• Title/Summary/Keyword: geographic variations

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Cryptic species diversity of ochtodenes-producing Portieria species (Gigartinales, Rhodophyta) from the northwest Pacific

  • Yang, Mi Yeon;Kim, Myung Sook
    • ALGAE
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    • v.33 no.3
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    • pp.205-214
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    • 2018
  • Red algae in the genus Portieria produce secondary halogenated monoterpenes, which are effective deterrents against herbivores, as secondary metabolites. Portieria hornemannii samples from various sites contain different concentrations of these metabolites, suggesting the existence of genetic diversity and cryptic species. To evaluate the genetic diversity and species distribution of Portieria in the northwest Pacific, we analyzed rbcL sequences of samples collected from Korea, Japan, and Taiwan. The phylogenetic analysis revealed five distinct lineages at the species level. One was recognized as Portieria japonica and the others were cryptic lineages in P. hornemannii. The rbcL haplotypes of P. japonica were genetically fragmented into two subgroups of geographic origin; Korean and Japanese. The four cryptic lineages within P. hornemannii were also geographically structured at a much finer scale. These results suggest that different genetic lineages in Portieria evolved from variable microhabitats, consequently influencing secondary metabolites. Further study is required to resolve the relationships between genetic and secondary metabolite variations in Portieria.

Full-length ORF2 sequence-based genetic and phylogenetic characterization of Korean feline caliciviruses

  • Kim, Sung Jae;Kim, Cheongung;Chung, Hee Chun;Park, Yong Ho;Park, Kun Taek
    • Journal of Veterinary Science
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    • v.22 no.3
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    • pp.32.1-32.8
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    • 2021
  • Feline calicivirus (FCV) is a highly infectious pathogen in cats and widely distributed worldwide with high genetic variation. Full-length open reading frame 2 of 5 from recently isolated Korean FCV isolates were sequenced and compared with those of global isolates. The results of phylogenetic analysis supported dividing global FCV isolates into two genogroups (type I and II) and demonstrated the presence of genogroup II in Korea, indicating their geographic spread in East Asia. High sequence variations in region E of the FCV isolates emphasizes that a novel vaccine needs to be developed to induce protective immunity against various FCV strains.

A Study on the Genetic Variations of Tricholoma matsutake Collected from Eleven Sites of Korea Using I-SSR PCR (I-SSR PCR을 이용한 한국의 11개 주요 산지에서 채집한 송이의 유전변이에 관한 연구)

  • Cho, Duck-Hyun;Lee, Kyung-Joon;Han, Sim-Hee
    • The Korean Journal of Mycology
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    • v.28 no.1
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    • pp.32-37
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    • 2000
  • The objectives of this study was to identify genetic variations of Tricholoma matsutake (S. Ito et Imai) Sing. growing in different geographic ranges in South Korea. Mushrooms were collected during fruiting seasons from 1994 to 1997 from 11 major sites which included four sites (Bonghwa, UIjin, Goryoung, and Chungdo) in Kyongbuk Province, three sites (Changnyung, Hadong, and Hamyang) in Kyongnam Province, two sites (Yangyang and Inje) in Kangwon Province, one site (Goisan) in Choongbuk Province, and one site (Namwon) in Chonbuk Province. Two mushrooms each from three to eight shiros in each sites were collected. Genetic characteristics were analyzed by Inter-Simple Sequence Repeat Polymerase Chain Reaction (I-SSR PCR) method using six primers. With a total of 131 DNA bands identified, Nei's genetic distance and UPGMA tree were constructed. It was estimated that genetic variations between sites amounted to 12.9%, while 87.1% of total variation was explained by variations among individuals within sites. The cluster analysis indicated that the eleven major sites were clustered into four groups, group I (Yangyang, Hamyang, Inje, Hadong and UIjin), group II (Changnyung, Namwon and Chungdo), group III (Goryoung), and group IV (Bonghwa and Goisan). It is concluded that matsutake mushrooms in South Korea have a considerable degree of genetic variations between major sites.

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Application of Spatial Autocorrelation for the Spatial Distribution Pattern Analysis of Marine Environment - Case of Gwangyang Bay - (해양환경 공간분포 패턴 분석을 위한 공간자기상관 적용 연구 - 광양만을 사례 지역으로 -)

  • Choi, Hyun-Woo;Kim, Kye-Hyun;Lee, Chul-Yong
    • Journal of the Korean Association of Geographic Information Studies
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    • v.10 no.4
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    • pp.60-74
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    • 2007
  • For quantitative analysis of spatio-temporal distribution pattern on marine environment, spatial autocorrelation statistics on the both global and local aspects was applied to the observed data obtained from Gwangyang Bay in South Sea of Korea. Global indexes such as Moran's I and General G were used for understanding environmental distribution pattern in the whole study area. LISAs (local indicators of spatial association) such as Moran's I ($I_i$) and $G_i{^*}$ were considered to find similarity between a target feature and its neighborhood features and to detect hot spot and/or cold spot. Additionally, the significance test on clustered patterns by Z-scores was carried out. Statistical results showed variations of spatial patterns quantitatively in the whole year. Then all of general water quality, nutrients, chlorophyll-a and phytoplankton had strong clustered pattern in summer. When global indexes showed strong clustered pattern, the front region with a negative $I_i$ which means a strong spatial variation was observed. Also, when global indexes showed random pattern, hot spot and/or cold spot were/was found in the small local region with a local index $G_i{^*}$. Therefore, global indexes were useful for observing the strength and time series variations of clustered patterns in the whole study area, and local indexes were useful for tracing the location of hot spot and/or cold spot. Quantification of both spatial distribution pattern and clustering characteristics may play an important role to understand marine environment in depth and to find the reasons for spatial pattern.

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Optimization of PRISM Parameters and Digital Elevation Model Resolution for Estimating the Spatial Distribution of Precipitation in South Korea (남한 강수량 분포 추정을 위한 PRISM 매개변수 및 수치표고모형 최적화)

  • Park, Jong-Chul;Jung, Il-Won;Chang, Hee-Jun;Kim, Man-Kyu
    • Journal of the Korean Association of Geographic Information Studies
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    • v.15 no.3
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    • pp.36-51
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    • 2012
  • The demand for a climatological dataset with a regular spaced grid is increasing in diverse fields such as ecological and hydrological modeling as well as regional climate impact studies. PRISM(Precipitation-Elevation Regressions on Independent Slopes Model) is a useful method to estimate high-altitude precipitation. However, it is not well discussed over the optimization of PRISM parameters and DEM(Digital Elevation Model) resolution in South Korea. This study developed the PRISM and then optimized parameters of the model and DEM resolution for producing a gridded annual average precipitation data of South Korea with 1km spatial resolution during the period 2000-2005. SCE-UA (Shuffled Complex Evolution-University of Arizona) method employed for the optimization. In addition, sensitivity analysis investigates the change in the model output with respect to the parameter and the DEM spatial resolution variations. The study result shows that maximum radius within which station search will be conducted is 67km. Minimum radius within which all stations are included is 31km. Minimum number of stations required for cell precipitation and elevation regression calculation is four. Optimizing DEM resolution is $1{\times}1km$. This study also shows that the PRISM output very sensitive to DEM spatial resolution variations. This study contributes to improving the accuracy of PRISM technique as it applies to South Korea.

Estimation of the Temporal and Spatial Variation of Surface Temperature Distribution in the Korean Peninsula using NOAA/AVHRR Data (NOAA/AVHRR 위성자료를 이용한 한반도 표면온도의 시공간적 변동 추정)

  • Suh, Young-Sang;Lee, Gi-Chul;Lee, Na-Kyung;Jo, Myung-Hee
    • Journal of the Korean Association of Geographic Information Studies
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    • v.8 no.3
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    • pp.150-160
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    • 2005
  • In this study, the spatiotemporal surface temperature changes were analyzed in the Korean peninsula. The surface temperature variation was estimated using the split window method and NOAA/AVHRR data in 1991, 1995 and 2000. The ranges of differences in temperature between day time and night time were $3-15^{\circ}C$ around the peninsula. The differences in seasonal variations and yearly fluctuations in big cities were lower than those in rural areas and showed clearly the effects of the urbanization. The characteristics of urban heat affects were further determined based on the day and night time temperature comparison on Busan metropolitan area between these periods. Finally, the future use of this technology was suggested for the urban environmental planning.

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Target Localization Using Underwater Objects in Multistatic Sonar (해저 지형 정보를 이용한 다중 상태 소나의 표적 위치 측정)

  • Lee, Kwanghee;Seo, Ik-Su;Han, Dong Seog
    • Journal of the Institute of Electronics and Information Engineers
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    • v.51 no.2
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    • pp.141-147
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    • 2014
  • This paper proposes a robust localization algorithm and optimal number of receivers considering the detection range of underwater targets. The accuracies of the source position, receiver position and sound velocity are improved using the known positions of underwater objects. The accuracies of these parameters influences the performance of the target localization error. Although the source and receiver positions are obtained by the global positioning system (GPS), there are still positional errors due to GPS and variations in sea temperature. First, the influence of those errors are analyzed mathematically and an algorithm is improved to improve the accuracies of source position, receiver position and sound velocity by using geographic points. The performance of the proposed scheme is evaluated in comparison with the conventional algorithm by computer simulations.

Analysis on the Spatial Accessibility of Mental Health Institutions Using GIS in Gangwon-Do (GIS를 이용한 정신의료기관의 공간적 접근성 분석 - 강원도지역을 대상으로)

  • Park, Ju Hyun;Park, Young Yong;Lee, Kwang-Soo
    • Korea Journal of Hospital Management
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    • v.23 no.2
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    • pp.28-41
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    • 2018
  • Purpose: This study purposed to analyze the spatial accessibility of mental health institutions in Ganwon-Do using Geographic Information System and to suggest policy implications. Methodology: Network analysis was applied to assess the spatial accessibility of mental health institutions in Gangwon-Do. To perform the network analysis, network data set was built using administrative district map, road network, address of mental health institutions in Gangwon-Do. After building network data set, Two network analysis methods, 1) Service area analysis, 2) Origin Destination cost matrix were applied. Service area analysis calculated accessive areas that were within specified time. And using Origin Destination cost matrix, travel time and road travel distance were calculated between centroids of Eup, Myeon, Dong and the nearest mental health institutions. Result: After the service area analysis, it is estimated that 19.63% of the total areas in Gangwon-Do takes more than 60 minutes to get to clinic institutions. For hospital institutions, 23.08% of the total areas takes more than 60 minutes to get there. And 59.96% of Gangwon-do takes more than 30 minutes to get to general hospitals. The result of Origin-Destination cost matrix showed that most Eup Myeon Dong in Gangwon-Do was connected to the institutions in Wonju-si, Chuncheon-si, Gangneung-si. And it showed that there were large regional variation in time and distance to reach the institutions. Implication: Results showed that there were regional variations of spatial accessibility to the mental health institutions in Gangwon-Do. To solve this problem, Several policy interventions could be applied such as mental health resources allocation plan, telemedicine, providing more closely coordinated services between mental health institutions and community mental health centers to enhance the accessibility.

Geographic Variation of Flowering Response to Daylength in Perilla frutescens var. frutescens in East Asia

  • Lee, Ju-Kyong;Ohmi Ohnishi
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.46 no.5
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    • pp.395-400
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    • 2001
  • We investigated the variations of the flowering response to daylength in Perilla crop (var. frutescens). Seventeen accessions of Perilla crop and one accession of weedy type of var. crispa from China, Korea and Japan were cultivated under three daylength conditions, i.e., short-days, natural daylength and long-days. Most accessions of Perilla crop from China, Korea and Japan were divided into three types, early maturing type, intermediate maturing type and late maturing type by their natural flowering habit. In most of the accessions used, the flowering habit was significantly accelerated by short-day conditions and was delayed by long-day conditions. All the accessions of Perilla crops flowered within 57 days under the 10 hrs light treatment, whereas they did not flower at all even at 170 days after sowing under the 16 hrs light treatment. Thus, this finding suggested that there is a relationship between the types of flowering response to daylength and the geographical distribution which determines the planting season in traditional cultivation practices of Perilla crops. Positive correlation was observed between days to flowering and plant height or internode number in both the short-day and natural daylength conditions. Whereas, correlation was negative between days to flowering and inflorescence length or floret number in natural daylength condition, but it was positive in the short-day condition. Therefore, the daylength condition is considered as the most important environmental factor for flowering habit and morphological characters of Perilla crops. Flowering habit is considered as an important key character for the study of geographical differentiation of Perilla crop in East Asia.

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Relationships between Spatio-temporal Distribution of Cochlodinium polykrikoides Red Tide and Meso-scale Variation of Oceanographic Environment around the Korean Waters (C. polykrikoides 적조의 시공간분포와 중규모 해양환경 변동간의 관계성)

  • Suh, Young-Sang;Jang, Lee-Hyun;Kim, Hak-Gyoon
    • Journal of the Korean Association of Geographic Information Studies
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    • v.6 no.3
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    • pp.139-150
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    • 2003
  • There was a close relationship between spatio-temporal distribution of Cochlodinium polykrikoides red tide and meso-scale variation of oceanographic environment around the Korean waters. Oceanographic conditions of Narodo island, where red tide usually first occurred during summer seasons were formation of the thermohaline frontal zone from 1995 to 2001. Huge C. polykrikoides red tides were observed in every uneven year during the past 7 years (1995~2001) and quasi-biennial oscillation also occurred in the oceanographic variations of sea surface temperature and salinity in the northern part of the East China Sea during the same years. The distribution area and moving pattern of C. polykrikoides red tides were definitely depended on the temporal and spatial variation of upwelling cold water originated form the southeastern coast of the Korean peninsula in summer season.

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