This study examined the flora and community classification in the Forest Genetic Resources Reserves (FGRR) at Mt. Daeseng and Juparyeong to understand the degree of disturbance and the state of forest stand development within the Civilian Control Line (CCL) and to provide baseline data for preservation and management. Of the vascular plants dispersed throughout the study site, there were 98 families, 311 genera, 507 species, 6 subspecies, 65 varieties, and 10 forms, for a total of 588 taxa. Of these, 92 families, 290 genera, 459 species, 6 subspecies, 58 varieties, and 9 forms, for a total of 532 taxa of native plants, were determined to be dispersed around the FGRR at Mt. Daeseng, and 94 families, 259 genera, 364 species, 6 subspecies, 50 varieties, and 8 forms, for a total of 428 taxa of native plants, were confirmed to be dispersed around the FGRR at Juparyeong. There were 21 taxa of endemic Korean plants growing in the FGRR at Mt. Daeseng, with 14 taxa growing in the FGRR at Juparyeong. In terms of rare plants, 26 taxa were confirmed in the FGRR at Mt. Daeseng, and 10 taxa were confirmed in the FGRR at Juparyeong. A Cluster analysis was performed using vegetation data taken from 58 sample plots in each FGRR. The results showed a total of three representative community classifications from Mt. Daeseng: mixed mesophytic forest, Quercus mongolica-Acer pseudosieboldianum, and Quercus mongolica-Fraxinus rhynchophylla communities. Four representative community classifications were observed from Juparyeong: Quercus mongolica-broad leaved forest, Fraxinus rhynchophylla-broad leaved forest, Quercus mongolica, and Quercus communities. On the whole, the species diversity of the communities in Mt. Daeseng FGRR was greater than for the communities in Juparyeong FGRR. At Mt. Daeseng, the mixed mesophytic forest had the highest species diversity index at 1.590, while at Juparyeong, the Fraxinus rhynchophylla-broad leaved forest had the highest species diversity index at 1.319. These study results should serve as useful baseline data for future preservation and management of the demilitarized zone (DMZ) and the surrounding area.