• Title/Summary/Keyword: gentic analysis

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A small recA analog in streptococcus pneumoniae that is not induced during competence for genetic transformation (폐염균에서 작은 RecA 유사체의 검출 및 형질전환 때의 비유도성 확인)

  • ;Morrison, Donald A.
    • Korean Journal of Microbiology
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    • v.27 no.2
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    • pp.162-167
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    • 1989
  • Western blot analysis of lysates of Streptococcus pneumoniae revealed a single polypeptide species that cross-reacted with E. coli RecA antiserum. The apparent molecular weight of this putative RecA protein analog (RecAsp) was 24, 000 smaller than any other known RecA analogue. The RecAsp protein was present at the same level in competent and non-competent cells.

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Estimation of software project effort with genetic algorithm and support vector regression (유전 알고리즘 기반의 서포트 벡터 회귀를 이용한 소프트웨어 비용산정)

  • Kwon, Ki-Tae;Park, Soo-Kwon
    • The KIPS Transactions:PartD
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    • v.16D no.5
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    • pp.729-736
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    • 2009
  • The accurate estimation of software development cost is important to a successful development in software engineering. Until recent days, the model using regression analysis based on statistical algorithm and machine learning method have been used. However, this paper estimates the software cost using support vector regression, a sort of machine learning technique. Also, it finds the best set of optimized parameters applying genetic algorithm. The proposed GA-SVR model outperform some recent results reported in the literature.

Comparison of Mash and Pelleting Feed Production Cost (분말사료와 Pallet 사료의 생산비 비교)

  • Park, Kyung Kyu;Chung, D.S.;Behnke, K.;Kim, In Soo
    • Current Research on Agriculture and Life Sciences
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    • v.3
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    • pp.55-61
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    • 1985
  • In an attempt to compare the mash and pelleting costs, individual production costs of eash mash and pelleting are analyzed. For the analysis, Park's model (1982) are used. According to the results of the analysis, the following conclusions are made. 1. Total energy cost for pelleting is 4 times higher than that for mash feed production. 2. Labor cost for pelleting is 20 % higher than that of mash feed. 3. Capital requirements for pelleting feed mill is approximately 20 % higher than that for mash feed mill when feed mill size is 200 ton/day. 4. Total production cost for pelleting is from 30 % to 50 % higher than that for mash feed when mill size ranges from 100 ton/day to 400 ton/day.

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Monitoring of Gentic Variability in Dicofol-susceptible, Dicofol-resistant, and its Reverse-selected Strains of Tetranychus urticae by RAPD-PCR

  • Song, Cheol;Park, Jin-Hee;Kim, Gil-Hah;Kwon, O-Yu;Cho, Kwang-Yun
    • Journal of Life Science
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    • v.9 no.1
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    • pp.14-16
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    • 1999
  • Genetic variability was monitored by random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR) in dicofol-susceptible (S), dicofol-resistant (R) and its reverse-selected (RS) strains of two-spotted spider mite, of Tetranychus urticae. Before the reverse-selection, RS strain, selected reversely from R strain, was 23-fold resistance ratio at {TEX}$LC_{50}${/TEX} to S strain. The resistance was started to in incline slowly to the resistance level of S strain after one year, and the resistance ratio was 4-fold in the 7 years after then. PCR-amplification of T. urticae DNA showed polymorphism in the amplifications with 12 primers in 100 kinds of arbitrary DNA sequences. RAPD amplification with primer OPR-12 (5`-ACAGGTGCGT-3`) showed amplified bands at 1,000 base pair in the S-and RS-strain, and at 350 base pair in R-strain. The results of polymorphism are genetic variabilities derived from development and selection of resistance in each strain. The peculiarly amplified fragments were guessed to participate in dicofol resistance. From the analysis of genetic similarity, it is inferred the gene composition of S-and RS-strain is much closer than that of R-strain.

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Genetic and Morphological Variation of the Genus Liobagrus in Korea (한국산 퉁가리속 어류의 유전 및 형태적 변이에 관한 연구)

  • 양서영;서영목
    • Animal Systematics, Evolution and Diversity
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    • v.2 no.2
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    • pp.1-12
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    • 1986
  • Genetic and morphological variation among seven populations of two species of the genus Liobagrus that had been collected from six separate river systems in Korea were analyzed by means of starch electrophoreiss and discriminant function analysis . The degree of genic variation among three population of L.andersoni was P=21.3%, H=0.068 , and that of four population of L.mediadiposalis was P=16.3%, H=0.560. Rogers' gentic similarity coefficient (S) of L.andersoni and L.mediadiposalis were S=0.592 , S=0.675 respectively. In morphometric characters of L. andersoni, the population from Kum River was distinctly different from other conspecific populations.

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Perspectives of Utilization and Function of Antioxidants in Sesame (참깨 항산화물질의 기능과 함량 및 이용 전망)

  • Ryu Su Noh;Kang Chul Whan;Lee Jung Il;Lee Seung Tack;Kim Kwan Su;Ahn Byung Og
    • KOREAN JOURNAL OF CROP SCIENCE
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    • v.41 no.spc1
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    • pp.94-109
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    • 1996
  • Antioxidants of sesame have been reported to cure and prevent various diseases by means of diverse physiological activities, prevention of acidification in organisms, prevention of acidification and decay of lipids, cholesterol depression, preventive effects on chemical breast cancer, skin beauty and senescence inhibition, and so on. Recognizing their significance to health and disease prevention, researchers in Japan and America have given so much importance to study antioxidants in the last decade. In addition, they are actively pursuing studies on production, processing for food use and development of new varieties that have high antioxidant content. Recently, researchers in Korea have shown the same interest and have conducted similar studies, however, the importance of the following basic issues must be recognized to guide in future activites : First, improvement of sesame quality must be done to raise the contents of not only the fat and fatty acid but also sesamin, sesamolin and sesaminol glucoside. For the use of these components it is necessary to study the gentic pattern and individual selections developed from minimum sample size and fast lipid analysis techniques. Second, sesaminol of sesame has a remarkable function in preventing acidification and so sesame can be utilized as a food that prevents or delays aging caused by automatic acidification of fat. Therefore, for maximum medicinal benefit from sesame oil there is a need to develop food materials having new medicinal functions. Third, the sesamin and sesamolin content of sesame germplasms collected in Korea showed lower ranges of $0.04\~0.68$ percent and $0.08\~0.68$ percent respectively, while Japanese germ-plasm showed 1.9 percent maximum content of seasmin. Thus, germplasm collection and analysis of worldwide genetic resources are urgently needed.

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Hypocholesterolemic Soybean Peptide (IAVP) Inhibits HMG-CoA Reductase in a Competitive Manner

  • Pak, Valeriy V.;Koo, Min-Seon;Lee, Na-Ri;Oh, Su-Kyung;Kim, Myung-Sunny;Lee, Jong-Soo;Kwon, Dae-Young
    • Food Science and Biotechnology
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    • v.14 no.6
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    • pp.727-731
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    • 2005
  • Synthesized Ile-Ala-Val-Pro (IAVP) peptide, which has the highest hypocholesterolemic effect among a number of synthesized derivatives of Ile-Ala-Val-Pro-Gly-Glu-Val-Ala (IAVPGEVA) isolated from 11S globulin of soy protein by pepsin digestion, was selected for investigation in the present study. Using a recombinant Syrian hamster 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR), we studied in detail the inhibition of this enzyme by IAVP and compared the action of this peptide to that of lovastatin, a known competitive inhibitor of this enzyme. The concentration of IAVP required for 50% inhibition ($IC_{50}$) of HMGR activity in given experimental conditions was $340\;{\mu}M$. Kinetic analysis revealed that the studied peptide is a competitive inhibitor of HMGR with respect to both 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) and nicotinamide adenine dinucleotide phosphate (NADPH), with an equilibrium constant of inhibitor binding ($K_i\;=\;[E][I]/[EI]$) of $61{\pm}1.2\;{\mu}M$ and $157{\pm}4.4\;{\mu}M$, respectively. At the same conditions, $K_i$ and $IC_{50}$ for lovastatin were $2.2{\pm}0.1\;nM$ and 12.5 nM, respectively. Thus, the given peptide interacts with HMGR as a bisubstrate, consequently blocking access of both substrates to the active sites. The achieved results suggest the design of new peptide sequences having a higher relative affinity to binding sites of this enzyme and an enhancement of their hypocholesterolemic properties.

Resistance of Corn to Maize Dwarf Mosaic Virus: Genetic Analysis by Diallel Cross (옥수수의 위축모자이크바이러스에 대한 저항성: 이면교배에 의한 유전분석)

  • Heo N. Y.;Kim D. U.;Ryu G. H.;Kang C. S.;Lee K. H.
    • Korean Journal Plant Pathology
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    • v.1 no.2
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    • pp.136-140
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    • 1985
  • The studies were conducted to test for combining ability and to evaluate resistance to maize dwarf mosaic virus (MDMV) by diallel crosses of corn inbreds. For the genetic analysis of the resistance, a diallel set of crosses without reciprocals was made using the eight corn inbreds which had different degrees of resistance to MDMV. Twenty eight $F_1$ hybrids showed different symtom severity. the highest value is 3.63 and the lowest value is 1.87 in disease ratings (1-4). General combining ability (GCA) for resistance to MDMV was highly significant, but specific combining ability (SCA) was not significant. Two inbreds, A632 and KS15 showed negative GCA effects, indicating that these parents were good general combiners and that resistance to MDMV increased in hybrid combinations. Hyrid A632 x KS5, showed the highest negative SCA effect and several combinations showed negative SCA effects. The analysis of parent-offspring covariance (Wr) and array variance (Vr), suggest that there may be many dominant genes in the resistant inbreds and many recessive genes in the susceptible inbreds.

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Heritability, Genetic Correlation and Path Coefficient Analysis of Economic Characters in the Silkworm, Bombyx mori (누에의 실용형질에 대한 유전력, 유전상관 및 경로계수의 분석)

  • 정원복
    • Journal of Sericultural and Entomological Science
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    • v.31 no.2
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    • pp.91-101
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    • 1989
  • This experiment was carried out to analyze genetic parameters for the selection of silkworm by diallel-crossing with three Japanese and four Chiness silkworm races. Heritability, genetic correlation and path coefficient were calculated as the statistical parameters to evaluate direct or indirect effects of various gentic characters on bave weight. The heritabilities of fifth instar period, cocoon weight, cocoon layer weight, cocoon layer ration, fibroin contents, boiling off ratio and bave weight were over 76.65% in both F1 and F2 generations. There were positive coefficients in both phenotypic and genotypic correlations between male and female of both F1 and F2 generations. The latter showed greater values in general. The correlation between bave weight and the characters of cocoon weight, cocoon layer weight, cocoon layer ratio, fibroin contents were over 0.727 in both sexes of F1 and F2. Therefore, these results suggest that above characters would be useful for genetic selection of silkworms. As result of path coefficient analysis, there was a direct effect with path coefficient value of 0.991 between bave weight and F1 female cocoon layer weight, and with the value of 0.803 between bave weight and F1 male cocoon weight. In F2 the effect showed 0.938 between bave weight and male cocoon weight and cocoon layer weight had greater influence on direct or indirect effects (in path coefficient) than the others.

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Genetic polymorphisms of monoamine oxidase(MAO) B and serotonin transporter receptor(5-HTTR) influence variability in neurobehavioral symptoms by n-hexane exposur (n-Hexane 노출에 의한 신경행동학적 증상에 monoamine oxidase(B)와 serotonin transporter receptor 유전자다양성의 영향)

  • Kim, Ki-Woong
    • Journal of Korean Society of Occupational and Environmental Hygiene
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    • v.21 no.2
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    • pp.116-122
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    • 2011
  • Human occupational exposure to n-hexane has been associated with neurobehavioral symptoms such as depression, irritablity, acute irritation symptom, concentration disturbance and fatigue. Effects of monoamine oxidase (MAO) B and serotonin transporter receptor (5-HTTR) polymorphisms on the neurobehavioral symptoms were investigated in 70 male workers from TV and computer monitor manufacturing plants exposed to n-hexane. Neurobehavioral symptoms were assessed through a self-reported questionnaire and ambient level of n-hexane was measured by NIOSH method. Blood and urine were collected from each workers to determine the MAO(B), 5-HTTR and urinary 2,5-hexanedione(2,5-HD). The mean concentration of volatile n-hexane was $18.8{\pm}28.8ppm$ and that of urinary 2,5-HD was $1.07{\pm}1.47mg/g$ creatinine. Statistically significant associations with sexual disturbance were age and smoking. The frequencies of MAO(B) AA, AG and GG were 18.6%, 45.7% and 35.7%, respectively, and the frequencies of 5-HTTR ll, ls and ss genotype were 82.9%, 15.7% and 1.4%, respectively. MAO (B) gene polymorphisms had susceptibility to the neurobehavioral symptoms such as fatigue, concentration disturbance, irritability and acute irritation symptom and 5-HTTR gene polymorphism had susceptibility to the sleep disturbance and acute irritation symptom. On multiple logistic regression analysis for the neurobehavioral symptoms, memory disturbance was significantly associated with smoking(OR=6.752, 95% CI=37.46) and drinking(OR=4.033, 95% CI=1.252-12.98), emotional lability was MAO(B) genotype(OR=0.412, 95% CI=0.170-0.996), fatigue (OR=1.011, 95% CI=1.000-1.021) and acute irritation(OR=0.990, 95% CI=0.981-1.000) were working duration and sexual disturbance were significantly associated with age(OR=1.208, 95% CI=1.042-1.399), ambient n-hexane(OR=1.077, 95% CI=1.005-1.154) and 2,5-HD(OR=0.186, 95% CI=0.041-0.841). This finding implies that the MAO (B) and 5-HTTR polymorphisms may affect susceptibility for specific neurobehavioral symptoms associated with n-hexane exposure in workers.