• Asian Pacific Journal of Cancer Prevention
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• 제15권4호
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• pp.1817-1822
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• 2014

Objective: The aim of this study was to screen for possible biomarkers of metastatic osteosarcoma (OS) using a DNA microarray. Methods: We downloaded the gene expression profile GSE49003 from Gene Expression Omnibus database, which included 6 gene chips from metastatic and 6 from non-metastatic OS patients. The R package was used to screen and identify differentially expressed genes (DEGs) between metastatic and non-metastatic OS patients. Then we compared the expression of DEGs in the two groups and sub-grouped into up-regulated and down-regulated, followed by functional enrichment analysis using the DAVID system. Subsequently, we constructed an miRNA-DEG regulatory network with the help of WebGestalt software. Results: A total of 323 DEGs, including 134 up-regulated and 189 down-regulated, were screened out. The up-regulated DEGs were enriched in 14 subcategories and most significantly in cytoskeleton organization, while the down-regulated DEGs were prevalent in 13 subcategories, especially wound healing. In addition, we identified two important miRNAs (miR-202 and miR-9) pivotal for OS metastasis, and their relevant genes, CALD1 and STX1A. Conclusions: MiR-202 and miR-9 are potential key factors affecting the metastasis of OS and CALD1 and STX1A may be possible targets beneficial for the treatment of metastatic OS. However, further experimental studies are needed to confirm our results.

• 한국정보통신학회논문지
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• 제16권12호
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• pp.2747-2754
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• 2012

본 논문에서 PC 컨텐츠의 활용을 극대화시키는 부가기능을 갖는 다중 LCD(Liquid Crystal Display) 시스템을 개발하였다. 이는 host LCD와 slave LCD로 구성되어 있다. Host LCD는 NTSC(National Television System Committee), PAL(Phase Alternation Line), SECAM(S$\acute{e}$quentiel couleur avec m$\acute{e}$moire) 신호를 받아 영상 및 음성을 데코딩하여 출력한다. 이 데코딩된 신호들을 LVDS(Low Voltage Differential Signaling) 신호로 변환하여 slave LCD단으로 전송을 하는 기능을 갖는다. 그리고 CF 메모리, USB 메모리등을 장착하여 멀티미디어 데이터를 출력하도록 한다. Slave LCD는 host LCD와 달리 튜너부분이 없고 메모리 장착이 되지 않아 자체 TV 신호 수신 및 영상 신호 재생을 하지 못한다. 다만, LVDS 영상 신호를 받아 LCD 팬널에 출력하는 기능만 갖도록 한다. 본 논문에서 개발한 다중 LCD 시스템은 제품이 단순하여 상대적으로 고장률이 낮고, 가격이 저렴하고 제어부분의 간소화로 디스플레이의 전력이 낮으며, host LCD의 채널, 볼륨 및 영상 출력에 대하여 전체 slave LCD를 제어할 수 있는 제품으로서의 가격 및 기능 경쟁력을 갖추고 있다.

• 한국전문물리치료학회지
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• 제22권3호
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• pp.61-70
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• 2015

To develop an effective and efficient measurement system for tracking changes of functional status across two measures, it is essential to integrate information and communicate scores across two measures. The lack of communication between two measures leads to score incompatibility. A potential solution would be the development of a crosswalk table between those measures. Prior to creating a crosswalk table, selecting common items between two measures is critical. By using the Oswestry low back pain disability questionnaire (Oswestry) and a short form measuring disability resulting from low back pain, item level statistics as well as differential item functioning (DIF) using the Rasch measurement were investigated. Eighty-two participants with known group validity were recruited. Based on the application of the Rasch measurement model, item difficulties across the two measures were logically and hierarchically ordered. Ceiling effects for both measures were detected, which were not be able to be effectively measured with the two measures. The DIF analysis across the two measures confirmed that five paired items were found to have DIF and five common items were selected for common items. Although five paired items function differently across the Oswestry and the short form, all items of both measures were well targeted study participants. The common items selected by the Rasch measurement model may be effective when creating a crosswalk table between the Oswestry and the short form.

• 대한기계학회:학술대회논문집
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• 대한기계학회 2002년도 학술대회지
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• pp.321-324
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• 2002

Hydraulic valve control the pressure and the How of fluid by the hydraulic oil transfered from pump but the ER fluid consists of solid particles of micrometer in size and insulating oil so in the general hydraulic valve. We invented ER-Valve using ER fluid as working fluid. The ER fluid, working fluid of ER-Valve is a functional fluid to represent the feature of fluid according to strength of electric field. In this research we made our own 4 types of plate type ER-Valve which has same surface but different width and length and then we conducted performance test. We measured flow rate and pressure drop of fluid which is flowing in the ER-Valve according to the electric field strength to conduct this test. We modeling ER-Valve relating to ER-Valve system and yield shear stress according to the strength of electric field. We used the pressure drop according to the strength of electric field by differential pressure gauge in the our own made ER-Valve. This test reviewed experimental the special changes of ER-Fluid in the steady flow condition.

• 한국정밀공학회:학술대회논문집
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• 한국정밀공학회 2006년도 춘계학술대회 논문집
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• pp.111-112
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• 2006

A new MR cylinder with built-in valves using Magneto - Rheological fluid (MR valve) is proposed for fluid power control systems. The MR fluid is a newly developed functional fluid whose obvious viscosity is controlled by the applied magnetic field intensity. This MR cylinder, which is composed of cylinder with small clearance and piston with electromagnet, has the characteristics of simple, compact and reliable structure. This paper presents a method to control the pressure of MR cylinder by using Generalized Predictive Control (GPC) algorithm. The differential pressure is controlled by applying magnetic field intensity to MR fluid. The use of GPC controller is to generate a control sequence by minimizing a cost function in such a way that the future system output is driven close to reference over finite prediction horizons. Experimental results from real time control using GPC method compared with conventional PID control method are also shown in this paper.

• 한국생물정보학회:학술대회논문집
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• 한국생물정보시스템생물학회 2006년도 Principles and Practice of Microarray for Biomedical Researchers
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• pp.98-107
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• 2006

Chromosomal copy number changes (aneuploidies) are common in human populations. The extra chromosome can affect gene expression by whole-genome level. By gene expression microarray analysis, we want to find aberrant gene expression due to aneuploidies in Klinefelter (+X) and Down syndrome (+21). We have analyzed the inactivation status of X-linked genes in Klinefelter Syndrome (KS) by using X-linked cDNA microarray and cSNP analysis. We analyzed the expression of 190 X-linked genes by cDNA microarray from the lymphocytes of five KS patients and five females (XX) with normal males (XY) controls. cDNA microarray experiments and cSNP analysis showed the differentially expressed genes were similar between KS and XX cases. To analyze the differential gene expressions in Down Syndrome (DS), Amniotic Fluid (AF)cells were collected from 12 pregnancies at $16{\sim}18$ weeks of gestation in DS (n=6) and normal (n=6) subjects. We also analysis AF cells for a DNA microarray system and compared the chip data with two dimensional protein gel analysis of amniotic fluid. Our data may provide the basis for a more systematic identification of biological markers of fetal DS, thus leading to an improved understanding of pathogenesis for fetal DS.

• 한국자원식물학회:학술대회논문집
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• 한국자원식물학회 2018년도 춘계학술발표회
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• pp.5-5
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• 2018

Ginseng (Panax ginseng C.A. Meyer), one of the most widely used medicinal plants in traditional oriental medicine, is used for the treatment of various diseases. It has been classified according to its cultivation environment, such as field cultivated ginseng (FCG) and mountain cultivated ginseng (MCG). However, little is known about differences in gene expression in ginseng roots between field cultivated and mountain cultivated ginseng. In order to investigate the whole transcriptome landscape of ginseng, we employed High-Throughput sequencing technologies using the Illumina HiSeqTM2500 system, and generated a large amount of sequenced transcriptome from ginseng roots. Approximately 77 million and 87 million high-quality reads were produced in the FCG and MCG roots transcriptome analyses, respectively, and we obtained 256,032 assembled unigenes with an average length of 1,171 bp by de novo assembly methods. Functional annotations of the unigenes were performed using sequence similarity comparisons against the following databases: the non-redundant nucleotide database, the InterPro domains database, the Gene Ontology Consortium database, and the Kyoto Encyclopedia of Genes and Genomes pathway database. A total of 4,207 unigenes were assigned to specific metabolic pathways, and all of the known enzymes involved in starch and sucrose metabolism pathways were also identified in the KEGG library. This study indicated that alpha-glucan phosphorylase 1, putative pectinesterase/pectinesterase inhibitor 17, beta-amylase, and alpha-glucan phosphorylase isozyme H might be important factors involved in starch and sucrose metabolism between FCG and MCG in different environments.

• Asian-Australasian Journal of Animal Sciences
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• 제14권6호
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• pp.880-884
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• 2001

Rumen microbiology research has undergone several evolutionary steps: the isolation and nutritional characterization of readily cultivated microbes; followed by the cloning and sequence analysis of individual genes relevant to key digestive processes; through to the use of small subunit ribosomal RNA (SSU rRNA) sequences for a cultivation-independent examination of microbial diversity. Our knowledge of rumen microbiology has expanded as a result, but the translation of this information into productive alterations of ruminal function has been rather limited. For instance, the cloning and characterization of cellulase genes in Escherichia coli has yielded some valuable information about this complex enzyme system in ruminal bacteria. SSU rRNA analyses have also confirmed that a considerable amount of the microbial diversity in the rumen is not represented in existing culture collections. However, we still have little idea of whether the key, and potentially rate-limiting, gene products and (or) microbial interactions have been identified. Technologies allowing high throughput nucleotide and protein sequence analysis have led to the emergence of two new fields of investigation, genomics and proteomics. Both disciplines can be further subdivided into functional and comparative lines of investigation. The massive accumulation of microbial DNA and protein sequence data, including complete genome sequences, is revolutionizing the way we examine microbial physiology and diversity. We describe here some examples of our use of genomics- and proteomics-based methods, to analyze the cellulase system of Ruminococcus flavefaciens FD-1 and explore the genome of Ruminococcus albus 8. At Illinois, we are using bacterial artificial chromosome (BAC) vectors to create libraries containing large (>75 kbases), contiguous segments of DNA from R. flavefaciens FD-1. Considering that every bacterium is not a candidate for whole genome sequencing, BAC libraries offer an attractive, alternative method to perform physical and functional analyses of a bacterium's genome. Our first plan is to use these BAC clones to determine whether or not cellulases and accessory genes in R. flavefaciens exist in clusters of orthologous genes (COGs). Proteomics is also being used to complement the BAC library/DNA sequencing approach. Proteins differentially expressed in response to carbon source are being identified by 2-D SDS-PAGE, followed by in-gel-digests and peptide mass mapping by MALDI-TOF Mass Spectrometry, as well as peptide sequencing by Edman degradation. At Ohio State, we have used a combination of functional proteomics, mutational analysis and differential display RT-PCR to obtain evidence suggesting that in addition to a cellulosome-like mechanism, R. albus 8 possesses other mechanisms for adhesion to plant surfaces. Genome walking on either side of these differentially expressed transcripts has also resulted in two interesting observations: i) a relatively large number of genes with no matches in the current databases and; ii) the identification of genes with a high level of sequence identity to those identified, until now, in the archaebacteria. Genomics and proteomics will also accelerate our understanding of microbial interactions, and allow a greater degree of in situ analyses in the future. The challenge is to utilize genomics and proteomics to improve our fundamental understanding of microbial physiology, diversity and ecology, and overcome constraints to ruminal function.

• Biomolecules & Therapeutics
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• 제7권4호
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• pp.307-314
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• 1999

The human muscarinic acetylcholine receptor (mAChR) subtypes Hml, Hm2 and Hm3 have been expressed in insect cells (Spodoptera frugiperda, Sf9) using the baculovirus expression system. Expression of relevant DNA, transcript and receptor proteins was identified by PCR, Northern blotting and [$^{3}H$]QNB binding, respectively. As assessed by [$^{3}H$]QNB binding sites, yields of muscarinic receptors in membrane preparations in this study were as about 5-20 times high as those in mammalian cells reported in previous studies. The [$^{3}H$]QNB competition binding studies with well-known subtype-selective mAChR antagonists showed that the receptors expressed in Sf9 cells retain the pharmacological characteristics expected for the ml , m2 and m3 muscarinic receptors. The ml-selective antagonist, pirenzepine, displayed a considerably higher affinity for Hml by 110-fold and 35-fold than for Hm2 and Hm3, respectively, The m2-selective methoctramine displayed a significantly higher affinity for Hm2 than for Hml and Hm3 (10- and 26-fold, respectively). p-F-HHSiD exhibited high affinity for Hm3 that is not significantly different from those for Hml, but 66-fold higher than its affinity for Hm2. The functional coupling of the recombinant receptors to second messenger systems was also examined. While both Hml and Hm3 stimulated phosphoinositide hydrolysis upon activation by carba-chol, Hm2 produced no response. On the other hand, activation of mAChRs induced the inhibition of forsko-lin-stimulated cyclic AMP formation in Hm2-expressing cells, whereas the significant dose-dependent increase in or poor response on cyclic AMP formation were produced in Hml or Hm3-expressing cells, respectively. These results indicate the differential coupling of recombinant Hml, Hm2 and Hm3 receptors expressed in SF9 cells to intracellular signalling system.

• 대한방사선기술학회지:방사선기술과학
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• 제32권2호
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• pp.183-194
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• 2009

목 적 : 정상인 여성을 대상으로 기능적 자기공명영상법(functional magnetic resonance imaging : fMRI)을 이용하여 성적 흥분반응과 관련되는 시각자극과 삼음교(SP6, 三陰交) 경혈자극 의한 대뇌 활성화 영역의 차이점을 밝히고, 나아가서는 성적흥분의 기전을 신경해부학적인 측면에서 규명하고자 하였다. 대상 및 방법 : 성기능이 정상적인 오른손잡이 여자 21명(19$\sim$32세 : 평균 22세)을 대상으로 3.0 Tesla MR scanner를 이용하여 fMRI 영상을 얻었다. 성적 흥분을 유도하기 위한 패러다임은 3분간의 에로틱 비디오 시청과 삼음교(SP6)자침에 의한 자극을 주었으며, 자극 전 후에는 각각 1분간의 휴지기를 두었다. 또한 광명혈(GB37) 후방으로 3 cm 위치에 있는 비경혈점에 자극을 주어 경혈(acupoint)과 비경혈(shampoint) 자침에 의한 대뇌의 활성화 양상을 비교하였다. 기능적 자기공명영상의 획득은 AC-PC line을 기준으로 20개의 횡단면으로부터 총 2,000개의 기초영상을 얻었으며, SPM99 프로그램을 이용하여 평균 활성화 영상을 얻었다. 결 과 : 삼음교 경혈과 비경혈의 침자극에 의한 비교실험에서 경혈은 비경혈에 비하여 대뇌 신피질에서 평균 5배, 변연계에서 2배 높은 활성화도를 보였다. 비경혈 자극시에 간뇌의 HTHL, 기저핵의 GLO, AMYG, 그리고 두정엽의 SMG 등에서는 활성화 신호가 관찰되지 않았다. 성적흥분과 관련된 대뇌의 해부학적인 영역을 시각자극과 삼음교 경혈자극 별로 비교 분석한 결과, 두 자극간의 평균 활성화율(activation ratio)은 신피질과 변연계 모두에서 유의한 차이가 없었다(p < 0.05). 반면 평균 활성화도(activity)는 신피질의 경우에는 두 자극간에 유의한 차이를 보이지 않았으나, 변연계의 경우에는 경혈 자극시에 유의하게 더 높은 활성화도를 보였다(p < 0.05). 결 론 : 기능적 자기공명영상법을 이용하여 성적흥분과 관련된 시각자극과 경혈 침술자극에 의하여 유발된 대뇌 활성화 양상의 차이점과 신경해부학적 기전의 차이점을 규명할 수 있었으며, 이러한 결과를 바탕으로 향후 한방의 경혈, 경락 이론을 과학적인 측면에서 입증할 수 있을 것으로 기대한다.