• Title/Summary/Keyword: genetic drift

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Evolution of avian infectious bronchitis virus: Genetic drift and recombination

  • Lee, Chang-Won
    • Korean Journal of Veterinary Service
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    • v.25 no.1
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    • pp.97-103
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    • 2002
  • Infectious bronchitis(IB) is a viral disease in which continued evolution of the virus is of paramount importance for annual endemics and epidemics in chickens. Since the isolation of IB viruses(IBVs) in the 1930s, over 50 serotypes or variants have been reported worldwide. Continuing evolution is most prominent in the suface glycoproteins of IBV but also occurs in other parts of the genome. This genetic variability results from accumulation of molecular changes that can occur by a number of different mechanisms including genetic drift (point mutations) and genetic shift(RNA recombination). GA98 is a new serotype of IBV identified recently in the United States. In this paper, the evolutionary trend of IBV will be discussed using GA98 serotype as a model.

Genetic Structure of Pinus rigida Mill. in an Expanding Population Originating from a Few Founder Trees (수본(數本)의 양친수(兩親樹)에 의해 전파증식(傳播増殖)중에 있는 리기다소나무 집단(集團)의 유전적(遺傳的) 구조(構造))

  • Chung, Min Sup
    • Journal of Korean Society of Forest Science
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    • v.72 no.1
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    • pp.16-26
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    • 1986
  • Allozyme study on a small pitch pine stand originating and expanded rather rapidly from a few founder trees indicated that the colonization of the pitch pine population was made progressively from the place where the founder trees located to another by moving in cohorts of seeds from a limited number of family or genetically closely related family groups in line with the succeeding generations. This pattern of migration and colonization resulted marked differences in allelic and genotypic frequencies at many of the allozyme loci between the initially colonized subpopulation on the south-facing slope and the lately colonized subpopulation on north-facing slope of a hill. It appeared that gene fixation due to inbreeding and genetic drift occurred at some loci in the pitch pine population or subpopulations. However, even in t 1e inbreeding small pitch pine population or subpopulations, a comparatively large amount of genetic diversity or heterozygosity was maintained due to the high levels of gene recombination at many of the gene loci and natural selections favoring for heterozygotes.

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Effects of infill walls on RC buildings under time history loading using genetic programming and neuro-fuzzy

  • Kose, M. Metin;Kayadelen, Cafer
    • Structural Engineering and Mechanics
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    • v.47 no.3
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    • pp.401-419
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    • 2013
  • In this study, the efficiency of adaptive neuro-fuzzy inference system (ANFIS) and genetic expression programming (GEP) in predicting the effects of infill walls on base reactions and roof drift of reinforced concrete frames were investigated. Current standards generally consider weight and fundamental period of structures in predicting base reactions and roof drift of structures by neglecting numbers of floors, bays, shear walls and infilled bays. Number of stories, number of bays in x and y directions, ratio of shear wall areas to the floor area, ratio of bays with infilled walls to total number bays and existence of open story were selected as parameters in GEP and ANFIS modeling. GEP and ANFIS have been widely used as alternative approaches to model complex systems. The effects of these parameters on base reactions and roof drift of RC frames were studied using 3D finite element method on 216 building models. Results obtained from 3D FEM models were used to in training and testing ANFIS and GEP models. In ANFIS and GEP models, number of floors, number of bays, ratio of shear walls and ratio of infilled bays were selected as input parameters, and base reactions and roof drifts were selected as output parameters. Results showed that the ANFIS and GEP models are capable of accurately predicting the base reactions and roof drifts of RC frames used in the training and testing phase of the study. The GEP model results better prediction compared to ANFIS model.

A constrained minimization-based scheme against susceptibility of drift angle identification to parameters estimation error from measurements of one floor

  • Kangqian Xu;Akira Mita;Dawei Li;Songtao Xue;Xianzhi Li
    • Smart Structures and Systems
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    • v.33 no.2
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    • pp.119-131
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    • 2024
  • Drift angle is a significant index for diagnosing post-event structures. A common way to estimate this drift response is by using modal parameters identified under natural excitations. Although the modal parameters of shear structures cannot be identified accurately in the real environment, the identification error has little impact on the estimation when measurements from several floors are used. However, the estimation accuracy falls dramatically when there is only one accelerometer. This paper describes the susceptibility of single sensor identification to modelling error and simulations that preliminarily verified this characteristic. To make a robust evaluation from measurements of one floor of shear structures based on imprecisely identified parameters, a novel scheme is devised to approximately correct the mode shapes with respect to fictitious frequencies generated with a genetic algorithm; in particular, the scheme uses constrained minimization to take both the mathematical aspect and the realistic aspect of the mode shapes into account. The algorithm was validated by using a full-scale shear building. The differences between single-sensor and multiple-sensor estimations were analyzed. It was found that, as the number of accelerometers decreases, the error rises due to insufficient data and becomes very high when there is only one sensor. Moreover, when measurements for only one floor are available, the proposed method yields more precise and appropriate mode shapes, leading to a better estimation on the drift angle of the lower floors compared with a method designed for multiple sensors. As well, it is shown that the reduction in space complexity is offset by increasing the computation complexity.

A Study on the Application of Genetic Algorithms and Fuzzy System to GAS Identification System (가스 식별 시스템 설계를 위한 유전알고리즘과 퍼지시스템 적용에 관한 연구)

  • Bang, Young-Keun;Haibo, Zhao;Lee, Chul-Heui
    • Journal of Industrial Technology
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    • v.31 no.B
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    • pp.45-50
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    • 2011
  • Recently, machine olfactory systems that have been proposed as an artificial substitute of the human olfactory system are being studied by many researchers because they can scent dangerous gases and identify the type of gases in contamination areas instead of the human. In this paper, we present an effective design method for the gas identification system. The design method adopted the sequential combination between genetic algorithms and TSK fuzzy logic system. First, the proposed method allowed the designed gas identification system effectively performing the pattern analysis because it was able to avoid the curse of dimensionality caused by use of a large number of sensors. Secondly, the method led the gas identification system to good performance because it was able to deal with drift characteristics of the sensor data by using description ability of the fuzzy system for nonlinear data. In simulation, we demonstrated the effectiveness of the designed gas identification system by using the simulation results of five types of gases.

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Genetic Variation of Two Isolated Relict Populations of Vaccinium uliginosum L. in Korea (들쭉나무 격리잔존 2개 집단의 유전변이)

  • Han, Sang-Don;Hong, Yong-Pyo;Kwon, Hae-Yun;Yang, Byeung-Hoon;Kim, Chan-Soo
    • Journal of Korean Society of Forest Science
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    • v.94 no.4 s.161
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    • pp.209-213
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    • 2005
  • In order to provide the molecular genetic information necessary for conservation of bog whortleberry (Vaccinium uliginosum L), one of the rare species in Korea, I-SSR analysis was performed on two populations on Mt. Halla and Mt. Seorak. A total of 68 I-SSR products were observed, and higher level of genetic diversity was observed in Mt. Halla population (S.I.=0.539) than in the Mt. Seorak population (S.I,=0.401). Level of genetic diversity in this species was relatively higher than those in other rare species analysed with I-SSR marker. From the results of AMOVA, exceptionally large proportion of genetic diversity (33.5%) was resulted from genetic difference between two populations, and only 66.5% of the genetic variation was allocated in common among individuals within each population, compared with the results in other long-lived woody species. This remarkably high degree of genetic heterogeneity existed between Mt. Halla and Mt. Seorak populations might suggest that they might be originated from the independent progenitors before the post glacier ages, respectively, and/or that they undergone random genetic drift respectively due to geographical isolation resulted from dramatic changes in environmental conditions after the post glacier ages.

THE APPLICATION OF STOCHASTIC DIFFERENTIAL EQUATIONS TO POPULATION GENETIC MODEL

  • Choi, Won;Choi, Dug-Hwan
    • Bulletin of the Korean Mathematical Society
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    • v.40 no.4
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    • pp.677-683
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    • 2003
  • In multi-allelic model $X\;=\;(x_1,\;x_2,\;\cdots\;,\;x_d),\;M_f(t)\;=\;f(p(t))\;-\;{\int_0}^t\;Lf(p(t))ds$ is a P-martingale for diffusion operator L under the certain conditions. In this note, we examine the stochastic differential equation for model X and find the properties using stochastic differential equation.

Inbreeding and Genetic Diversity in Three Imported Swine Breeds in China Using Pedigree Data

  • Tang, G.Q.;Xue, J.;Lian, M.J.;Yang, R.F.;Liu, T.F.;Zeng, Z.Y.;Jiang, A.A.;Jiang, Y.Z.;Zhu, L.;Bai, L.;Wang, Z.;Li, X.W.
    • Asian-Australasian Journal of Animal Sciences
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    • v.26 no.6
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    • pp.755-765
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    • 2013
  • The accumulation of inbreeding and the loss of genetic diversity is a potential problem in the modern swine breeds in China. Therefore, the purpose of this study was to analyze the pedigrees of Chinese Duroc (CD), Landrace (CL) and Yorkshire (CY) swine to estimate the past and current rates of inbreeding, and to identify the main causes of genetic diversity loss. Pedigree files from CD, CL and CY containing, 4529, 16,776 and 22,600 records, respectively, were analyzed. Pedigree completeness indexes of the three breeds, accounting for one generation back, were 83.72, 93.93 and 93.59%, respectively. The estimated average annual inbreeding rates for CD, CL and CY in recent three years were 0.21, 0.19 and 0.13%, respectively. The estimated average percentage of genetic diversity loss within each breed in recent three years was about 8.92, 2.19, and 3.36%, respectively. The average relative proportion of genetic diversity loss due to unequal contributions of founders in CD, CL and CY was 69.09, 57.95 and 60.57%, and due to random genetic drift was 30.91, 42.05 and 39.43%, respectively. The estimated current effective population size for CD, CL and CY was 76, 117 and 202, respectively. Therefore, CD has been found to have lost considerable genetic diversity, demanding priority for optimizing the selection and mating to control future coancestry and inbreeding. Unequal contribution of founders was a major cause of genetic diversity loss in Chinese swine breeds and random genetic drift also showed substantial impact on the loss of diversity.

Genetic algorithm based optimum design of non-linear steel frames with semi-rigid connections

  • Hayalioglu, M.S.;Degertekin, S.O.
    • Steel and Composite Structures
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    • v.4 no.6
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    • pp.453-469
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    • 2004
  • In this article, a genetic algorithm based optimum design method is presented for non-linear steel frames with semi-rigid connections. The design algorithm obtains the minimum weight frame by selecting suitable sections from a standard set of steel sections such as European wide flange beams (i.e., HE sections). A genetic algorithm is employed as optimization method which utilizes reproduction, crossover and mutation operators. Displacement and stress constraints of Turkish Building Code for Steel Structures (TS 648, 1980) are imposed on the frame. The algorithm requires a large number of non-linear analyses of frames. The analyses cover both the non-linear behaviour of beam-to-column connection and $P-{\Delta}$ effects of beam-column members. The Frye and Morris polynomial model is used for modelling of semi-rigid connections. Two design examples with various type of connections are presented to demonstrate the application of the algorithm. The semi-rigid connection modelling results in more economical solutions than rigid connection modelling, but it increases frame drift.

Control of Smart Base-isolated Benchmark Building using Fuzzy Supervisory Control (퍼지관리제어기법을 이용한 스마트 면진 벤치마크 건물의 제어)

  • Kim, Hyun-Su;Roschke P. N.
    • Journal of the Earthquake Engineering Society of Korea
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    • v.9 no.4 s.44
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    • pp.55-66
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    • 2005
  • The effectiveness of fuzzy supervisory control technique for the control of seismic responses of smart base isolation system is investigated in this study. To this end, first generation base isolated building benchmark problem is employed for the numerical simulation. The benchmark structure under consideration is an eight-story base isolated building having irregular plan and is equipped with low-damping elastometric bearings and magnetorheological (MR) dampers for seismic protection. Lower level fuzzy logic controllers (FLC) for far-fault or near-fault earthquakes are developed in order to effectively control base isolated building using multi-objective genetic algorithm. Four objectives, i.e. reduction of peak structural acceleration, peak base drift, RMS structural acceleration and RMS base drift, are used in multi-objective optimization process. When earthquakes are applied to benchmark building, each of low level FLCs provides different command voltage and supervisory fuzzy controller combines two command voltages io one based on fuzzy inference system in real time. Results from the numerical simulations demonstrate that base drift as well as superstructure responses can be effectively reduced using the proposed supervisory fuzzy control technique.