• Title/Summary/Keyword: mtCOI

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Population genetic structure based on mitochondrial DNA analysis of Ikonnikov's whiskered bat (Myotis ikonnikovi-Chiroptera: Vespertilionidae) from Korea

  • Park, Soyeon;Noh, Pureum;Choi, Yu-Seong;Joo, Sungbae;Jeong, Gilsang;Kim, Sun-Sook
    • Journal of Ecology and Environment
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    • v.43 no.4
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    • pp.454-461
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    • 2019
  • Background: Ikonnikov's whiskered bat (Myotis ikonnikovi) is found throughout the Korean Peninsula, as well as in Kazakhstan, Russia, Mongolia, China, and Japan. It is small-sized and primarily inhabits old-growth forests. The decrease and fragmentation of habitats due to increased human activity may influence the genetic structure of bat populations. This study was designed to elucidate the population genetic structure of M. ikonnikovi using mitochondrial genes (cytochrome oxidase I and cytochrome b). Results: The results showed that M. ikonnikovi populations from Korea have high genetic diversity. Although genetic differentiation was not detected for the COI gene, strong genetic differentiation of the Cytb gene between Mt. Jeombong and Mt. Jiri populations was observed. Moreover, the results indicated that the gene flow of the maternal lineage may be limited. Conclusions: This study is the first to identify the genetic population structure of M. ikonnikovi. We suggest that conservation of local populations is important for sustaining the genetic diversity of the bat, and comprehensive studies on factors causing habitat fragmentation are required.

Genetic Divergence and Phylogenetic Relationships among the Korean Fireflies, Hotaria papariensis, Luciola lateratis, and Pyrocoelia rufa(Coleoptera: Lampyridae), using Mitochondrial DNA Sequences (미토콘드리아 DNA의 염기서열을 이용한 파파리반딧불이, 애반딧불이 및 늦반딧불이 (딱정벌레목: 반딧불이과)의 유전적 분화 및 계통적 관련)

  • 김익수;이상철;배진식;진병래;김삼은;김종길;윤형주;양성렬;임수호
    • Korean journal of applied entomology
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    • v.39 no.4
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    • pp.211-226
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    • 2000
  • Genetic divergence and phylogenetic relationships among the major Korean fireflies (Hotaria papariensis, Luciola lateralis, and Pyrocoelia rufa) were studied. A portion of mitochondrial COI (403 bp) and 165 rRNA (490~504 bp) genes were sequenced, and the GenBank-registered, homologous 165 rRNA sequences of Japanese fireflies were compared (27 species of Lampyridae, one of Lycidae, and one of Rhgophthalmidae). Greatest DNA and/or amino acid sequence divergence was found when P rufa, belonging to Lampyrinae was compared with H. papariensis and L. lateralis, both belong-ing to Luciolinae, confirming the current taxonomic status of the species. In the PAUP and PHYLIP analyses with 165 rRNA data, grouping of the two geographic samples of H. papariensis with H. tsushimana validate the use of generic name, Hotaria. Nevertheless, lack of sister-group relationship of the two geographic samples of H. papariensis renders further investigation on this group . Although the Korean and Japanese L. lateralis formed a strong monophyletic group, a substantial genetic differentiation was detected between them (2.9% of 165 rRNA gene sequence divergence). Finally, the geographic samples of Korean p. rufa strongly formed a group with Japanese p. rufa, warranting the use of generic name, Pyrocoelia, but the genetic distance observed between the Cheju-Island individual and all others requires further investigation on this subject. Summarized, this study supports the current taxonomic status of the Korean fireflies in that each respectively formed a strong monophyletic group with its own species or genus.

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New Record of Brama dussumieri (Pisces: Bramidae) from Korea, as Revealed by Morphological and Molecular Analyses

  • Lee, Woo Jun;Kim, Jin-Koo
    • Fisheries and Aquatic Sciences
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    • v.18 no.3
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    • pp.311-316
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    • 2015
  • Ten specimens of Brama dussumieri (family Bramidae) were collected from waters off Jeju Island, Busan, and Gangneung, Korea, during 2013-2014. The specimens were characterized by having 58-64 lateral line scales and 13-15 gill rakers. An analysis of 567 base pair sequences of mitochondrial DNA cytochrome c oxidase subunit I showed that sequences in our ten specimens are concordant with those of B. dussumieri from the USA, India, and Japan, although with slight differences (genetic distance = 0.000-0.018). Brama dussumieri was distinguished from the most similar species, Brama japonica, by the number of lateral line scales (57-65 in B. dussumieri vs. 65-75 in B. japonica) and the number of gill rakers (13-15 in B. dussumieri vs. 17-20 in B. japonica). We propose the new Korean name "Wae-sae-da-rae" for B. dussumieri in Korea.

Molecular Identification and Morphological Comparison of Juveniles of Two Collichthys Species (Pisces: Sciaenidae) from the Yellow Sea (황해 강달이속(Collichthys) 치어 2종의 분자동정 및 형태비교)

  • Lee, Soo Jeong;Kim, Jin-Koo
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.47 no.1
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    • pp.79-83
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    • 2014
  • Thirty five juveniles belonging to the genus Collichthys were collected using a bag net at Gang-wha-do, in the eastern Yellow Sea, between July and September, 2012, and identified using combined genetic and morphological methods. We sequenced 316 base pairs of mitochondrial DNA cytochrome c oxidase subunit I of 35 individuals, of which 22 individuals were identified as Collichthys niveatus (12.9-47.6 mm in SL) and 13 as Collichthys lucidus (13.4-40.3 mm SL). Morphologically, the number of occipital crests, an important taxonomic character during the adult stage, could not distinguish the two species during the juvenile stage, but the shape of the first anal fin spine clearly distinguished the two species even among juveniles.

New Record of the Bigtooth Pomfret Brama orcini (Pisces: Bramidae) from Korea

  • Lee, Woo Jun;Kim, Jin-Koo;Kai, Yoshiaki
    • Fisheries and Aquatic Sciences
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    • v.17 no.4
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    • pp.497-501
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    • 2014
  • A single specimen of Brama orcini (267.0 mm standard length, SL), belonging to the family Bramidae, was collected by purse seine from Jeju Strait, Korea, in December 2013. The specimen is characterized by having 16 gill rakers, 54 lateral line scales, and 36 vertebrae. B. orcini is distinguished from the most similar species, Brama japonica, by the number of lateral line scales (52-54 in B. orcini vs. 65-75 in B. japonica). We propose a new Korean name "Keun-bi-neul-sae-da-rae" for B. orcini.

New record of Juvenile Stethojulis trilineata (Perciformes: Labridae) from Korea, Revealed by Molecular Analysis

  • Bae, Seung Eun;Kwun, Hyuck Joon;Kim, Jin-Koo
    • Fisheries and Aquatic Sciences
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    • v.16 no.4
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    • pp.319-323
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    • 2013
  • A single specimen of a juvenile Stethojulis trilineata was first collected from the coastal waters of Ulsan, Korea, in October 2012. This species is characterized by IX dorsal fin spines, 26 lateral line scales, 25 vertebrae, dark spots between the 10th and 11th dorsal fin rays, and a caudal peduncle region. The new Korean name proposed is "Se-jul-mu-ji-gae-nol-rae-gi" for S. trilineata.

Phylogenetic Relationships of the Fireflies Co-occurring in Korean and Japanese Territories Analyzed by Luciferase and Mitochondrial DNA Sequences

  • Kim, Iksoo;Kim, Jong Gill;Jin, Byung Rae
    • International Journal of Industrial Entomology and Biomaterials
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    • v.9 no.2
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    • pp.155-165
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    • 2004
  • In Korean Peninsula including neighboring islands and Japanese Islands identical firefly species or the species belonging to same genera occur together in both territories. These geographic firefly species, nonetheless, have never been subject to taxonomic consideration together until recently, lacking clear species status and phylogenetic relationships. A recent serial study of these fireflies using luciferase gene and/or portions of mitochondrial DNA sequences provided some insight into these populations in terms of validity of species name, phylogenetic relationships, and speciation event. In this article, thus, we have reviewed the recent progress on phylogenetic and/or population genetic aspects of these species, i.e., Hotaria-group fireflies, Luciola lateralis, and Pyrocoelia rufa to better understand the firefly species in these regions.

New report of Diekeana insignis(Gorham, 1892) (Coleoptera: Coccinellidae: Epilachnini) in South Korea

  • Sang Woo Jung;I Chan Shin;Yoon-Ho Kim
    • Journal of Species Research
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    • v.12 no.3
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    • pp.240-243
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    • 2023
  • The genus and species, Diekeana insignis(Gorham), is reported for the first time in Korea. Male adults were collected from Geoje Island and Changwon-si, located in the southern part of South Korea. The species of D. insignis(Gorham) is characterized by the following morphological characteristics: body length about 9.4mm; pronotum with transverse black marking in the middle part; each elytron with seven large black markings; penis long, slightly bent at apical part, truncate at apex; parameres narrow and as long as penis guide; penis guide narrow and pointed at apex. We herein provide habitus photographs, illustrations of morphological characters, male genitalia, and a detailed diagnosis. A partial sequence of the mitochondrial COI gene was obtained and provided mtDNA information for this species.

Systematic Relationships of Korean Freshwater Snails of Semisulcospira, Koreanomelania, and Koreoleptoxis (Cerithiodiea; Pleuroceridae) revealed byMitochondrial Cytochrome Oxidase I Sequences

  • Kim, Woo-Jin;Kim, Dae-Hee;Lee, Jun-Sang;Bang, In-Chul;Lee, Wan-Ok;Jung, Hyung-Taek
    • The Korean Journal of Malacology
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    • v.26 no.4
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    • pp.275-283
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    • 2010
  • Many freshwater snail taxa are difficult to identify using morphological traits due to phenotypic plasticity. However, using of molecular DNA marker in combination with morphological traits can provide a reliable means for discriminating among freshwater snail taxa including cryptic species. To discriminate among Korean freshwater snail taxa and resolve their systematic relationships, wesequenced a fragment of mtDNA cytochrome oxidase I (COI) gene from 82 specimens collected from ten different sites distributed along the Korean peninsula. We identified more than seven freshwater snail taxa including cryptic species in Korea. Whereas traditional shell morphology of freshwater snails offers only weak discriminatory power for recognizing 'good' taxa, DNA sequence data provided positive and reliable identification. In addition, a major Semisulcospira clade was clearly separated from the remaining lineages observed including cryptic species. However, a phylogenetic tree inferred from the COI gene data did not fully resolve systematic relationships among pleurocerid taxa in Korea. Establishing more robust shell characteristics for identifying taxa unambiguously and hence improving traditional key shell morphology characters for freshwater snail species is an urgent requirement and will require more rigorous examination of all nominal taxa. While molecular data generated here will be useful for species identification and for describing the systematic relationships among Korean freshwater snails, further analysis will be required.

Mitochondrial DNA Sequence Variation of the Mason Bee, Osmia cornifrons (Hymenoptera: Apidae)

  • Kim, Hwa-Young;Lee, Kyeong-Yong;Lee, Sang-Beom;Kim, Se-Ryeon;Hong, Mee-Yeon;Kim, Dong-Young;Kim, Ik-Soo
    • International Journal of Industrial Entomology and Biomaterials
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    • v.16 no.2
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    • pp.75-86
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    • 2008
  • In order to understand geographic genetic variation and relationship among populations of the mason bee (Osmia cornifrons Radoszkowsky), which is used as pollinator for apple tree, we sequenced a portion of mitochondrial (mt) COI gene, which corresponds to "DNA Barcode" region (658 bp) from 81 O. cornifrons individuals collected over eight localities in Korea. The sequence data revealed overall moderate to low genetic diversity within species, with a maximum sequence divergence of 0.76%. Geographically, two haplotypes (BAROC01 and BAROC02) were widespread with a frequency of 82.7%, whereas several haplotypes were found in a locality as a single individual, suggesting that haplotype distribution can be summarized as coexistence of a few widespread haplotypes and several regionally restricted haplotypes. Overall, high rate of per generation female migration (Nm=$1.1{\sim}$infinite) and low level of geographic subdivision ($F_{ST}=0{\sim}0.315$) among localities were characteristic. Although two populations (p < 0.026) were genetically subdivided from the remaining localities, no clear polarity was observed. Taken together, the nature of genetic divergence of the mason bee populations is characterized as one that possessing moderate to low genetic diversity, high gene flow, and wide spread haplotypes with ahigh frequency, concordant with the capability of dispersal in connection with the lack of historical biogeographic barriers.