• BMB Reports
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• v.39 no.4
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• pp.361-370
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• 2006

Genetic variation and molecular phylogeny of 22 taxa representing 14 extant species and 3 unidentified taxa of Boesenbergia in Thailand and four outgroup species (Cornukaempferia aurantiflora, Hedychium biflorum, Kaempferia parviflora, and Scaphochlamys rubescens) were examined by sequencing of 3 chloroplast (cp) DNA regions (matK, psbA-trnH and petA-psbJ). Low interspecific genetic divergence (0.25-1.74%) were observed in these investigated taxa. The 50% majority-rule consensus tree constructed from combined chloroplast DNA sequences allocated Boesenbergia in this study into 3 different groups. Using psbA-1F/psbA-3R primers, an insertion of 491 bp was observed in B. petiolata. Restriction analysis of the amplicon (380-410 bp) from the remaining species with Rsa I further differentiated Boesenbergia to 2 groupings; I (B. basispicata, B. longiflora, B. longipes, B. plicata, B. pulcherrima, B. tenuispicata, B. thorelii, B. xiphostachya, Boesenbergia sp.1 and Boesenbergia sp.3; phylogenetic clade A) that possesses a Rsa I restriction site and II (B. curtisii, B. regalis, B. rotunda and Boesenbergia sp.2; phylogenetic clade B and B. siamensis; phylogenetic clade C) that lacks a restriction site of Rsa I. Single nucleotide polymorphism (SNP) and indels found can be unambiguously applied to authenticate specie-origin of all investigated samples and revealed that Boesenbergia sp.1, Boesenbergia sp.2 and B. pulcherrima (Mahidol University, Kanchanaburi), B. cf. pulcherrima1 (Prachuap Khiri Khan) and B. cf. pulcherrima2 (Thong Pha Phum, Kanchanaburi) are B. plicata, B. rotunda and B. pulcherrima, respectively. In addition, molecular data also suggested that Boesenbergia sp.3 should be further differentiated from B. longiflora and regarded as a newly unidentified Boesenbergia species.

• Korean Journal of Plant Taxonomy
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• v.40 no.1
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• pp.1-15
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• 2010

Recognizing a basal group in a taxon is one of the most important factors involved in understanding the evolutionary history of that group of life. Many botanists have suggested a sister to all other angiosperms to understand the origin and rapid diversification of angiosperms based on morphological and fossil evidence. Recent technical advances in molecular biology and the accumulation of molecular phylogenetic data have provided evidence of the extant basal-most angiosperm which is a sister to all other angiosperms. Although it is still arguable, most plant taxonomists agree that Amborella trichopoda Baill., a species (monotypic genus and monotypic family) distributed in New Caledonia, is a sister to all other extant angiosperms based on evidence from the following molecular approaches: 1) classical phylogenetic analyses based on multiple genes (or DNA regions), 2) analyses of a tree network of duplicated gene families, and 3) gene-structural evidence. As an alternative hypothesis with relatively minor evidence, some researchers have also suggested that Amborella and Nymphaeaceae form a clade that is a sister to all other angiosperms. Debate regarding the basal-most angiosperms is still ongoing and is currently one of the hot issues in plant evolutionary biology. We expect that sequencing of the whole genome of Amborella as an evolutionary model plant and subsequent studies based on this genome sequence will provide information regarding the origin and rapid diversification of angiosperms, which is Darwin's so called abominable mystery.

• Animal Systematics, Evolution and Diversity
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• v.29 no.1
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• pp.96-98
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• 2013

The Strombus Linn$\acute{e}$, 1758 is a genus of marine mollusks belonging to the class Gastropoda, and is distributed in the tropical waters of the world. Typically, the family Strombidae includes five extant genera (Strombus, Lambis, Terebellum, Tibia, and Rimella), all of which are mostly found in tropical waters. Five individuals of Strombus luhuanus Linn$\acute{e}$, 1758 were collected from Uljin, Gyeongsangbuk-do province for the first time. In this study, we describe details of shell morphology and radula characters of the species with scanning electron microscopy images of the radula. This is a new record of Strombus luhuanus Linn$\acute{e}$, 1758 from Korean waters.

• Journal of Ecology and Environment
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• v.43 no.2
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• pp.271-281
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• 2019

Background: The plant communities within reservoir drawdown zones are ecologically important as they provide a range of ecosystem services such as stabilizing the shoreline, improving water quality, enhancing biodiversity, and mitigating climate change. The aim of the study was therefore to identify the major environmental factors affecting these plant communities within the drawdown zone of the Soyangho Reservoir in South Korea, which experiences a monsoonal climate, and thereafter to (1) elucidate the plant species responses and (2) compare the soil seedbank composition along main environmental gradients. Results: Two main environmental gradients affecting the plant community structure were identified within the drawdown zone; these were a vertical and longitudinal gradient. On the vertical dimension, a hydrological gradient of flood/exposure, the annual-dominated plant community near the water edge changed to a perennial-dominated community at the highest elevation. On the longitudinal dimension from the dam to the upstream, plant species composition changed from an upland forest-edge community to a lowland riverine community, and this was correlated with slope degree, soil particle size, and soil moisture content. Simultaneously, the composition of the soil seedbank was separated along the vertical gradient of the drawdown zone, with mainly annuals near the water edge and some perennials at higher elevations. The species composition similarity between the seedbank and extant vegetation was greater in the annual communities at low elevation than in the perennial communities at higher elevation. Conclusions: The structures of plant community and soil seedbank in the drawdown zone of a monsoonal riverine reservoir were changed first along the vertical and secondly along the longitudinal gradients. The soil seedbank could play an important role on the vegetation regeneration after the disturbances of flood/exposure in the drawdown zone. These results indicate that it is important to understand the vertical and longitudinal environmental gradients affecting shoreline plant community structure and the role of soil seedbanks on the rapid vegetation regeneration for conserving and restoring the drawdown zone of a monsoonal reservoir.

• Journal of the Korean earth science society
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• v.29 no.4
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• pp.319-327
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• 2008

A paleobotanical study of the Metasequoia has been carried out from the Miocene Keumkwangdong Formation of the non-marine Janggi Group in the Pohang Basin. As a result of this study, deciduous leafy shoots mostly belong to a single species of Metasequoia occidentalis. This species is characterized by its opposite leaves with decurrent base, and by its presence of scale leaf at base of petiole. This species is common in the Korean Tertiary floras in Miocene age, yet it has not been recorded in the Korean Peninsula after Miocene. Based on the distribution and ecology of extant Metasequoia. it is considered that the Metasequoia might have flourished in the fluvial plains as swamp forest.

• ALGAE
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• v.34 no.2
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• pp.127-140
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• 2019

The species in the dinoflagellate order Suessiales have 5-24 latitudinal paraplate series and include many fossil and extant species. There have been a few studies on the ecophysiology of the phototrophic species Biecheleriopsis adriatica, and no study on its predators. Thus, we explored the feeding occurrence by common heterotrophic protists on B. adriatica and the growth and ingestion rates of the heterotrophic dinoflagellate Oxyrrhis marina on B. adriatica BATY06 as a function of prey concentration. The common heterotrophic dinoflagellates Aduncodinium glandula, O. marina, Gyrodinium dominans, Gyrodinium moestrupii, Luciella masanensis, Pfiesteria piscicida, and Oblea rotunda and two naked ciliates Strombidinopsis sp. and Pelagostrobilidium sp. were able to feed on B. adriatica, but the heterotrophic dinoflagellate Polykrikos kofoidii was not. However, B. adriatica supported the positive growth of O. marina, but did not support that of G. dominans and O. rotunda. With increasing prey concentrations, the growth and ingestion rates of O. marina on B. adriatica increased and became saturated. The maximum growth rate of O. marina on B. adriatica was $0.162d^{-1}$. Furthermore, the maximum ingestion rate of O. marina on B. adriatica was $0.2ng\;C\;predator^{-1}\;d^{-1}$ ($2.0cells\;predator^{-1}\;d^{-1}$). In the order Suessiales, the feeding occurrence by common heterotrophic protists on B. adriatica is similar to that on Effrenium voratum and Biecheleria cincta, but different from that on Yihiella yeosuensis. However, the growth and ingestion rates of O. marina on B. adriatica are considerably lower than those on E. voratum and B. cincta, but higher than those on Y. yeosuensis. Therefore, B. adriatica may be less preferred prey for O. marina than E. voratum and B. cincta, but more preferred prey than Y. yeosuensis.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.14 no.6
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• pp.57-69
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• 2011

The present paper deals with a research of life form and vegetation of the plants extant in the habitat of endangered Parnassius bremeri in Uiseong, Gyeongsangbuk-do with a view to restore their habitat and create substitute habitats. The research found that there are a total of 130 vascular plants including 47 families, 96 genera, 113 species, 1 subspecies and 16 varieties. In terms of their life form, hemicryptophytes (H) is the majority of dormancy form with 41 species or 31.54%, while $R_5$ is majority of radicoid form with 72 species or 55.38%, gravitational disseminule form ($D_4$) is majority among the disseminule forms with 68 species or 52.31% and erect type (e) is majority of growth form with 57 species or 43.85%. Major constituents of the habitat are Sedum kamtschaticum, Selaginella tamariscina, Orostachys japonica, Arundinella hirta, Cymbopogon tortilis var. goeringii, Themeda triandra var. japonica, Carex humilis, Indigofera kirilowii, Imperata cylindrica var. koenigii, Festuca ovina, Artemisia capillaris, etc., all of species which are in the initial stage of succession and show simultaneously features characteristic of vegetation on the rock. In the habitat 1. Sedum kamtschaticum- Selaginella tamariscina community and Pinus densiflora community are distributed whereas, in the habitat 2. Sedum kamtschaticum-Selaginella tamariscina community, Sedum kamtschaticum-Carex humilis community, Sedum kamtschaticum-Cymbopogon tortilis var. goeringii community and Sedum kamtschaticum-Imperata cylindrica var. koenigii community are growing and in the habitat 3. Sedum kamtschaticum-Selaginella tamariscina community, Selaginella tamariscina community, Sedum kamtschaticum-Indigofera kirilowii community and Quercus acutissima community are seen distributed there, too. Typical of food plants growing in the habitat is Sedum kamtschaticum, found mostly in the rocky area and its surroundings. Absorption plants are those that usually bloom in the season when imagoes emerge. From the research, it becomes evident that the blooming season of Sedum kamtschaticum, obviously a food plant, corresponds exactly to the emergence timing of imagoes. Cirsium japonicum var. ussuriense, Rosa multiflora, Erigeron annuus, Spiraea prunifolia var. simpliciflora are found to belong to these plants.

• Journal of the Korean earth science society
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• v.38 no.4
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• pp.293-302
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• 2017

A large number of stonefly nymph fossils were discovered from the Late Triassic Amisan Formation in the Boryeong region, Korea. These Plecoptera were classified as Platyperlidae, Baleyopterygidae, and Siberioperlidae based on their external morphologies. The Baleyopterygidae were most abundant among the fossils. This suggests that the plecopteran has already been widely distributed in the Northeast Asian region including Russia, Mongolia and China during the Mesozoic. The fossils of these stoneflies imply that benthic habitats of flowing and fresh waters may have existed, given the fact that they are similar with the biology of extant species. These Plecoptera were found together with Ephemeroptera and Conchostraca and thus, they were presumed to be preying on these insects.

• Fisheries and Aquatic Sciences
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• v.20 no.6
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• pp.8.1-8.18
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• 2017

Background: Metallothionein (MT) is a multifunctional protein playing important roles in homeostatic regulation and detoxification of metals. Mollusk species have been considered as useful sentinel platforms for MT-based biomarker approaches, and they have been reported to display an extraordinary structural diversity of MT proteins. However, potential diversity of molluskan MTs has not been fully explored and recent updates have suggested the need of revision of evolutionary hypothesis for molluskan MTs. Results: Based on bioinformatic analysis and phylogenetic evidences, novel divergence mechanisms and paths were hypothesized in both gastropod and bivalve MT groups. Our analyses are suggestive of the taxon- or lineage-specific domain multiplication/duplication from the ancestral or prototypic MT. Diversification and selection of molluskan MTs might be driven by the needs for acquiring metal selectiveness, specialized novel function, and improved capacity of metal detoxification under environmentally stressed conditions. Conclusion: The structural diversity and variations of molluskan MTs are significantly larger than previously understood. Undoubtedly, molluskan MTs have undergone dynamic divergent processes in their evolutionary histories, giving rise to the great diversity of domain structures in extant MT isoforms. Novel evolutionary paths for molluskan MTs newly proposed in this review could shed additional light onto the revision of the hypothesis for evolutionary differentiation of MTs in the molluskan lineage.

• Molecules and Cells
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• v.20 no.3
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• pp.325-330
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• 2005

Ancient cattle bones were excavated from archaeological sites in Jeju, Korea. We used molecular genetic techniques to identify the species and establish its relationship to extant cattle breeds. Ancient DNA was extracted from four sources: a humerus (Gonae site, A.D. 700-800), two fragments of radius, and a tooth (Kwakji site, A.D. 0-900). The mitochondrial DNA (mtDNA) D-loop regions were cloned, sequenced, and compared with previously reported sequences of various cattle breeds (9 Asian, 8 European, and 3 African). The results revealed that these bones were of the breed, Bos taurus, and a phylogenetic tree indicated that the four cattle bones formed a monophyletic group with Jeju native black cattle. However, the patterns of sequence variation and reports from archaeological sites suggest that a few wild cattle, with a different maternal lineage, may have existed on Jeju Island. Our results will contribute to further studies of the origin of Jeju native cattle and the possible existence of local wild cattle.