level.

• The Korean Journal of Ecology
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• 제18권2호
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• pp.231-241
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• 1995

I examined the relationship between allocations to plant size components such as plant height, total leaf weight, and nuber of branches and to reproductive components such as the number and weight of male and female fowers in three populations of the monoecious, wind-pollinated Ambrosia artemisiifolia. In particular, the two types of gender of plants, phenotypic and functional gender, were related to resource allocation. Mean values of all plant size and reproductive components differed significantly among the three populations. Such inter-population differences did not exist for both photosynthetic and reproductive efforts, Plant size components were mostly positively correlated with reproductive components among plants. However, the relationships between photosynthetic effort and reproductive components were largely negative and inconsistent among populations. The phenotypic gender was much lover than 0.5 in all of the three populations. Pairwise correlations between functional gender and each allocation measurement such as plant size components, reproductive components, photosynthetic effort, and reproductive effort were not consistent across the three populations. These results suggest that the gender of A. artemisiifolia measured as flower production responds sensitively to environmental conditions which might differ whithin as well as among populations.

• 한국작물학회:학술대회논문집
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• 한국작물학회 2020년도 춘계학술대회
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• pp.120-120
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• 2020

Based on the simple sequence repeat (SSR) marker, a Korean wheat core collection were established with 616 wheat accessions. Among them, the SNP genotyping for the entire genome was performed using DNA chip array to clarify the whole genome SNP profiles. Consequently, a total of 35,143 SNPs were found and we re-established a mini-core collection with 247 accessions. Population diversity and phylogenetic analysis revealed genetic diversity and relationships from the mini core set. In addition, genome-wide association study (GWAS) was performed on 19 phenotypic traits; ear type, awn length, culm length, ear length, awn color, seed coat color, culm color, ear color, loading, leaf length, leaf width, seeding stand, cold damage, weight, auricle, plant type, heading stage, maturation period, upright habit, and degree of flag leaf. The GWAS was performed using the fixed and random model circulating probability unification (FarmCPU), which identified 14 to 258 SNP loci related to 19 phenotypic traits. Our study indicates that this Korean wheat mini-core collection is a set of germplasm useful for basic and applied research with the aim of understanding and exploiting the genetic diversity of Korean wheat varieties.

• Journal of Microbiology and Biotechnology
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• 제16권5호
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• pp.748-756
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• 2006

We propose a genome-scale clustering approach to identify whole genome relationships using the functional groups given by the Kyoto Encyclopedia of Genes and Genomes Orthology (KO) database. The metabolic capabilities of each organism were defined by the number of genes in each functional category. The archaeal, bacterial, and eukaryotic genomes were compared by simultaneously applying a two-step clustering method, comprised of a self-organizing tree algorithm followed by unsupervised hierarchical clustering. The clustering results were consistent with various phenotypic characteristics of the organisms analyzed and, additionally, showed a different aspect of the relationship between genomes that have previously been established through rRNA-based comparisons. The proposed approach to collect and cluster the metabolic functional capabilities of organisms should make it a useful tool in predicting relationships among organisms.

• Fisheries and Aquatic Sciences
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• 제15권2호
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• pp.125-135
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• 2012

This study was carried out to understand the correlation between phylogenetic relationships based on 18S rDNA sequences and growth by salinity of Chlorella-like species. The 18S rDNA sequences of 71 Chlorella-like species which were mainly collected from Korean waters were analyzed. The 18S rDNA sequences of Chlorella-like species were divided into three groups (group A, B and C) and group B was further divided into three subgroups (subgroup B-1, B-2 and B-3). Thirty-seven Chlorella-like species in group A grew well at high salinity (32 psu) but the other groups grew well in freshwater. The sequence identities of the species in group A and B were 97.2-99.5%, but those of 6 species in group C ("Chlorella" saccharophila), which contained group I intron sequences region were 75.0-75.4%. Two representative species of each group were cultured at different salinities (0, 16 and 32 psu) to examine the correlation between the molecular phylogenetic groups and the phenotypic characteristics on cell growth and size by different salinities. The size of cell cultured at different salinities varied according to the species of each molecular phylogenetic group. The size of "Chlorella" saccharophila in group C was bigger and more obviously elliptical rather than that of the other Chlorella-like species. Considering the results on molecular and phenotypic characteristics, the group A and B belonged to Chlorellaceae, but group C was distinctly different from them.

• Asian-Australasian Journal of Animal Sciences
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• 제15권11호
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• pp.1527-1530
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• 2002

Factor analysis was applied to the phenotypic correlation matrix of 15 linear type traits (scored linearly 1 to 50 points) for 2035 Holstein cows of 38 sires computed from data collected between 1988 and 1992 in Beijing Shuangqiao Farm and Beijing Xijiao Farm. The 15 linear type traits were stature, body strength, body depth, dairy form, rump angle, rump length, rump width, rear leg side view, foot angle, fore udder attachment, rear udder height, rear udder width, udder cleft, udder depth and teat placement rear view. The first four components accounted for 49.1% of the total variance in type scores. Factor 1 reflected strong cows, with deep bodies, with long and wide rumps, and tall in stature. Factor 2 reflected cows with well attached fore udders, wide rear udders and whose udders were supported by strong suspensory ligaments with close teat placement. Factor 3 reflected cows with good dairyness, sickled in the hocks, high rear udders and udder floors above the hocks. Factor 4 reflected cows with sloping rumps from hooks to pins and with steep foot angle. Principal component and factor analyses are useful to clarify the relationships among type traits.

• Journal of Animal Science and Technology
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• 제58권10호
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• pp.38.1-38.6
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• 2016

Background: Despite the importance of relationships between somatic cell score (SCS) and currently selected traits (milk, fat and protein yield) of Holstein cows, there was a lack of comprehensive literature for it in Iran. Therefore we tried to examine heritabilities and relationships between these traits using a fixed-regression animal model and Bayesian inference. The data set consisted of 1,078,966 test-day observations from 146,765 primiparous daughters of 1930 sires, with calvings from 2002 to 2013. Results: Marginal posterior means of heritability estimates for SCS ($0.03{\pm}0.002$) were distinctly lower than those for milk ($0.204{\pm}0.006$), fat ($0.096{\pm}0.004$) and protein ($0.147{\pm}0.005$) yields. In the case of phenotypic correlations, the relationships between production and SCS were near zero at the beginning of lactation but become increasingly negative as days in milk increased. Although all environmental correlations between production and SCS were negative ($-0.177{\pm}0.007$, $-0.165{\pm}0.008$ and $-0.152{\pm}0.007$ between SCS and milk, fat, and protein yield, respectively), slightly antagonistic genetic correlations were found; with posterior mean of relationships ranging from $0.01{\pm}0.039$ to $0.11{\pm}0.036$. This genetic opposition was distinctly higher for protein than for fat. Conclusion: Although small, the positive genetic correlations suggest some genetic antagonism between desired increased milk production and reduced SCS (i.e., single-trait selection for increased milk production will also increase SCS).

• 한국패류학회지
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• 제26권4호
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• pp.275-283
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• 2010

Many freshwater snail taxa are difficult to identify using morphological traits due to phenotypic plasticity. However, using of molecular DNA marker in combination with morphological traits can provide a reliable means for discriminating among freshwater snail taxa including cryptic species. To discriminate among Korean freshwater snail taxa and resolve their systematic relationships, wesequenced a fragment of mtDNA cytochrome oxidase I (COI) gene from 82 specimens collected from ten different sites distributed along the Korean peninsula. We identified more than seven freshwater snail taxa including cryptic species in Korea. Whereas traditional shell morphology of freshwater snails offers only weak discriminatory power for recognizing 'good' taxa, DNA sequence data provided positive and reliable identification. In addition, a major Semisulcospira clade was clearly separated from the remaining lineages observed including cryptic species. However, a phylogenetic tree inferred from the COI gene data did not fully resolve systematic relationships among pleurocerid taxa in Korea. Establishing more robust shell characteristics for identifying taxa unambiguously and hence improving traditional key shell morphology characters for freshwater snail species is an urgent requirement and will require more rigorous examination of all nominal taxa. While molecular data generated here will be useful for species identification and for describing the systematic relationships among Korean freshwater snails, further analysis will be required.

• 한국산림과학회지
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• 제26권1호
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• pp.13-18
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• 1975

본시험(本試驗)은 죽간재적(竹稈材積)에 영향(影響)하는 형질(形質)을 정확(正確)하게 파악(把握)하기 위(爲)하여 계획(計劃)되었다. 그리고 왕대의 수개형질상호간(數個形質相互間)의 표현형상관(表現型相關), 유전상관(遺傳相關) 및 환경상관(環境相關)을 구명(究明)하고져 공분산분석(共分散分析) 되었으며 Dewey and Lu의 편회귀분석법(偏回歸分析法)으로 각형질(各形質)이 죽간재적(竹稈材積)에 미치는 효과(効果) 즉(即) 경로계수(經路係數)를 산출(算出)하였다. 조사형질(調査形質)은 흉고직경(胸高直徑), 죽간고(竹稈高), 지상고(枝上高), 지하경(地下莖), 절수(節數), 근원직경(根元直徑) 및 죽간재적(竹稈材積)이며 각(各) 형질(形質)의 평균치(平均値), 표준오차(標準誤差), 분산(分散) 및 표준편차(標準偏差)는 제(第)1표(表)와 같고 7개형간(個形間)의 표현형(表現型), 유전(遺傳) 및 환경상관(環境相關)을 분산분석(分散分析)한 결과(結果)는 제(第)2표(表)와 같이 계통간(系統間)에는 고도(高度)의 유의성(有意性)이 인정(認定)되었으나 몇몇 반복간(反覆間)에는 유의성(有意性)이 인정(認定)되지 않았다. 각(各) 형질(形質)의 유전력(遺傳力)을 추정(推定)한바 흉고직경(胸高直徑)과 근원직경(根元直徑)은 유전력(遺傳力)이 높고 기타형질(其他形質)의 유전력(遺傳力)은 제(第)4표(表)에서와 같이 보다 낮으며 환경상관(環境相關)은 표현형상관(表現型相關), 유전상관(遺傳相關)보다 전체적(全體的)으로 낮다. 그리고 죽간재적(竹稈材積)에 대(對)하여 근원직경(根元直徑)과 흉고직경(胸高直徑)은 높은 상관관계(相關關係)를 나타내었다. 형질별(形質別) 상관관계(相關關係), 경로계수(經路係數) 및 죽간재적(竹稈材積)에 미치는 직접(直接), 간접효과(間接効果)는 도표(圖表) 1과 제(第)5표(表)에서 볼 수 있으며 결과적(結果的)으로 본시험(本試驗)에서는 죽간재적수량(竹稈材積收量)은 근원직경(根元直徑)과 흉고직경(胸高直徑)에 의(依)하여 좌우(左右)될 수 있다는 것을 알았다.

• Weed & Turfgrass Science
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• 제5권3호
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• pp.144-154
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• 2016

Goosegrass [Eleusine indica (L.) Gaertn] has been a nuisance to growers in Malaysia due to its increased resistance to commercial herbicides, rapid growth and dissemination, and interference with agricultural practices. In the course of developing an apt integrated management to control goosegrass, more information of this weed is needed. The aim of this study was to look into variations among the goosegrass ecotypes sampled throughout Malaysia from the aspects of genotype and phenotype. Sequence-related amplified polymorphism (SRAP) markers were employed in investigating the genetic diversity and relationships among the 18 goosegrass ecotypes. Consequently, 5 primer combinations amplified 13 fragments with the polymorphism rate of 69.23%. At 74% similarity, the ecotypes were clustered into 6 groups. Phenotypic variability of the goosegrass ecotypes was assessed by observing their morphology, growth and seed traits. Goosegrass ecotypes were sorted into 3 major groups at the genetic distance (DIST) of 0.37. Concurrences of the evaluated genetic distance, ecotypes with the closest and most distant relationships were assembled together in Group I which showed high variation even among ecotypes in the same group. Results obtained thus implied high molecular and morphological variations of the goosegrass ecotypes in Malaysia.