• 제목/요약/키워드: e-exact sequence

검색결과 15건 처리시간 0.023초

Purification and Characterization of Glycerate Kinase From the Thermoacidophilic Archaeon Thermoplasma acidophilum: An Enzyme Belonging to the Second Glycerate Kinase Family

  • Noh, Mi-Young;Jung, Jin-Hwa;Lee, Sun-Bok
    • Biotechnology and Bioprocess Engineering:BBE
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    • 제11권4호
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    • pp.344-350
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    • 2006
  • Thermoplasma acidophilum is a thermoacidophilic archaeon that grows optimally at $59^{\circ}C$ and pH 2. Along with another thermoacidophilic archaeon, Sulfolobus solfataricus, it is known to metabolize glucose by the non-phosphorylated Entner-Doudoroff (nED) pathway. In the course of these studies, the specific activities of glyceraldehyde dehydrogenase and glycerate kinase, two enzymes that are involved in the downstream part of the nED pathway, were found to be much higher in T. acidophilum than in S. solfataricus. To characterize glycerate kinase, the enzyme was purified to homogeneity from T. acidophilum cell extracts. The N-terminal sequence of the purified enzyme was in exact agreement with that of Ta0453m in the genome database, with the removal of the initiator methionine. Furthermore, the enzyme was a monomer with a molecular weight of 49kDa and followed Michaelis-Menten kinetics with $K_m$ values of 0.56 and 0.32mM for DL-glycerate and ATP, respectively. The enzyme also exhibited excellent thermal stability at $70^{\circ}C$. Of the seven sugars and four phosphate donors tested, only DL-glycerate and ATP were utilized by glycerate kinase as substrates. In addition, a coupled enzyme assay indicated that 2-phosphoglycerate was produced as a product. When divalent metal ions, such as $Mn^{2+},\;CO^{2+},\;Ni^{2+},\;Zn^{2+},\;Ca^{2+},\;and\;Sr^{2+}$, were substituted for $Mg^{2+}$ the enzyme activities were less than 10% of that obtained in the presence of $Mg^{2+}$. The amino acid sequence of T. acidophilum glycerate kinase showed no similarity with E. coli glycerate kinases, which belong to the first glycerate kinase family. This is the first report on the biochemical characterization of an enzyme which belongs to a member of the second glycerate kinase family.

HRTF Measurement and Its Application for 3-D Soung Localization

  • Kang, Kyeong Ok;Kang, Dong-Gyu;Hahn, Minsoo;Jho, Moon Jae;Jeong, Dae-Gwon
    • The Journal of the Acoustical Society of Korea
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    • 제16권3E호
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    • pp.50-55
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    • 1997
  • Based on the anthropometric data of Korea male adults, a head and torso simulator(HATS) is constructed to measure its head related transfer functions (HRTFs) which can be used for three dimensional (3-D) sound localization. The HRTFs binaural impulse responses, are measured in an anechoic chamber using a burst maximum length sequence (MLS) signal of 65,535 samples and 32,768 samples acquisition at the sampling rate of 75.47kHz. Also measured are the impulse responses of a driving loudspeaker and some headphones for sound reproduction to get the exact HRTF of the HATS-alone. Through a post-processing procedure, the impulse-version HRTFs at the sampling frequency of 44.1 kHz, which have filter lengths of 512 points, are finally obtained. As an application of the measured HRTFs, a 3-D sound processor for headphone reproduction has been developed. The signal intervals to be processed can be selected and each interval is manipulated to have its diretionality and distance information by using corresponding HRTF and energy control.

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교통난 계측 I-초음파용 공간필터법에 의하여- (A Measurement of Traffic Vehicles Flow by the Ultrasonic Spatial Filtering Method)

  • 전승환
    • 한국항해학회지
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    • 제20권2호
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    • pp.51-58
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    • 1996
  • For the smooth flow of traffic vehicles and its effective management, it is necessary to have an exact information on traffic condition, i.e., the volume of traffic, velocity, occupancy and classification of vehicles. In particular, for classification of vehicles, there has been only image processing method using camera, where the method can obtain much information but rather expensive. In this paper, an algorithm for the measurement of velocity and total length of vehicles has been proposed to develop a general traffic management system, which is necessary to discriminate the class of vehicles. In order to realize the proposed algorithm, we have developed an ultrasonic spatial filtering method, which has better performance than that of using the traditional vehicle detector. To have this system to be constructed, we have introduced three sets of ultrasonic devices where each has one transmitter and two receivers which are arranged to obtain the spatial difference of objects. The velocity of vehicles can be measured by analyzing the occurrence time of pulses and their time differences. The total length of vehicles can be given by multiplying velocity with time interval of pulses sequence. To confirm the effectiveness of this measuring system, the experiment by the spatial filtering method using the ultrasonic sensors has been carried out. As the results, it is found that the proposed method can be used as one of measurement tools in the general traffic management system.

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발현ㆍ분비 벡터 및 임상 균주가 생성하는 신규 AmpC-type $\beta$-lactamase의 특성 (Characterization of Noble AmpC-Type $\beta$-Lactamases Among Clinical Isolates Using New Expression/Secretion Vector)

  • 정하일;성광훈;이정훈;장선주;이상희
    • 미생물학회지
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    • 제40권2호
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    • pp.104-110
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    • 2004
  • 임상균주인 Enterobacter spp.가 생성하는 신규 chromosomal AmpC $\beta$-lactamases의 유전자형 및 진화적 측면을 고찰하기 위해서 항생제 감수성 시험, pI값 측정, DNA 염기서열 분석, 진화적 유연관계를 새로운 발현$.$분비 벡터를 이용하여 수행하였다. 6개 임상균주에서 cephamycins (cefoxitin and cefotetan), amoxicillin, cephalothin 및 amoxicillin-clavulanic acid에 내성 요인인 AmpC $\beta$-lactamase 유전자를 pMSG1219에 cloning하여 그 특성을 조사하였다. 381-amino-acid $\beta$-lactamase를 암호화 하는 4개의 ampC 유전자($bla_EcloK992004.1$, $bla_EcloK995120.1$, $bla_EcloK99230$$bla_EareK9911729$)는 E. cloacae MHN1의 chromosomal ampC 유전자($bla_EcloMHN1$)와 99.6% 이상의 상동성을 나타냈으며 두 ampC 유전자($bla_Eclok9973$ and $bla_EcloK9914325$)는 E. cloacae 908R의 chromosomal ampC 유전자($bla_EcloQ9908R$)와 99.7% 상동성을 나타냈다. 이런 결과는 6개 ampC 유전자가 $bla_EcloMHN1$ or $bla_EcloQ9908R$로부터 유래되었음을 시산한다. 발현ㆍ분비 벡터를 이용하여 제조한 6개 transformant의 MIC값 양상 및 정확한 pI값은 E. coli 균주에 외부 유전자의 특성을 고찰하는 목적에 개발된 발현$.$분비 백터(pMSG1219)가 유용함을 의미한다.

Neurokinin B-related Peptide Suppresses the Expression of GnRH I, Kiss2 and tac3 in the Brain of Mature Female Nile tilapia Oreochromis niloticus

  • Jin, Ye Hwa;Park, Jin Woo;Kim, Jung-Hyun;Kwon, Joon Yeong
    • 한국발생생물학회지:발생과생식
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    • 제20권1호
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    • pp.51-61
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    • 2016
  • Neurokinin B (NKB) and neurokinin B related peptide (NKBRP) belong to tachykinin peptide family. They act as a neurotransmitter and/or neuromodulator. Mutation of NKB and/or its cognate receptor, NK3R resulted in hypogonadotropic hypogonadism in mammals, implying a strong involvement of NKB/NK3R system in controlling mammalian reproduction. Teleosts possess NKBRP as well as NKB, but their roles in fish reproduction need to be clarified. In this study, NKB and NKBRP coding gene (tac3) was cloned from Nile tilapia and sequenced. Based on the sequence, Nile tilapia NKB and NKBRP peptide were synthesized and their biological potencies were tested in vitro pituitary culture. The synthetic NKBRP showed direct inhibitory effect on the expression of GTH subunits at the pituitary level. This inhibitory effect was confirmed in vivo by means of intraperitoneal (ip) injection of synthetic NKB and NKBRP to mature female tilapia (20 pmol/g body weight [BW]). Both NKB and NKBRP had no effect on the plasma level of sex steroids, E2 and 11-KT. However, NKBRP caused declines of expression level of GnRH I, Kiss2 and tac3 mRNAs in the brain while NKB seemed to have no distinct effect. These results indicate some inhibitory roles of NKBRP in reproduction of mature female Nile tilapia, although their exact functions are not clear at the moment.