• Title/Summary/Keyword: molecular data

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The Calculation of Physical Properties of Amino Acids Using Molecular Modeling Techniques (II)

  • Lee, Myung-Jae;Kim, Ui-Rak
    • Bulletin of the Korean Chemical Society
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    • v.25 no.7
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    • pp.1046-1050
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    • 2004
  • Six physical properties (enthalpy, density, decomposition temperature, solubility in water, pKa values, and hydronium potential) were examined by molecular modeling techniques. The molecular connectivity index, Wiener distance index, and Ad hoc descriptor are employed as structural parameters to encode information about branching, size, cyclization, unsaturation, heteroatom content, and polarizability. This paper examines the correlation of the molecular modeling techniques parameters and the physicochemical properties of amino acids. As a results, calculated values were in agreement with experimental data in the above six physical properties of amino acids and the molecular connectivity index was superior to the other indices in fitting the calculated data.

The 1H and 13C NMR Data of 19 Methoxyflavonol Derivatives

  • Park, Young-Hee;Moon, Byoung-Ho;Lee, Eun-Jung;Hong, Sun-Hee;Lee, Sun-Hee;Lim, Yoong-Ho
    • Bulletin of the Korean Chemical Society
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    • v.29 no.1
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    • pp.81-84
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    • 2008
  • In the present study, we report 1H and 13C NMR data of 19 methoxyflavonol derivatives with different substitution patterns on A- and B-ring. In addition, the influence of the methoxy substituents in A- and B-ring on the 1H and 13C NMR chemical shifts is discussed: the 1H and 13C chemical shifts of and the number of methoxyl groups provided information allowing elimination of many structural isomers from consideration and in certain instances greatly simplified structural elucidation.

Molecular Dynamics Simulation of Droplet Vaporization (분자 동력학을 이용한 액적 기화 시뮬레이션)

  • Nam, Gun-Woo;Yoon, Woong-Sup
    • Proceedings of the KSME Conference
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    • 2003.11a
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    • pp.121-126
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    • 2003
  • A study of argon droplet vaporization is conducted using molecular dynamics, instead of using traditional methods such as the Navier-Stokes equation. Molecular dynamics uses Lagrangian frame to describe molecular behavior in a system and uses only momentum and position data of all molecules in the system. So every property is not a hypothetical input but a statistical result calculated from the momentum and position data. This work performed a simulation of the complete vaporization of a three dimensional submicron argon droplet within quiescent environment. Lennard-Jones 12-6 potential function is used as a intermolecular potential function. The molecular configuration is examined while an initially non-spherical droplet is changed into the spherical shape and droplet evaporates. And the droplet radius versus time is calculated with temperature and pressure profile.

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The Calculation of Physical Properties of Amino Acids using Molecular Modeling Techniques

  • Ui-Rak Kim;Kyung-Sub Min;Bong-Jin Jeong
    • Bulletin of the Korean Chemical Society
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    • v.15 no.2
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    • pp.106-112
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    • 1994
  • Six physical properties (molecular weight, heat capacity, side chain weight, side chain volume, standard entropy and partial molar volume) of amino acids, peptides and their derivatives were examined by molecular modeling techniques. The molecular connectivity index, Wiener distance index and ad hoc descriptor are employed as structural parameters to encode information about branching, size, cyclization, unsaturation, heteroatom content and polarizability. This paper examines the correlation of the molecular modeling techique's parameters and the physicochemical properties of amino acids and their derivatives. As a result, calculated values were in agreement with experimental data in the above six physical properties of amino acids, peptides and their derivatives and the molecular connectivity index was superior to the other indices in fitting the calculated data.

AKARI, SCUBA2 AND HERSCHEL DATA OF PRE-STELLAR CORES

  • Ward-Thompson, D.;Pattle, K.;Kirk, J.M.;Andre, P.;Di Francesco, J.
    • Publications of The Korean Astronomical Society
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    • v.32 no.1
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    • pp.117-121
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    • 2017
  • We show Akari data, Herschel data and data from the SCUBA2 camera on JCMT, of molecular clouds. We focus on pre-stellar cores within the clouds. We present Akari data of the L1147-1157 ring in Cepheus and show how the data indicate that the cores are being externally heated. We present SCUBA2 and Herschel data of the Ophiuchus region and show how the environment is also affecting core evolution in this region. We discuss the effects of the magnetic field in the Lupus I region, and how this lends support to a model for the formation and evolution of cores in filamentary molecular clouds.

Genome wide association study on feed conversion ratio using imputed sequence data in chickens

  • Wang, Jiaying;Yuan, Xiaolong;Ye, Shaopan;Huang, Shuwen;He, Yingting;Zhang, Hao;Li, Jiaqi;Zhang, Xiquan;Zhang, Zhe
    • Asian-Australasian Journal of Animal Sciences
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    • v.32 no.4
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    • pp.494-500
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    • 2019
  • Objective: Feed consumption contributes a large percentage for total production costs in the poultry industry. Detecting genes associated with feeding traits will be of benefit to improve our understanding of the molecular determinants for feed efficiency. The objective of this study was to identify candidate genes associated with feed conversion ratio (FCR) via genomewide association study (GWAS) using sequence data imputed from single nucleotide polymorphism (SNP) panel in a Chinese indigenous chicken population. Methods: A total of 435 Chinese indigenous chickens were phenotyped for FCR and were genotyped using a 600K SNP genotyping array. Twenty-four birds were selected for sequencing, and the 600K SNP panel data were imputed to whole sequence data with the 24 birds as the reference. The GWAS were performed with GEMMA software. Results: After quality control, 8,626,020 SNPs were used for sequence based GWAS, in which ten significant genomic regions were detected to be associated with FCR. Ten candidate genes, ubiquitin specific peptidase 44, leukotriene A4 hydrolase, ETS transcription factor, R-spondin 2, inhibitor of apoptosis protein 3, sosondowah ankyrin repeat domain family member D, calmodulin regulated spectrin associated protein family member 2, zinc finger and BTB domain containing 41, potassium sodium-activated channel subfamily T member 2, and member of RAS oncogene family were annotated. Several of them were within or near the reported FCR quantitative trait loci, and others were newly reported. Conclusion: Results from this study provide valuable prior information on chicken genomic breeding programs, and potentially improve our understanding of the molecular mechanism for feeding traits.

Based on morphology and molecular data, Palisada rigida comb. nov. and Laurencia decussata comb. et stat. nov. (Rhodophyta, Rhodomelaceae) are proposed

  • Metti, Yola
    • ALGAE
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    • v.37 no.1
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    • pp.15-32
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    • 2022
  • Inspecting herbaria collections of Laurencia rigida highlighted frequent misidentifications between L. rigida and L. heteroclada f. decussata, two poorly studied taxa from Australia. Recent collections of DNA material, including from topotype material, allowed for re-examination of these two taxa using molecular techniques. Detailed morphological and molecular analyses based on two markers (rbcL and COI-5P) strongly supported these two taxa as being distinct from each other and requiring nomenclatural changes. Comprehensive morphological analyses highlighted features useful for accurate identifications. Interestingly, L. rigida was found to belong to the genus Palisada with evidence from both the morphology and molecular data. Therefore, this study proposed recognizing L. rigida as Palisada rigida comb. nov. Molecular data for L. heteroclada f. decussata on the other hand supported its separation from L. heteroclada, with too great a molecular distance to be considered a variety. Morphological characters that best separated P. rigida from L. decussata included seven characters; number of pericentral cells per vegetative axial segment, the presence of secondary pit connections, the presence of lenticular thickenings, tetrasporangia alignment, the presence of corps en cerise, holdfast morphology, and overall plant shape. Morphologically, L. heteroclada f. decussata was also separated from L. heteroclada, particularly by the following characteristics; ultimate branchlets morphologies, lower order branch lengths, primary axis and holdfast morphologies. Therefore, it was proposed that L. heteroclada f. decussata is recognized at a species level as L. decussata comb. et stat. nov.