• 한국작물학회:학술대회논문집
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• 한국작물학회 2022년도 추계학술대회
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• pp.252-252
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• 2022

Genotype-by-environment interaction (GEI) refers to the comparative response of genotypes to different environments conditions. Thus, understanding GEI is a fundamental component for selecting superior genotypes for breeding programs. The significance of utilizing early maturing cultivars not only provides flexibility in planting dates, but also serves as an effective strategy to reduce methane emission from the paddy fields. In this study, we conducted multi-environment trials (METs) to evaluate yield-related traits such as culm length, panicle length, panicle number, spikelet per plant, and thousand grain weight. A total of eighty-one Korean commercial rice cultivars categorized as early maturing cultivars, were cultivated in three regions, two planting seasons for two years. The genotype main effect plus genotype-by-environment interaction (GGE) biplot analysis of yield-related traits and grain yield explained 70.02-91.24% of genotype plus GEI variation, and exhibited various patterns of mega-environment delineation, discriminating ability, representativeness, and genotype rankings across the planting seasons and environments. Moreover, simultaneous selection using weighted average of absolute scores from the singular value decomposition (WAASB) and multi-trait stability index (MTSI) revealed six highly recommended genotypes with high stability and crop productivity. The winning genotypes under specific environment can be utilized as useful genetic materials to develop regional specialty cultivars, and recommended genotypes can be used as elite climate-resilient parents to improve yield-potential and reduce methane emission as part to accomplish carbon-neutrality.

• 한국균학회소식:학술대회논문집
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• 한국균학회 2015년도 춘계학술대회 및 임시총회
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• pp.28-28
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• 2015

Clubroot disease caused by Plasmodiophora brassicae induces severe losses of cruciferous vegetables worldwide. To control clubroot of Chinese cabbage, many CR (clubroot resistance) F1 hybrid cultivars have been bred and released in Korea, China and Japan. In this study, we determined the race of P. brassicae 12 field isolates, which collected from 10 regions in Korea, using Williams' differential varieties including two cabbage ('Jersey Queen', 'Badger Shipper') and two rutabaga ('Laurentian', 'Whilhelmsburger'). By Williams' differential varieties, 12 clubroot pathogens were assigned into one (GN2), two (HS and YC), two (HN1 and HN2), three (DJ, KS and SS) and four (GS, GN1, JS and PC) isolates for races 1, 2, 4, 5 and 9, respectively. In addition, the degree of resistance of 45 CR cultivars that were from Korea, China and Japan was tested with the 12 isolates. The 45 CR cultivars of Chinese cabbage were differentiated into three genotypes according to their resistance responses. Even though the 12 P. brassicae isolates were same race by Williams' differential varieties, three CR genotypes showed different resistance response to the isolates. These results indicate that races of P. brassicae by Williams' differentials were not related with resistance of CR cultivars, and three CR genotypes represented qualitative resistance to the P. brassicae isolates. CR genotype I including 'CR-Cheongrok' showed resistance to GN1, GN2, JS, GS, HS, DJ and KS isolates and susceptibility to YC, PC, HN1, HN2 and SS isolates. And CR genotype II such as 'Hangkunjongbyungdaebaekchae' was resistant to GN1, GN2, JS, GS, HS, YC, PC and HN1 and susceptible to DJ, KS, SS and HN2. CR genotype III including 'Chunhajangkun' and 'Akimeki' represented resistance to 10 isolates except for SS and HN2 isolates. Based on these results, we selected 'CR-Cheongrok', 'Hangkunjongbyungdaebaekchae', and 'Chunhajangkun' as a representative cultivar of three CR genotypes and 'Norangkimjang' as a susceptible cultivar. Furthermore, we investigated the resistance of 15 lines of Chinese cabbage, which were provided by seed companies, to 11 isolates except for HN1 of P. brassicae. The results showed that three lines were susceptible to all the tested isolates, whereas five, four, and three lines represented the similar responses corresponding to the CR genotypes I, II, and III, respectively; there is no line of Chinese cabbage showing different resistance patterns compared to three CR genotypes. In particular, line 'SS001' showing resistance responses of CR genotype II was a parent of 'Saerona' that have been commercialized as a CR $F_1$ cultivar of Chinese cabbage. Together, we divided 12 isolates of P. brassicae into 4 races, designated by wild type, mutant type 1, mutant type 2, and mutant type 3. Wild type including GN1, GN2, JS, GS, and HS isolates of P. brassicae was not able to infect all the cultivars of three CR genotypes, whereas, mutant type 3 such as SS and HN2 isolates developed severe clubroot disease on all the CR genotype cultivars. To mutant type 1 including DJ and KS isolates, CR genotypes I, II and III were resistant, susceptible and resistant, respectively. In contrast, to mutant type 2 including YC, PS, and HN1 isolates, CR genotypes I, II and III showed susceptibility, resistance and resistance, respectively. Taken together, our results provide the extended knowledge of classification of P. brassicae races, which is useful information for the breeding of resistant crops, with a suggestion that 'Norangkimjang', 'CR-Cheongrok', 'Saerona' and 'Chunhajangkun' cultivars of Chinese cabbage could be used as new race differentials of P. brassicae for clubroot disease assay.

• Annals of Clinical Microbiology
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• 제21권4호
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• pp.86-91
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• 2018

배경: PANA RealTyper HPV kit (PANAGENE, Korea; PANA RealTyper)는 multiplex real-time PCR과 melting curve analysis를 이용하여 human papillomavirus (HPV)의 유전자형을 검출한다. 본 연구에서는 PANA Real Typer와 AdvanSure HPV GenoBlot assay (LG Life Sciences, Korea; AdvanSure assay)를 비교하였다. 방법: 자궁경부암 검진을 받은 환자에서 채취한 검체를 60개 수집하였다. AdvanSure assay와 PANA RealTyper는 고위험군 HPV 20종을 검출할 수 있다. 저위험군 HPV의 경우 AdvanSure assay는 15종을, PANA RealTyper는 2종의 유전자형을 구별할 수 있고 18종의 유전자형을 검출할 수 있다. 결과: 총 60개 중 40개 검체에서 54개의 고위험군 유전자형이 검출되었으며 18개 검체에서 20개의 저위험군 유전자형이 검출되었다. 고위험군에서 두 방법 간 일치율은 94.4-100%였다. PANA Real Typer에서만 양성으로 검출된 9개 유전자형 중 7개(HPV 16 (n=1), 39 (n=1), 52 (n=1), 58 (n=2), 68 (n=2))은 진양성으로 판별되었다. AdvanSure assay에서만 양성으로 나온 4개 유전자형 중 3개는 HPV 59였다. 저위험군에서 AdvanSure assay에서 검출된 19개 유전자형 중 HPV 6 2개, HPV 11 1개였다. HPV 6 중 한 개는 PANA RealTyper에서만 양성이었다. 결론: PANA RealTyper는 AdvanSure assay와 동등한 검출력을 보였으며, 임상 검사실에서 HPV 유전자형 검사에 유용하게 쓰일 수 있을 것으로 생각한다.

• International Journal of Industrial Entomology and Biomaterials
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• 제4권1호
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• pp.69-76
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• 2002

Mustard aphid, Lipaphis erysimi(Kalt.) plays a key role in determining the productivity of rapeseed-mustard. This pest alone attributes 30-70% losses in yield potential in different agro climatic zones with a mean loss of 54.2% in India. Considering the extent of damage caused by the pest, the present experiment was conducted at Pulses and Oilseeds Research Station during 1992-93 to 1994-95 to study the migratory nature of mustard aphid by trapping them in yellow colour pan tray and their simultaneous growth and development on three different genotypes. The temperature during noon hours is the predominant factor to govern the appearance of alate mustard aphid in rapeseed-mustard field. Stepwise regression analysis revealed that temperature and relative humidity played an important role for its development. The variety RW white flower glossy stem harboured minimum number of aphid in comparison to other two varieties B 9 and T6342. The population reached a peak of 61.28 aphids/10 cm central twig during $6^{th}$ standard week irrespective of varieties.

• The Plant Pathology Journal
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• 제26권3호
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• pp.260-263
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• 2010

Scald, caused by Rhynchosporium secalis has been the major yield-reducing factor for barley production during the last decade. In this study, pathogenic groups of R. secalis were identified to obtain a global picture of the assembly of isolates involved in Syrian populations which is essential for the development of scald-resistant barley cultivars. To identify a number of pathogenic groups, 49 isolates collected over ten years from major barley growing areas in Syria were evaluated on five differential barley genotypes. Genotypes presented a continuous range of response from highly susceptible to moderately resistant, but none were immune to the disease. A cluster analysis placed isolates in six distinct differential pathogenic groups. Mean disease rating of 39.24% was the separation point between avirulent and virulent reactions. Isolate Rs46 exhibited distinct differential virulence patterns associated with high frequency across all genotypes. Hence, the data presented here provides crucial information for future selection of isolates to develop durable barley scald resistance.

• International Journal of Industrial Entomology and Biomaterials
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• 제4권2호
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• pp.143-147
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• 2002

Studies on the interrelationship between biological yield and harvest index, and their association with shoot rearing were carried out in 9 promising mulberry genotypes, which indicated significant variations among genotypes. Biological yield had close association with leaf yield components indicating that they are inter-related for higher productivity in mulberry, Biological yield revealed highly significant positive correlation with important leaf yield components. However height of the longest branch showed negative correlation with biological yield. Genotypes with higher biological yield associated with low ratio of stem weight to leaf weight and high Harvest index on dry weight basis are to be selected for shoot rearing. Biological yield recorded on fresh weight basis had less impact on the present study in comparison to dry weight basis.

• Mycobiology
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• 제43권3호
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• pp.360-365
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• 2015

Multilocus sequence typing analysis was applied to determine the genotypes of 147 (137 clinical and 10 environmental) Cryptococcus neoformans and three clinical Cryptococcus gattii isolates from 1993 to 2014 in Korea. Among the 137 clinical isolates of C. neoformans, the most prevalent genotype was ST5 (n = 131), followed by ST31 (n = 5) and ST127 (n = 1). Three C. gattii strains were identified as ST57, ST7, and ST113. All environmental isolates were identified as C. neoformans with two genotypes, ST5 (n = 7) and ST31 (n = 3). Our results show that C. neoformans isolates in Korea are genetically homogeneous, and represent a close genetic relationship between clinical and environmental isolates.

• 농업과학연구
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• 제2권2호
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• pp.341-356
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• 1975

본 연구는 육성후대의 3개 동기생육형 합성품종과 서부 oregon의 저온다습한 기후 하에 선발된 7개인자형의 다계교배 파생계통들의 능력을 검정하기 위하여 대비품종으로 다수성품종 Fawn을 공시하여 대전의 충남대학교 공과대학 실험포장에서 수행하였다. 특히 광합성과 관련이 깊은 식물체 및 잎의 주요형질과 아울러 재식후 첫여름의 조사로 생산량을 조사 분석하였던바 주요한 결론을 요약하면 다음과 같다. 1) 파생계통 및 합성품종군과 대비품종 상호간에는 생엽중의 유전적인 차이를 나타내었던바 다계교배 파생계통군의 평균 생엽중이 가장 무거웠고 다음이 합성품종군 이었으며 대비품종 Fawn이 가장 가벼웠다. 한편 다계교배 파생계통군 대에서는 인자형들간에 건엽중의 유전적 차이를 나타내고 있었다. 2) 엽면적 역시 파생계통 군합성품종군 및 대비품종간에 유전적 차이를 보였는데 동기생육형 합성품종군의 평균 엽면적이 대비품종 Fawn에 비해 현저히 넓었으며 다계교배 파생계통군이 가장 넓은 평균 엽면적을 보았다. 3) 합성품종군 파생계통군 및 대비품종간에 특정엽중(단위엽면적당엽중)의 차이는 인정되지 않았는데 앞으로 이특저엽중의 중간변이에 관한 연구가 요망된다. 4) 엽폭은 파생계통군, 합성품종군 및 대비품종간에 현저한 유전적인 차이가 인정되었던바 다계교배 파생계통군의 평균엽폭이 가장 넓었고 다음에 동기새육형 합성품종군 이었으며 대비품종 Fawn이 가장 좁았다. 5) 제1회 예취전 초장은 대비품종 Fawn이 동계생육형 합성품종이나 파생계통에 대해 현저히 길었으며 한편7개인자형의 다계교배 파생계통간에서는 초장의 편차가 크게 나타났으나 초장의 재생력은 품종 파생계통간 혹은 내에서 유의차가 인정되지 않았다. 6) 일차 예취전의 주폭(株幅) 즉 포장피복능력은 동기생육형 합성품종에서 컷고 한편 1차예취후의 주폭은 다계교배파생계통들간에 상당한 차이를 나타내었던바 유전적인 차이가 충분히 인정되었다. 8) 제1차예취시의 청예수량은 합성품종의 후기세대에서 상당한 개선을 보았으며 다계교배 파생계통의 7개 인형들간에는 상당한 유전적인 차이를 보였다. 다계교배 파생계통군의 평균수량은 대비 품종이나 동기생육형 합성품종의 수량보다 현저히 높았던바 이로서 보다 수량성이 높은 품종의 개량이 앞으로 가능할 것이라고 추측된다. 9) 여름동안의 청예수량 및 초장 재생력으로 보면 동기생육형 품종군 및 파생계통들간의 재생력에는 대체로 차이가 없었다. 10) 전체적으로 볼때 특정엽중 및 제1회 예취전초장을 제외한 전형질에서 모두 유의성은 인정되는 것은 아니라 하더라도 다계교배 파생계통군이 가장 우수하였고 다음이 합성품종군이었으며 대비품종 Fawn이 가장 떨어졌다. 그리고 다계교배 파생계통의 7개 인자형 간에는 유전적인 차이가 인정되었다. 11) 통계적인 유의성이 모두 인정되는것은 아니나 모두 형질에서 품종 1002가 1001 및 1000두품종보다 우수 하였다. 12) 여러형질간의 상관연구의 결과는 잘일치되고 있는바 보다나은 품종의 개량을 위한 바람직한 인자형의 선발에 기여 할수 있을 것이다.

• 생명과학회지
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• 제19권2호
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• pp.234-240
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• 2009

부산지역의 유흥업소 종사여성을 대상으로 HPV DNA chip 시험을 통하여 HPV 유병율 및 유전자형 분포를 조사하였다. 총 660건의 자궁경부도찰 검체로부터 258건(양성율 39.1%)이 검출되었으며, 20대에서 가장 높은 유병율을 나타내었다. 양성자의 유전자형 분포는 고위험군 유전자형의 경우 HPV-16 (15.9%), -53 (10.2%), -58 (7.7%), -18 (5.2%)순이었고, 저위험군 유전자형의 경우 HPV-70 (10.4%), -6 (4.1%), -11 Journal of Life Science 2009, Vol. 19. No. 2 239 (2.0%)순이었다. 특이하게 고위험군 감염여성의 분포비(62.0%)가 저위험군(14.7%) 및 고/저위험군 혼합감염(12.0%)보다 4배 가까이 높았다. 전체 양성자중 단일유형 감염자는 175건(67.8%)이고 혼합유형 감염자는 83건(32.2%)이었다. 본 연구 결과 밝혀진 부산지역 유흥업소 종사여성에서 많이 발견되는 HPV 유전자형 분포의 다양성은 국내 도입된 자궁경부암 예방백신의 효과 예측 및 국내 특성에 맞는 다가백신 개발의 기초 자료가 될 수 있을 것으로 사료된다.

• Maxillofacial Plastic and Reconstructive Surgery
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• 제22권4호
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• pp.373-382
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• 2000

Individual genetic susceptibilities to cancers may result from several factors including differences in xenobiotics metabolism to chemical carcinogens, DNA repair, altered oncogenes and suppressor genes, and environmental carcinogen exposures. Among them, genetic polymorphisms of metabolizing enzymes to chemical carcinogens have been recognized as a major important host factors in human cancers. They have two main types of enzymes: the phase I cytochrome P-450 mediating enzymes (CYPs) and phase II conjugating enzymes. The purpose of this study is to determine the frequencies of genotypes of phase I (CYP1A1 and CYP2E1) and phase II (NAT2) metabolizing enzymes in healthy control and head and neck cancer patients of Korean and to identify the relative high risk genotypes of these metabolizing enzymes to head and neck cancer in Korean. The author has analyzed 132 head and neck cancer patients and 113 healthy controls using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). The results were as following; 1. The frequencies of genotypes of CYP1A1, CYP2E1 and NAT2 in healthy control were as following; CYP1A1 exon 7 polymorphism; Ile/Ile: Ile/Val: Val/Val = 59.3%: 36.3%: 4.4% CYP2E1 Pst I polymorphism, C1/C1: C1/C2: C2/C2 = 61.1%: 32.1%: 6.2% NAT2 polymorphism; F/F: F/S: S/S = 43.4%: 48.7%: 8.0% 2. In analysis of phase I enzyme, Val/Val genotype in CYP1A1 exon 7 polymorphism and C2/C2 genotype in CYP2E1 Pst I polymorphism were associated with relative high risks to head and neck cancers (Odds' ratio: 2.09 and 1.37, respectively). 3. Among the genotypes of NAT2 enzyme polymorphism, S/S genotype of NAT2 enzyme had 1.03 times of relative risk to head and neck cancers. 4. In combined genotyping of CYP1A1, CYP2E1, and NAT2 enzymes polymorphisms, the patients with Val/Val and C1/C1, C2/C2 and fast acetylator, and Val/Val and fast acetylator had higher relative risks than the patients with each baseline of combined genotypes (Odds' ratio: 2.82, 1.98 and 2.1, respectively). These results suggest the combined genotypes of Val/Val and C1/C1, C2/C2 and fast acetylator, and Val/Val and fast acetylator were more susceptible to head and neck cancers in Korean. And genotyping of metabolizing enzymes could be useful for predicting individual susceptibility to head and neck cancer.