• 제목/요약/키워드: n-gram similarity

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장백 폭포에서 분리한 Acinetobacter koreensis sp. nov.의 보고 (Isolation and Identiffication of Acinetobacter koreensis sp. nov. from Jang-Baek Waterfall)

  • 이하얀;유용규;서필수;이정숙;이근철;이상섭
    • 미생물학회지
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    • 제43권1호
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    • pp.66-71
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    • 2007
  • JB10과 $JB15^{T}$ 균주들은 양강도 삼지연군의 북서부에 위치한 백두산에 있는 장려 폭포의 폭포수에서 분리되었다. 그람 음성의 호기성 균주로서, 약$0.9-1.6{\times}1.5-2.5\;{\mu}m$의 짧은 간균이었다. JB10, $JB15^{T}$ 균주들과 표준 균주들은 생리 생화학 특성 실험에서 서로 차이점을 보였다. JB10과 $JB15^{T}$ 균주들의 16S rDNA 염기서열을 분식한 결과 ${\gamma}-proteobacteria$에 속하였으며, Acinetobacter tandoii 4N13T (97.3%), Acinetobacter haemolyticus $ATCC17906^{T}$ (97.2%), Acinetobacter johnsonii $DSM6963^{T}$ (97.2%), Acinetobaoter junii $DSM6964^{T}$ (96.7%), Acinetobacter schindleri $LUH5832^{T}$ (97.0%) 및 Acinetobacter ursingii $LUH3792^{T}$ (96.6%)와 높은 유사도치 염기서열 상동성을 보여주었다. 그리고 이 외의 표준 균주들과는 93-96%의 염기서열 상동성을 보였다. 균체 지장산 분석 결과주요 지방산으로 $C_{18:1}\;{\omega}9c$$C_{16:1}\;{\omega}7c/C_{15:0}\;iso\;2OH$를 함유하고 있는 것을 확인하였으며, 흥미롭게도 $JB15^{T}$ 균주에서 $C_{19:1}\;iso\;I$이 검출되었다. 이상과 같이 생리 생화학적 특성, 16S rDNA 염기서열 분석 결과 및 균체 지방산분석 결과에서 선별된 JB10과 $JB15^{T}$ 균주들이 표준 균주들과는 다른 특성을 나타내는 것으로 확인되어 JB10 (=KEMC 52-093)과 $JB15^{T}$ ($=KEMC\; 52-094^{T}$) 균주들을 Acinetobacter koreensis sp. nov.로 동정하였다.

Sinomonas terrae sp. nov., Isolated from an Agricultural Soil

  • Hyosun Lee;Ji Yeon Han;Dong-Uk Kim
    • Journal of Microbiology and Biotechnology
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    • 제33권7호
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    • pp.909-914
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    • 2023
  • While searching for the bacteria which are responsible for degradation of pesticide in soybean field soil, a novel bacterial strain, designated 5-5T, was isolated. The cells of the strain were Gram-staining-positive, aerobic and non-motile rods. Growth occurred at 10-42℃ (optimum, 30℃), pH 5.5-9.0 (optimum, pH 7.0-7.5), and 0-2% (w/v) NaCl (optimum, 1%). The predominant fatty acids were C15:0 anteiso, C17:0 anteiso, and summed feature 8 (C18:1 ω7c and/or C18:1 ω6c). The predominant menaquinone was MK-9 (H2). Diphosphatidylglycerol, glycolipids, phosphatidylinositol, and phosphatidylglycerol were the major polar lipids. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain 5-5T is a member of the genus Sinomonas and its closest relative is Sinomonas humi MUSC 117T, sharing a genetic similarity of 98.4%. The draft genome of strain 5-5T was 4,727,205 bp long with an N50 contig of 4,464,284 bp. Genomic DNA G+C content of strain 5-5T was68.0 mol%. The average nucleotide identity (ANI) values between strain 5-5T and its closest strains S. humi MUSC 117T and S. susongensis A31T were 87.0, and 84.3 % respectively. In silico DNA-DNA hybridization values between strain 5-5T and its closest strains S. humi MUSC 117T and S. susongensis A31T were 32.5% and 27.9% respectively. Based on the ANI and in silico DNA-DNA hybridization analyses, the 5-5T strain was considered as novel species belonging to the genus Sinomonas. On the basis of the results from phenotypic, genotypic and chemotaxonomic analyses, strain 5-5T represents a novel speciesof the genus Sinomonas, for which the name Sinomonas terrae sp. nov. is proposed. The type strain is 5-5T (=KCTC 49650T =NBRC 115790T).