• Korean Membrane Journal
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• 제10권1호
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• pp.20-25
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• 2008

Proton conducting composite membranes were prepared by solution blending of poly(vinylidene fluoride-co-chlorotrifluoroethylene)-graft-poly(sulfopropyl methacrylate) (P(VDF-CTFE)-g-PSPMA) graft copolymer and heteropolyacid (HPA). The P(VDF-CTFE)-g-PSPMA graft copolymer was synthesized by atom transfer radical polymerization (ATRP) using direct initiation of the secondary chlorines of P(VDF-CTFE). FT-IR spectroscopy revealed that HPA nanoparticles were incorporated into the graft copolymer via hydrogen bonding interactions. The water uptake of membranes continuously decreased with increasing HP A concentration up to 45wt%, after which it slightly increased. It is presumably due to the decrease in number of water absorption sites due to hydrogen bonding interaction between the HP A particles and the polymer matrix. The proton conductivity of membranes increased with increasing HPA concentration up to 45wt%, resulting from both the intrinsic conductivity of HP A particles and the enhanced acidity of the sulfonic acid of the graft copolymer.

• 한국응용과학기술학회지
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• 제29권2호
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• pp.278-285
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• 2012

낮은 농도와 높은 농도의 염 용액에서 Poly(styrene sulfonic acid)(PSSA) 겔의 팽윤도에 대한 이온 특성화 효과를 ${SO_3}^-$와 페닐 고리의 수소결합을 통하여 조사하였다. 낮은 농도에서 PSSA 수화 겔의 수축 정도는 ${SO_3}^-$와 물 사이의 수소 결합에 대한 음이온의 불안정화 영향 때문에 음이온에서는 $SCN^-$<$Br^-$<$Cl^-$<$F^-$의 순서를 따랐다. 재 팽윤은 계에서 특별한 상호 작용이 있을 때 높은 농도에서 관찰되었다. 반면 양이온에서 PSSA 겔의 수축은 $Li^+$<$Na^+$<$K^+$<$Ca^{+2}$ 순서를 따랐다. $Ca^{+2}$ 이온에서의 큰 수축 효과는 이가 양이온(+2)에 의한 PSSA 겔의 물리적 가교 때문에 나타난 것으로 보인다. 양이온에서의 수축은 ${SO_3}^-$와 양이온 사이의 상호작용 정도에 비례하였다. PSSA의 팽윤에 대한 이온 특성화 효과는 ${SO_3}^-$와 페닐 고리의 수화 수소결합에 대한 이온의 영향 정도, 양이온과 ${\pi}$ 전자의 상호작용, 소수성 상호작용, 그리고 분산력 등이 복합적으로 작용하여 나타난다고 볼 수 있다.

• Bulletin of the Korean Chemical Society
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• 제29권7호
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• pp.1311-1314
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• 2008

Bacillus halodurans O-methyltransferase (BhOMT) is an S-adenosylmethionine dependent methyltransferase. In our previous study, three dimensional structure of the BhOMT has been determined by comparative homology modeling and automated docking study showed that two hydroxyl groups at 3'- and 4'-position in Bring and structural rigidity of C-ring resulting from the double bond characters between C2 and C3 of flavonoid, were key factors for interaction with BhOMT. In the present study, BhOMT was cloned and expressed. Binding assay was performed on purified BhOMT using fluorescence experiments and binding affinity of luteolin, quercetin, fisetin, and myricetin were measured in the range of $10^7$. Fluorescence quenching experiments indicated that divalent cation plays a critical role on the metal-mediated electrostatic interactions between flavonoid and substrate binding site of BhOMT. Fluorescence study confirmed successfully the data obtained from the docking study and these results imply that hydroxyl group at 7-position of luteolin, quercetin, fisetin, and myricetin forms a stable hydrogen bonding with K211 and carboxyl oxygen of C-ring forms a stable hydrogen bonding with R170. Hydroxyl group at 3'-and 4'-position in the B-ring also has strong $Ca^{2+}$ mediated electrostatic interactions with BhOMT.

• Bulletin of the Korean Chemical Society
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• 제31권8호
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• pp.2147-2150
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• 2010

c-Jun N-terminal kinase 1 (JNK1) is involved in apoptosis, cell differentiation and proliferation. It has been reported that a flavonol, quercetin, induces cell apoptosis and JNK inhibition. In order to understand the interactions of quercetin and JNK1, we performed receptor-oriented pharmacophore based in silico screening and determined a binding model of human JNK1 and quercetin at the ATP binding site of JNK1. 5-OH of A-ring and carbonyl oxygen of C-ring of quercetin participated in hydrogen bonding interactions with backbone of E109 and M111. Additionally, 3'-OH of quercetin formed a hydrogen bond with backbone of I32. One hydrophobic interaction is related on the binding of quercetin to JNK1 with I32, N114, and V158. Based on this model, we conducted a docking study with other 8 flavonols to find possible flavonoids inhibitors of JNK1. We proposed that one flavonols, rhamnetin, can be a potent inhibitor of JNK and 5-OH of A-ring and 3'-OH of B-ring of flavonols are the essential features for JNK1 inhibition.

• Bulletin of the Korean Chemical Society
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• 제35권6호
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• pp.1769-1776
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• 2014

Binding modes of a series of catechol derivatives such as protein tyrosine phosphatase 1B (PTP1B) inhibitors were identified by molecular modeling techniques. Docking, molecular dynamics simulations and free energy calculations were employed to determine the modes of these new inhibitors. Binding free energies were calculated by involving different energy components using the Molecular Mechanics-Poisson-Boltzmann Surface Area and Generalized Born Surface Area methods. Relatively larger binding energies were obtained for the catechol derivatives compared to one of the PTP1B inhibitors already in use. The Molecular Mechanics/Generalized Born Surface Area (MM/GBSA) free energy decomposition analysis indicated that the hydroxyl functional groups and biphenyl ring system had favorable interactions with Met258, Tyr46, Gln262 and Phe182 residues of PTP1B. The results of hydrogen bound analysis indicated that catechol derivatives, in addition to hydrogen bonding interactions, Val49, Ile219, Gln266, Asp181 and amino acid residues of PTP1B are responsible for governing the inhibitor potency of the compounds. The information generated from the present study should be useful for the design of more potent PTP1B inhibitors as anti-diabetic agents.

• Rapid Communication in Photoscience
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• 제4권1호
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• pp.1-8
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• 2015

For understanding molecular mechanisms of photochemical reactions, in particular reactions of proteins with biological functions, it is important to elucidate both the initial reactions from the photoexcited states and the series of subsequent chemical reactions, e.g., conformation, intermolecular interactions (hydrogen bonding, hydrophobic interactions), and inter-protein interactions (oligomer formation, dissociation reactions). Although time-resolved detection of such dynamics is essential, these dynamics have been very difficult to track by traditional spectroscopic techniques. Here, relatively new approaches for probing the dynamics of protein photochemical reactions using time-resolved transient grating (TG) are reviewed. By using this method, a variety of spectrally silent dynamics can be detected and such data provide a valuable description about the reaction scheme. Herein, a blue light sensor protein TePixD is the exemplar. The initial photochemistry for TePixD occurs around the chromophore and is detected readily by light absorption, but subsequent reactions are spectrally silent. The TG experiments revealed conformational changes and changes in inter-protein interactions, which are essential for TePixD function. The TG experiments also showed the importance of fluctuations of the intermediates as the driving force of the reaction. This technique is complementary to optical absorption detection methods. The TG signal contains a variety of unique information, which is difficult to obtain by other methods. The advantages and methods for signal analyses are described in detail in this review.

• Biotechnology and Bioprocess Engineering:BBE
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• 제11권4호
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• pp.357-363
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• 2006

Monolithic molecularly imprinted columns were designed and prepared by an in-situ thermal-initiated copolymerization technique for rapid separation of tryptophan and N- CBZ-phenylalanine enantiomers. The influence of polymerization conditions and separation conditions on the specific molecular recognition ability for enantiomers and diastereomers was investigated. The specious molecular recognition was found to be dependent on the stereo structures and the arrangement of functional groups of the imprinted molecule and the cavities in the molecularly imprinted polymer (MIP). Moreover, hydrogen bonding interactions and hydrophobic interactions played an important role in the retention and separation. Compared to conventional MIP preparation procedures, the present method is very simple, and its macroporous structure has excellent separation properties.

• 통합자연과학논문집
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• 제9권3호
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• pp.161-165
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• 2016

The p21-activated kinase-1 (PAK1) has emerged as a potential target for anticancer therapy. It is overexpressed in ovarian, breast and bladder cancers. This suggests that PAK1 may contribute to tumorigenesis. 4-azaindole derivatives are reported as potent PAK1 inhibitors. The present work deals with the molecular docking studies of 4-azaindoles with PAK1. Probable binding mode of these inhibitors has been identified by molecular modeling. Docking results indicated that hydrogen bonding interactions with Glu345 and Leu347 are responsible for governing inhibitor potency of the compounds. Additionally, Val284, Val328, Met344 and Leu396 were found to be accountable for hydrophobic interactions inside the active site of PAK1.

• 대한화학회지
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• 제67권4호
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• pp.226-235
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• 2023

Chikungunya fever has a high morbidity rate in humans and is caused by chikungunya virus. There are no treatments available until now for this particular viral disease. The present study was carried out by selecting 19 flavonoids, which are available naturally in fruits, vegetables, tea, red wine and medicinal plants. The molecular docking of selected 19 flavonoids was carried out against the Chikungunya virus capsid protein using the Autodock4.2 software. Binding affinity analysis based on the Intermolecular interactions such as Hydrogen bonding and hydrophobic interactions and drug-likeness properties for all the 19 flavonoids have been carried out and it is found that the top four molecules are Chrysin, Fisetin, Naringenin and Biochanin A as they fit to the chikungunya protein and have binding energy of -8.09, -8.01, -7.6, and 7.3 kcal/mol respectively. This result opens up the possibility of applying these compounds in the inhibition of chikungunya viral protein.

• 공업화학
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• 제9권2호
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• pp.185-192
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• 1998

네 종류의 폴리아믹산(PPA)은 서로 다른 구조의 디아민들인 3,3'-diaminodiphenyl sulfone(3,3'-$DDSO_2$), 4,4'-diarrinodiphenyl sulfone(4,4'-$DDSO_2$), 4,4'-methylene dianiline(4,4'-MDA) 및 4,4'-oxydianiline(4,4'-ODA)와 디안하이드라이드인 3,3', 4,4'-benzophenone tetracarboxylic dianhydride (BTDA)를 용매인 DMAc를 이용하여 합성되었다. 이들의 폴리아믹산(PAA)을 이용하여 poly[2,2-(m-phenylene)-5,5'-bibenzimidazole](PBI)와 용액 블렌딩하여 Blend-I, II, III, 그리고 IV로 칭하였으며, 이에 대한 시료를 필름이나 분말로 제조한 PBI/PAA 시스템을 예상된 $T_g$보다 높은 온도에서 열경화시켜 PBI/PI 블렌드로 전환시킨후 PI 합성시 사용된 디아민의 분자구조 변화에 따른 블렌드의 상용성과 그 상호작용의 상대적인 세기를 살폈다. 이로부터 본 연구에서 이용된 네 개의 블렌드들은 상용성을 보였으며, 이들 상용성을 가져다주는 상호작용의 세기는 Blend-III와 Blend-IV가 Blend-I와 Blend-II보다 큼을 보였다. 이와 같이 블렌드에 사용된 PI의 구조변화에 따라 상호작용이 다른 것은 PI합성시에 사용된 디아민의 구조에서 페닐링 사이에 존재하는 linkage인 O나 $CH_2$보다는 $SO_2$가 존재할 때 블렌드를 이루는 두 고분자사이의 상호작용인 수소결합력을 약화시키는 spacer로 작용하였다고 판단된다.