• Journal of the Society of Naval Architects of Korea
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• v.59 no.1
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• pp.39-45
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• 2022

Normal strategy of structure optimization procedure has been minimum cost or weight design. Minimum weight design satisfying an allowable stress has been used for the ship and offshore structure, but minimum cost design could be used for the case of high human cost. Natural frequency analysis and forced vibration one have been used for the strength estimation of marine structures. For the case of high precision experiment facilities in marine field, the structure has normally enough margin in allowable stress aspect and sometimes needs high natural frequency of structure to obtain very high precise experiment results. It is not easy to obtain a structure design with high natural frequency, since the natural frequency depend on the stiffness to mass ratio of the structure and increase of structural stiffness ordinary accompanies the increase of mass. It is further difficult at the grillage structure design using the profiles, because the properties of profiles are not continuous but discrete, and resource of profiles are limited at the design of grillage structure. In this paper, the grillage structure design system under the constraint of high natural frequency is introduced. The design system adopted genetic algorithm to realize optimization procedure and can be used at the design of the experimental facilities of marine field such as a towing carriage, PMM, test frame, measuring frame and rotating arm.

• Transactions of the Korean Society of Mechanical Engineers A
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• v.28 no.10
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• pp.1558-1565
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• 2004

It is important to determine supporting locations for structural stability when a structure is loaded with non-uniform load or supporting locations as well as the number of the supporting structures are restricted by the problem of space. Moreover, the supporting location optimization of complex structure in real world is frequently faced with discontinuous design space. Therefore, the traditional optimization methods based on derivative are not suitable Whereas, Genetic Algorithm (CA) based on stochastic search technique is a very robust and general method. The KSTAR in-vessel control coil installed in vacuum vessel is loaded with non- uniform electro-magnetic load and supporting locations are restricted by the problem of space. This paper shows the supporting location optimization for structural stability of the in-vessel control coil. Optimization has been performed by means of a developed program. It consists of a Finite Element Analysis interfaced with a Genetic Algorithm. In addition, this paper presents an algorithm to find an optimum solution in discontinuous space using continuous design variables.

• Journal of Microbiology and Biotechnology
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• v.15 no.5
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• pp.1120-1124
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• 2005

Pseudomonas putida KCTC 1639 was newly identified as a potential producer of biodegradable medium chain length polyhydroxyalkanoates. It exhibited a carbon assimilation pattern quite different from other known P. putida strains, but a more similar pattern with P. oleovorans, which assimilates the carbon sources mainly through ${\beta}$-oxidation rather than the fatty acid biosynthesis pathway. The PHA synthesis gene cluster from P. putida KCTC1639 was composed of two gene loci; the PHA synthase gene locus and granule-associated gene locus, which were cloned and deposited in the GenBank under accession numbers AY286491 and AY750858 as a new nucleotide sequence, respectively. The molecular structure and amino acid homology of the new gene cluster were compared with those from Pseudomonas species, including other P. putida strains and P. oleovorans, and a higher than $90\%$ homology was observed.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.41 no.6
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• pp.466-470
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• 2008

Microsatellite DNA markers were used to investigate the genetic diversity and population structure of Pacific abalone Haliotis discus hannai collected from six locations (Uljin, Ulsan, Daechon, Taean, Wando, and Yosu) where hatchery-produced abalone have been released intensively. There was no distinguishable difference in the observed and expected heterozygosities between the six populations and a cultured population. However, there was a difference in the number of alleles per locus: 12.8 for the cultured population and 13.8 to 15.8 for the six populations. The proportion of stocked abalone ranged from 41.1 to 92.7% for wild-caught populations with a decreasing tendency of alleles per locus for an increasing proportion of stocked abalone. A departure from Hardy-Weinberg equilibrium (HWE) assessed using the Markov chain procedure (P<0.05) was observed in the six populations and cultured population at loci Hdh145 and Hdh5l2. The pairwise Fst test (P<0.05) showed a significant difference between the Uljin and Ulsan populations and four remaining populations (Wando, Daechon, Yosu, and the cultured population), among which the Wando population differed less than the other three populations (Daechon, Yosu, and the cultured population).

• Parasites, Hosts and Diseases
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• v.55 no.5
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• pp.465-472
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• 2017

Recent trends of malaria in Thailand illustrate an increasing proportion of Plasmodium vivax, indicating the importance of P. vivax as a major causative agent of malaria. P. vivax malaria is usually considered a benign disease so the knowledge of this parasite has been limited, especially the genetic diversity and genetic structure of isolates from different endemic areas. The aim of this study was to examine the population genetics and structure of P. vivax isolates from 4 provinces with different malaria endemic settings in Thailand using 6 microsatellite markers. Total 234 blood samples from P. vivax mono-infected patients were collected. Strong genetic diversity was observed across all study sites; the expected heterozygosity values ranged from 0.5871 to 0.9033. Genetic variability in this study divided P. vivax population into 3 clusters; first was P. vivax isolates from Mae Hong Son and Kanchanaburi Provinces located on the western part of Thailand; second, Yala isolates from the south; and third, Chanthaburi isolates from the east. P. vivax isolates from patients having parasite clearance time (PCT) longer than 24 hr after the first dose of chloroquine treatment had higher diversity when compared with those having PCT within 24 hr. This study revealed a clear evidence of different population structure of P. vivax from different malaria endemic areas of Thailand. The findings provide beneficial information to malaria control programme as it is a useful tool to track the source of infections and current malaria control efforts.

• Journal of the Korean Ceramic Society
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• v.48 no.6
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• pp.493-498
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• 2011

Optimal atomic configurations in a nanoparticle were predicted by genetic algorithm. A truncated octahedron with a fixed composition of 1 : 1 was investigated as a model system. A Python code for genetic algorithm linked with a molecular dynamics method was developed. Various operators were implemented to accelerate the optimization of atomic configuration for a given composition and a given morphology of a nanoparticle. The combination of random mix as a crossover operator and total_inversion as a mutation operator showed the most stable structure within the shortest calculation time. Pt-Ag core-shell structure was predicted as the most stable structure for a nanoparticle of approximately 4 nm in diameter. The calculation results in this study led to successful prediction of the atomic configuration of nanoparticle, the size of which is comparable to that of practical nanoparticls for the application to the nanocatalyst.

• Proceedings of the KIEE Conference
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• 2007.04a
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• pp.201-203
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• 2007

The paper concerns the successive optimization for structure and parameters of fuzzy inference systems that is based on parallel Genetic Algorithms (PGA) and information data granulation (IG). PGA is multi, population based genetic algorithms, and it is used tu optimize structure and parameters of fuzzy model simultaneously, The granulation is realized with the aid of the C-means clustering. The concept of information granulation was applied to the fuzzy model in order to enhance the abilities of structural optimization. By doing that, we divide the input space to form the premise part of the fuzzy rules and the consequence part of each fuzzy rule is newly' organized based on center points of data group extracted by the C-Means clustering, It concerns the fuzzy model related parameters such as the number of input variables to be used in fuzzy model. a collection of specific subset of input variables, the number of membership functions according to used variables, and the polynomial type of the consequence part of fuzzy rules, The simultaneous optimization mechanism is explored. It can find optimal values related to structure and parameter of fuzzy model via PGA, the C-means clustering and standard least square method at once. A comparative analysis demonstrates that the Dnmosed algorithm is superior to the conventional methods.

• Animal cells and systems
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• v.14 no.3
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• pp.197-206
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• 2010

The population structure of brown sole was examined in a total of 308 samples collected from three geographical groups: one locality (Gangneung) on the east side of the Korean Peninsula, two localities (Erimo and Tomakomai) on the southeastern side and four localities (Onishika, Teshio, Tomamae and Yoichi) on the northwestern side of Hokkaido Island, Japan, by using sequences of 484 bp from the 5' end of the control region of mtDNA. We detected 225 haplotypes, but 183 of them were unique to an individual. A total of 116 nucleotide sites were variable. Haplotype diversity (h) was very high, ranging from 0.989 to 1.000, and nucleotide diversity (${\pi}$) was detected between 0.015 and 0.022. Genetic distances (${\Phi}_{ST}$) within populations, among populations and among geographical groups were low (0.0002 to 0.0014). No significant difference was detected by the AMOVA test (P < 0.05). Pairwise $F_{ST}$ values between sampling localities were also low and not significant. Genetic differentiation was not detected among sampling localities.

• ALGAE
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• v.36 no.1
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• pp.13-24
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• 2021

The present-day genetic structure of macroalgal species reflects both geographical history and oceanic circulation patterns as well as anthropogenic introduction across native ranges. To precisely understand the genetic diversity and how the factors shape the current population structure of Gloiopeltis furcata sensu lato, we determined the mitochondrial 5' end of cytochrome c oxidase subunit I (COI-5P) sequences for 677 individuals sampled from 67 sites spanning almost the entire distribution range in Korea and Japan. Results from the phylogenetic analysis and haplotype distribution revealed eleven distinct lineages within G. furcata s.l. along the Korea-Japan coastal areas and displayed divergent phylogeographic patterns among lineages. Despite the closely related lineages distributed in same habitats as high rocky intertidal zone, they display different phylogeographic patterns among lineages. The populations from the south of Korea-Japan harbored the highest genetic diversity and unique endemism in comparison with other populations in the distribution range. This could be the evidence of southern refugia for G. furcata s.l. in the Northwest (NW) Pacific and the recent migration from native to introduced region. The reason is that an exceptional distribution pattern was found high genetic diversity in Hakodate of Japan where is the northern location in the NW Pacific. Our results imply the contemporary influence on the distribution due to current circulation pattern and anthropogenic effects. These phylogeographic findings provide the important insight into cryptic species diversity and the detailed distribution pattern of Gloiopeltis in the NW Pacific.

• Animal Systematics, Evolution and Diversity
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• v.39 no.4
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• pp.264-271
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• 2023

The edible jellyfish Rhopilema esculentum occurs in waters throughout northeastern Asia, including in Korea, China, and Japan. In Korean waters, R. esculentum has appeared in two regions (Gangwha and Muan). Based on the appearance of young medusae and coastal distribution records, these two regions may be key R. esculentum breeding sites. In the present study, we investigate and compare the genetic structure of R. esculentum in the two regions using mitochondrial sequences (16S ribosomal RNA and cytochrome c oxidase subunit I). The genetic diversity of the R. esculentum population at Ganghwa exceeded that of the population at Muan. Despite considerable geographic separation (400 km) between the two regions(Gangwha and Muan), our haplotype network suggests that the Gangwha and Muan populations of R. esculentum are related. The simple and monotonous genetic structure of the Muan population shows that R. esculentum emergence is relatively recent. In contrast, the Gangwha population shows evolution. Moreover, jellyfish of the Gangwha population are genetically diverse and remain constant despite environmental fluctuations in the Han River. The Gangwha area is considered to be the old origin of R. esculentum in Korea.