• 제목/요약/키워드: molecular diversity

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A Taxonomic Study on Perinereis nuntia Species Group (Polychaeta: Nereididae) of Korea

  • Park, Tae-Seo;Kim, Won
    • Animal Systematics, Evolution and Diversity
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    • 제23권1호
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    • pp.75-85
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    • 2007
  • A taxonomic study was carried out on the Perinereis nuntia species group of Korea by using morphological and molecular data (mitochondrial cytochrome c oxidase subunit I: mtCOI). Two species, P. mictodonta (Marenzeller, 1879) and P. wilsoni (Glasby and Hsieh, 2006), are recognized and redescribed. In this study, mtCOI gene showed a good resolution as molecular marker for species identification of the P. nuntia species group of Korea.

울릉도 해역의 단각류(갑각류) II (The Marine Amphipod Crustaceans of Ulreung Island, Korea : Part II)

  • 김원;김창배
    • Animal Systematics, Evolution and Diversity
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    • 제7권1호
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    • pp.13-38
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    • 1991
  • This study on the five families (Anamixidae, Colomastigidae, Eophliantidae, Eusiridae, and Hyalidae) of fammaridean amphipods of Ulreung Island was based on the materials collected at eight localities in Ulreung Island. Nine speices of seven genera were identified. Of these, three (Paranamixis denticulus, Colomastix prionotos, and Hyale bisaeta) were new to science. Three species (Ceinina japonica, Eusiroides monoculoides japonicus, and Allorchestes angusta) were new recordsfor Korean waters. These six species were descirbed with illustrations.

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한국산 집게류에 공생하는 요각류 2종 (Two species of Porcellidiidae (Copepoda, Harpacticoida) associated with hermit crabs from Korea)

  • 김사흥;김원
    • Animal Systematics, Evolution and Diversity
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    • 제12권4호
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    • pp.375-387
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    • 1996
  • Two species of the family Porcellidiidae associated with hermit crabs are described from Korean seas. These are Porcellidium similis, new species collected from Pagurus similis, Pagurus pectinatus and Porcellidium brevicaudatum Kicks & Webber collected from Dardanus impressus. The new species resemble closely Porcellidium brevicaudatum in general body form, but is clearly distinguished from Porcellidium vrevicaudatum in that the caudal ramus is weakly oblique in tis distal border and the lobe of leg 5 is more slender.

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Effect of Population Reduction on mtDNA Diversity and Demographic History of Korean Cattle Populations

  • Dadi, Hailu;Lee, Seung-Hwan;Jung, Kyoung-Sup;Choi, Jae-Won;Ko, Moon-Suck;Han, Young-Joon;Kim, Jong-Joo;Kim, Kwan-Suk
    • Asian-Australasian Journal of Animal Sciences
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    • 제25권9호
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    • pp.1223-1228
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    • 2012
  • The population sizes of three Korean indigenous cattle populations have been drastically reduced over the past decades. In this study, we examined the extent to which reduction in populations influenced genetic diversity, population structure and demographic history using complete mitochondrial DNA (mtDNA) control region sequences. The complete mtDNA control region was sequenced in 56 individuals from Korean Black (KB), Jeju Black (JEB) and Korean Brindle (BRI) cattle populations. We included 27 mtDNA sequences of Korean Brown (BRO) from the GenBank database. Haplotype diversity estimate for the total population was high (0.870) while nucleotide diversity was low (0.004). The KB showed considerably low nucleotide (${\pi}$ = 0.001) and haplotype (h = 0.368) diversities. Analysis of molecular variance revealed a low level of genetic differentiation but this was highly significant (p<0.001) among the cattle populations. Of the total genetic diversity, 7.6% was attributable to among cattle populations diversity and the rest (92.4%) to differences within populations. The mismatch distribution analysis and neutrality tests revealed that KB population was in genetic equilibrium or decline. Indeed, unless an appropriate breeding management practice is developed, inbreeding and genetic drift will further impoverish genetic diversity of these cattle populations. Rational breed development and conservation strategy is needed to safeguard these cattle population.

Genetic Diversity Among Waxy Corn Accessions in Korea Revealed by Microsatellite Markers

  • Park, Jun-Seong;Park, Jong-Yeol;Park, Ki-Jin;Lee, Ju-Kyong
    • 한국육종학회지
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    • 제40권3호
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    • pp.250-257
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    • 2008
  • Knowledge of genetic diversity and of the genetic relationships among elite breeding materials has had a significant impact on the improvement of crops. In maize, this information is particularly useful in i) planning crosses for hybrid and line development, ii) in assigning lines to heterotic groups and iii) in plant variety protection. We have used the SSR technique to study the genetic diversity and genetic relationships among 76 Korean waxy corn accessions, representing a diverse collection from throughout Korea. Assessment of genetic diversity among members of this group was conducted using 30 microsatellite markers. Among these 30 microsatellite markers, we identified a total of 127 alleles (with an average of 4.2 and a range of between 2 and 9 alleles per locus). Gene diversity at these 30 microsatellite loci varied from 0.125 to 0.795 with an average of 0.507. The cluster tree generated with the described microsatellite markers recognized two major groups with 36.5% genetic similarity. Group I includes 63 inbred lines, with similarity coefficients of between 0.365 and 0.99. Group II includes 13 inbred lines, with similarity coefficients of between 0.45 and 0.85. The present study indicates that the 30 microsatellite loci chosen for this analysis are effective molecular markers for the assessment of genetic diversity and genetic relationships between Korean waxy corn accessions. Specifically, this study's assessment of genetic diversity and relationships between a set of 76 Korean waxy corn inbred lines will be helpful for such activities as planning crosses for hybrid and line development and association mapping analyses of maize breeding programs in Korea.

Evaluation of the Genetic Relationship among Ten Chinese Indigenous Pig Breeds with Twenty-six Microsatellite Markers

  • Li, Changchun;Wang, Zhigang;Liu, Bang;Yang, Shulin;Zhu, Zhengmao;Fan, Bin;Yu, Mei;Zhao, Shuhong;Li, Kui
    • Asian-Australasian Journal of Animal Sciences
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    • 제17권4호
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    • pp.441-444
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    • 2004
  • The genetic diversities and relationships of 10 Chinese indigenous pig breeds and three exotic pig breeds have been evaluated using 26 microsatellites recommended by the Food and Agriculture Organization & the International Society of Animal Genetics (FAO-ISAG). The allele frequencies, genetic heterozygosity (H) and polymorphism information content (PIC) have been calculated. The results showed that genetic diversity of Chinese indigenous pig breeds is higher than that of the introduced pig breeds. The clustering of 10 breeds is generally consistent with their geographical distribution.

Molecular diversity and morphology of the genus Actinotrichia (Galaxauraceae, Rhodophyta) from the western Pacific, with a new record of A. robusta in the Andaman Sea

  • Wiriyadamrikul, Jutarat;Lewmanomont, Khanjanapaj;Boo, Sung Min
    • ALGAE
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    • 제28권1호
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    • pp.53-62
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    • 2013
  • Actinotrichia is a calcified galaxauracean red algal genus with temperate and tropical distributions in the Indian and Pacific Oceans. Morphological characteristics, along with rbcL and cox1 sequences, were analyzed from specimens collected in the western Pacific and the Indian Oceans. Both rbcL and cox1 data confirmed the occurrence of A. fragilis, A. robusta, and Actinotrichia sp. in this region. The presence of A. fragilis was verified in tropical Indo-Pacific and temperate northeast Asian waters and was characterized by high genetic diversity. Although A. robusta commonly occurs in the East China Sea, we confirmed its presence on rocks and crustose algae in the subtidal zone of three islands in the Andaman Sea. Actinotrichia sp. was similar to A. calcea in morphology and distribution, but with sufficiently different sequences, thus, additional sampling over the range will enable a more realistic evaluation of its taxonomic status.

Diversity of Endophytic Fungi Isolated from Korean Ginseng Leaves

  • Eo, Ju-Kyeong;Choi, Min-Seok;Eom, Ahn-Heum
    • Mycobiology
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    • 제42권2호
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    • pp.147-151
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    • 2014
  • We investigated the diversity of the foliar endophytes of Korean ginseng. Endophytic fungi were isolated from healthy leaves of mountain-cultivated ginseng (MCG) and field-cultivated ginseng (FCG) at 4 sites in Chungbuk Province. A total of 24 species of fungal endophytes were identified using molecular approaches. Additionally, the diversity of these endophytic fungi was compared between MCG and FCG. The major isolated endophytes were Edenia gomezpompae and Gibberella moniliformis in the MCG and FCG samples, respectively. The results suggest that ginseng endophytes have different community structures in different environments, and this understanding may prove useful in ginseng cultivation.

Effects of Organic Farming on Communities of Arbuscular Mycorrhizal Fungi

  • Lee, Si-Woo;Lee, Eun-Hwa;Eom, Ahn-Heum
    • Mycobiology
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    • 제36권1호
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    • pp.19-23
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    • 2008
  • Red pepper (Capsicum annum L.) roots and soils representing different agricultural management practices such as conventional (CON), no-chemical (NOC), and organic farming systems (ORG) were collected from 32 farm field sites in Kyunggi, Korea to investigate the effects of these agricultural practices on arbuscular mycorrhizal (AM) symbiosis. ORG inoculum significantly increased plant growth compared to inoculum from CON and NOC. A community analysis of AM fungi (AMF) using morphological features of spores revealed that AMF spore abundance and species diversity were significantly higher in ORG than in CON. Additionally, a community analysis of AMF colonizing roots using a molecular technique revealed higher AMF diversity in ORG than in CON. These results suggest that agricultural practices significantly influence AM fungal community structure and mycorrhizal inoculum potential.

Diversity and Seasonal Variation of Endophytic Fungi Isolated from Three Conifers in Mt. Taehwa, Korea

  • Kim, Chang-Kyun;Eo, Ju-Kyeong;Eom, Ahn-Heum
    • Mycobiology
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    • 제41권2호
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    • pp.82-85
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    • 2013
  • The needled leaves of three conifer species were collected in Mt. Taehwa during different seasons of the year. Total 59 isolates and 19 species of endophytic fungi were isolated from the leaves and identified using morphological and molecular characteristics. As a result, Shannon index was different in its host plant; Larix kaempferi had a highest value of species diversity. According to the sampling season, 9 species of 19 species were isolated during fall season. The results suggest that the existing of host plant and sampling season are major factors of distribution of endophytic fungi.