• Genomics & Informatics
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• 제18권1호
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• pp.2.1-2.11
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• 2020

In this paper, we propose a new approach to detecting outliers in a set of segmented genomes of the flu virus, a data set with a heterogeneous set of sequences. The approach has the following computational phases: feature extraction, which is a mapping into feature space, alignment-free distance measure to measure the distance between any two segmented genomes, and a mapping into distance space to analyze a quantum of distance values. The approach is implemented using supervised and unsupervised learning modes. The experiments show robustness in detecting outliers of the segmented genome of the flu virus.

• Journal of Microbiology and Biotechnology
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• 제21권5호
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• pp.449-454
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• 2011

The infection of pandemic influenza viruses such as swine flu (H1N1) and avian flu viruses to the host cells is related to the following two factors: First, the surface protein such as HA (hemagglutinin) and NA (neuraminidase) of the influenza virus. Second, the specific structure of the oligosaccharide [sialic acid(${\alpha}2$-6) galactose(${\beta}1$-4)glucose or sialic acid(${\alpha}2$-3)galactose(${\beta}1$-4)glucose] on the host cell. After recognizing the specific structure of the oligosaccharide on the surface of host cells by the surface protein of the influenza virus, the influenza virus can secrete sialidase and cleave the sialic acid attached on the final position of the specific structure of the oligosaccharide on the surface of host cells. Tamiflu (oseltamivir), known as a remedy of swine flu, has a saccharide analog structure, especially the sialic acid analog. Tamiflu can inhibit the invasion of influenza viruses (swine flu and avian flu viruses) into the host cells by competition with sialic acid on the terminal position of the specific oligosaccharide on the surface of the host cell. Because of the emergence of Tamiflu resistance, the development of new potent anti-influenza inhibitors is needed. The inhibitors with positive-charge groups have potential as antiviral therapeutics, and the strain specificity must also be resolved.

• Biomolecules & Therapeutics
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• 제22권2호
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• pp.93-99
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• 2014

The interaction between viral HA (hemagglutinin) and oligosaccharide of the host plays an important role in the infection and transmission of avian and human flu viruses. Until now, this interaction has been classified by sialyl(${\alpha}2-3$) or sialyl(${\alpha}2-6$) linkage specificity of oligosaccharide moieties for avian or human virus, respectively. In the case of H5N1 and newly mutated flu viruses, classification based on the linkage type does not correlate with human infection and human-to-human transmission of these viruses. It is newly suggested that flu infection and transmission to humans require high affinity binding to the extended conformation with long length sialyl(${\alpha}2-6$)galactose containing oligosaccharides. On the other hand, the avian flu virus requires folded conformation with sialyl(${\alpha}2-3$) or short length sialyl(${\alpha}2-6$) containing trisaccharides. This suggests a potential future direction for the development of new species-specific antiviral drugs to prevent and treat pandemic flu.

• 약학회지
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• 제43권4호
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• pp.469-473
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• 1999

EA, the water soluble substance, was prepared from the carpophores of Elfvingia applanata (Pers). Karst. Anti-influenza A virus (anti-Flu A) activity of EA was examined of Vero cells by plaque reduction assay in vitro. And the combined antiviral effects fo EA with interferon (IFN) alpha and gamma were examined on the multiplication of Flu A with 50% effective concentration ($EC_50$) of 1.50 mg/ml. The results of combination assay were evaluated by the combination index (CI) that was analysed by the multiple drug effect analysis. The combination of EA with IFN alpha on Flu A showed more potent synergism with CI values of 0.50~0.52 of 50%, 70%, 90% effective levels than that with IFN gamma with CI values of 0.82~0.99.

• 기술사
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• 제42권6호
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• pp.42-46
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• 2009

Every year influenza contributes to the death of 72 people in the South korea, 20,000 in the U.S. and perhaps millions worldwide. The swine fever so-called the noble flu A H1N1, a strain of the flu virus, which jumped species and burst into the human population in March and April of this year. The outbreak of 2009 novel H1N1 was the fourth in 100 years. Fortunately, it led to today's comparatively tame swine flu than the vicious 1918, which was original H1N1 pandemic flu virus, killed at least 40 million worldwide in an ongoing pandemic era. Although the 2009 H1N1 which is still in full swing, this global flu epidemic is already teaching scientists valuable lessons about pandemics. Evidence accumulated these days indicates that the 2009 H1N1 was not entirely new to all human immune systems. This article introduces only an outline for our better understanding the basic mechanisms of influenza and the vaccination about longstanding fears of that worst-case scenario engendered pandemic that are paying off today.

• Clinical and Experimental Pediatrics
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• 제48권3호
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• pp.266-275
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• 2005

목 적 : 바이러스는 소아 하기도 감염증의 가장 흔한 원인으로 소아에서 흔히 이환되어 모세기관지염, 폐렴, 크룹, 기관 기관지염 등의 하기도 감염을 일으키는 원인 바이러스들로서 이들의 유행 시기 및 임상 양상을 조사하여 각 질환의 특성을 알아 보고자 하였다. 방 법 : 1998년 9월부터 2003년 5월까지 한림대학교 한강성심병원과 강남성심병원 소아과에 급성 호흡기 감염증으로 입원했던 환아 10,630명 중 총 4,554례에서 비인두 흡인물을 채취하여 바이러스 배양 및 단일 클론 항체를 이용한 면역 형광 검사법으로 881례(19%)에서 호흡기바이러스가 분리되었다. 그 중 모세기관지염, 폐렴, 크룹, 기관 기관지염 등의 급성 하기도 감염증으로 진단 받은 837례의 의무기록을 후향적으로 고찰하였다. 결 과 : 1) RSV가 485례(55%)로 가장 많았고, PIV 152례(17%), FluA 114례(13%), ADV 79례(9%), FluB 51례(6%) 순이었다. 2) 발생시기는 RSV의 경우 연중 발생하였고, 주로 11-12월에 많았다. PIV 매년 4-6월에 최고치를 이루었고, FluA는 매년 11-12월부터 다음해 1월까지 발생하였으나, 2002년 1월과 11월에 가장 많았다. FluB는 매년 3-4월에 유행하였고, 그 중 2002년 4월에 최고치를 이루었다. ADV는 연중 비슷하게 발생하였다. 3) 남녀 성별 비는 3 : 2로 남아가 더 많았고, 중앙연령은 9개월이었다. 4) 임상적 진단에는 세기관지염 395례(47%), 폐렴 305례(36%), 크룹73례(9%), 기관 기관지염 64례(8%)의 순이었고, RSV의 경우 세기관지염이 280례(60%)였다. 5) 임상증상 및 징후에는 각 바이러스 모두 기침(96%), 가래(83%), 비루(65%), 발열(61%)이 많았고, ADV는 설사(23%)가 다른 바이러스에 비해 많았다. 6) 청진 소견으로 천명음이 들렸던 경우는 RSV가 55%로 많았고, 수포음은RSV(47%), ADV(43%), FluA(40%) 순이었다. 건성수포음은 FluB가 49%로 많았으며, 협착음은 PIV가 27%로 높았다. 7) 말초 혈액 백혈구 수는 전체 62%에서 정상이었고, 36%에서 증가하였다. 적혈구 침강 속도는 30%에서 증가하였고, C 반응 단백은 20%에서 양성이었다. 8) 방사선 소견은 고찰이 가능하였던 803례 중 각 바이러스 모두 정상 소견이 557례(69%)로 가장 많았고, 특징적으로 하인두 확장은 PIV에서 31례(21%)로 현저하게 많았다. 결 론 : 소아에서 급성 하기도 감염증의 중요한 원인을 차지하는 호흡기 바이러스는 각각 발생시기 및 유행 양상에서 차이를 보였으나, 임상 양상은 서로 비슷하였고, 배양검사 결과가 확인되기 이전에 정확한 원인 바이러스를 예측하고 규명하기에는 어려운 점이 있었다. 이에 질병을 예측할 수 있는 신속한 진단법들이 개발되어 항바이러스제제를 적절한 시기에 선택하고 또한 예방접종시기를 예측하는데 도움이 되어야겠다.

• 한국육종학회지
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• 제40권2호
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• pp.106-112
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• 2008

International conferences to block the spread of Avian bird flu occurred in Beijing, 2006 and others warned of the seriousness of the H5N1 strain. The meetings succeeded in generating billions of dollars from USA, EU and World Bank. Migratory birds seem to play a major role in the spread of the aggressive strain globally from Asia to Europe and Africa. Experiences of tolerance breeding of maize (Zea mays L.) for four decades against 20 biotic stresses suggest that the prime cause of the occurrence of H5N1 strain was due to the human beings' counter-efforts against nature. Excessive use of chemicals (spray and injection) in the commercial poultry farms had created high selection pressure on virus. The new strain had mutated for survival. Attempting to eliminate the virus by chemicals for 100% control is a dangerous way to control biotic stresses. This can create more aggressive strains. A solution would be to build up tolerability of the commercial animals against the virus. Improvement of poultry cage environments and respect for nature must be integrated. Potential foes must be watched.

• 대한임상검사과학회지
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• 제42권1호
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• pp.1-15
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• 2010

Swine influenza virus (SIV) or swine-origin influenza virus (S-OIV) is endemic in swine, and classified into influenza A and influenza C but not influenza B. Swine influenza A includes H1N1, H1N2, H3N1, H3N2 and H2N3 subtypes. Infection of SIV occurs in only swine and that of S-OIV is rare in human. What human can be infected with S-OIV is called as zoonotic swine flu. Pandemic 2009 swine influenza H1N1 virus (2009 H1N1) was emerged in Mexico, America and Canada and spread worldwide. The triple-reassortant H1N1 resulting from antigenic drift was contained with HA, NA and PB1 of human or swine influenza virus, PB2 and PA polymerase of avian influenza virus, and M, NP and NS of swine influenza virus, The 2009 H1N1 enables to transmit to human and swine. The symptoms and signs in human infected with 2009 H1N1 virus are fever, cough and sore throat, pneumonia as well as diarrhea and vomiting. Co-infection with other viruses and bacteria such as Streptococcus pneumoniae can occur high mortality in high-risk population. 2009 H1N1 virus was easily differentiated from seasonal flu by real time RT-PCR which contributed rapid and confirmed diagnosis. The 2009 H1N1 virus was treated with NA inhibitors such as oseltamivir (Tamiflu) and zanamivir (Relenza) but not with adamantanes such as amantadine and rimantadine. Evolution of influenza virus has continued in various hosts. Development of a more effective vaccine against influenza prototypes is needed to protect new influenza infection such as H5 and H7 subtypes to infect to multi-organ and cause high pathogenicity.

• Pediatric Infection and Vaccine
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• 제20권3호
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• pp.178-185
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• 2013

목적: 다양한 바이러스 감염이 혈액학적 합병증, 특히 빈혈, 호중구 감소증 및 혈소판감소증과 같은 혈구 감소증을 일으킨다. 그러나 최근 호흡기 바이러스에 의한 혈액학적 합병증에 대해서는 제한적으로 보고되었다. 따라서 저자들은 호흡기 바이러스 양성 환자들을 대상으로 혈액학적 합병증과 그 임상 경과를 평가하기 위해 본 연구를 시행하였다. 방법: 2011년 10월부터 2012년 3월까지 6개월 동안 원광대학병원 소아청소년과에 입원한 496명의 소아청소년에서 호흡기 바이러스 multiplex reverse transcription polymerase chain reaction 결과와 혈액학적 소견을 후향적으로 분석하였다. 결과: 대상 환자 중 379명에서 호흡기 바이러스가 검출 되었다. 가장 흔한 바이러스는 respiratory syncytial virus (RSV) (55.7%)였으며, influenza A (Flu A) (23.0%) 순이었다. 혈구 감소증은 RSV감염 환자 35.5%에서 보였고, Flu A 25.0%, 기타 바이러스 34%에서 발생하였다. 각각의 바이러스는 혈구 감소증의 빈도와 유사하게 세 가지 혈구 세포를 감소시켰다. 379명 중 83명에서 빈혈이 나타났으며($9.71{\pm}1.09g/dL$); 46명에서 호중구 감소증이 나타났다($803.70{\pm}263.09/mm^3$); 23명에서 일시적인 혈소판 감소증이 나타났다($142,434.78{\pm}86,835.18/mm^3$). 그러나 어떠한 환아도 치료가 필요한 경우는 없었다. RSV와 Flu A군 간의 임상적 특징을 비교하였을 때, 빈혈이 있는 RSV군에서 입원기간이 더 길었다. 호중구 감소에서는 RSV군에서 나이가 더 어렸으며 입원 전 발열 기간이 더 짧았다. 결론: 본 연구에서 호흡기 바이러스 감염, 특히 RSV와 Flu A에서 다양하게 혈구 감소가 나타났으나 이들 합병증은 대부분 치료가 필요하지 않았으며 임상 경과에도 영향을 미치지 않았다.

• Journal of Yeungnam Medical Science
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• 제30권2호
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• pp.95-100
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• 2013

Background: This study was performed to investigate the epidemiologic and clinical features of acute respiratory viral infection in hospitalized children. Methods: From 2010 to 2012, we tested nasopharyngeal swab specimen in 1,584 hospitalized children with multiple real-time polymerase chain reactions to identify 10 kinds of respiratory viruses (including influenza virus A, B (FluA, FluB), respiratory syncytial virus (RSV), human metapneumovirus (MPV), adenovirus (AdV), human coronavirus (CoronaV), human enterovirus (HEV), human bocavirus (HBoV), parainfluenza virus (PIV), and human rhinovirus (Rhinovirus)). We analyzed the positive rate, annual and seasonal variations, and clinical features (respiratory tract and non-respiratory tract) according to the retrospective review of medical records. Results: Respiratory viruses were detected from 678 (42.8%) of 1,584 patients. The most common detected virus was RSV (35.0%), and then AdV (19.0%), HEV (18.1%). The critical period of the respiratory viral infection was during the first 12 months of a child's life. PIV increased by 8.4%, 12.1%, and 21.1% annually. Bronchiolitis was most frequently caused by RSV, and croup was frequently caused by PIV. The most common cause of meningitis was HEV. Hepatitis-associated respiratory virus was developed 111 in 678 cases. Conclusion: Although this study was confined to a single medical center for three years, we identified the epidemiology and clinical feature of respiratory viruses in Daegu from 2010 to 2012. Future surveillance will be necessary for annual and seasonal variations.