• Mycobiology
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• v.49 no.1
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• pp.61-68
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• 2021

Agaricus bisporus, commonly known as the button mushroom, is widely cultivated throughout the world. To breed new strains with more desirable traits and improved adaptability, diverse germplasm, including wild accessions, is a valuable genetic resource. To better understand the genetic diversity available in A. bisporus and identify previously unknown diversity within accessions, a phylogenetic analysis of 360 Agaricus spp. accessions using single-nucleotide polymorphism genotyping was performed. Genetic relationships were compared using principal coordinate analysis (PCoA) among accessions with known origins and accessions with limited collection data. The accessions clustered into four groups based on the PCoA with regard to genetic relationships. A subset of 67 strains, which comprised a core collection where repetitive and uninformative accessions were not included, clustered into 7 groups following analysis. Two of the 170 accessions with limited collection data were identified as wild germplasm. The core collection allowed for the accurate analysis of A. bisporus genetic relationships, and accessions with an unknown pedigree were effectively grouped, allowing for origin identification, by PCoA analysis in this study.

• Journal of Communications and Networks
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• v.12 no.1
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• pp.11-18
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• 2010

Diversity-multiplexing tradeoff (DMT) is an efficient tool to measure the performance of multiple-input and multiple-output (MIMO) systems and cooperative systems. Recently, cooperative multicast system with wireless network coding stretched tremendous interesting due to that it can drastically enhance the throughput of the wireless networks. It is desirable to apply DMT to the performance analysis on the multicast system with wireless network coding. In this paper, DMT is performed at the three proposed wireless network coding protocols, i.e., non-regenerative network coding (NRNC), regenerative complex field network coding (RCNC) and regenerative Galois field network coding (RGNC). The DMT analysis shows that under the same system performance, i.e., the same diversity gain, all the three network coding protocols outperform the traditional transmission scheme without network coding in terms of multiplexing gain. Our DMT analysis also exhibits the trends of the three network coding protocols' performance when multiplexing gain is changing from the lower region to the higher region. Monte-Carlo simulations verify the prediction of DMT.

• Journal of Animal Reproduction and Biotechnology
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• v.36 no.3
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• pp.154-161
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• 2021

A number of Korean Chicken breeds were registered in Domestic Animal Diversity Information System (DAD-IS, http://dad.fao.org/) of the Food and Agriculture Organization (FAO). Evaluation of genetic diversity and relationship of local breeds is an important factor towards the identification of unique and valuable genetic resources. Therefore, this study aimed to analysis the genetic diversity and relationship of 22 Korean Chicken breeds using 12 microsatellite (MS) markers. The mean number of alleles for each variety was 5.52, ranging from a 3.75 (Leghorn F; NF) to a 7.0 (Ross). The most diverse breed was the Hanhyup3 (HCC), which had the highest expected heterozygosity (H_Exp) (0.754) and polymorphic information content (PIC) (0.711). The NF was the least diverse population, having the lowest H_Exp (0.467) and PIC (0.413). As a result of the principal coordinates analysis (PCoA) and factorial correspondence analysis (FCA) confirmed that Hy-line Brown (HL) and Lohmann Brown (LO) are very close to each other and that Leghorn and Rhode Island Red (RIR) are clearly distinguished from other groups. Thus, the reliability and power of identification using 12 types of MS markers were improved, and the genetic diversity and probability of individual discrimination were confirmed through statistical analysis. This study is expected to be used as basic data for the identification of Korean chicken breeds, and our results indicated that these multiplex PCR marker sets will have considerable applications in population genetic structure analysis.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.18 no.3
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• pp.39-50
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• 2015

This research selected Daegu Metropolitan City representing a combination of natural space and urban space for this case study. To achieve this, a prerequisite was to set up an optimal block size to evaluate landscape diversity of the research site by using a RPR-Area Curve. Further, landscape diversity evaluation was conducted based on land cover map by using FRAGSTATS to analyze spatio-temporal changes. Notably, this research regarded it as the most significant to set forth criteria in order to apply landscape diversity to the development plans of the newtown and outskirt of a city under high pressure development. Results derived from this research are summarized as follows. According to the results derived from establishing the optimal block size, a size about $2km^2$ was analyzed to measure landscape diversity of the research site. Also, according to the results derived from land diversity evaluation based on land cover map, land diversity was highly measured around urban stream such as Nakdong River and Geumho River, and in particular, the value of landscape diversity was measured considerably high around the urban parks. Results derived from analysis on spatio-temporal changes of land diversity demonstrated that a certain level of urban development exerted a positive effect on an increase in land diversity, but consistent urban development lowered a value of landscape diversity. Results derived from regression analysis to set forth the optimal urban space showed that an urban area of a space about $2km^2$ exerted a positive effect at a rate of about 0~43.3% and a negative effect at a rate about 43.3~100%. In conclusion, the results of this research are considered to provide important basic data for future urban and landscape planning. Nonetheless, as only the layout on the 2D plane was analyzed in this research, further research in future is required to complexly consider diverse factors such as height of structure and change in visible real area arising from geographical features.

• Journal of Forest and Environmental Science
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• v.26 no.1
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• pp.1-7
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• 2010

Species diversity is one of the most important specifications of biological societies. Diversity of organisms, measurement of variety and examination of those hypotheses that are about reasons of diversity are such as affairs that have been desired by the ecologists for a long time. In this research, diversity of plant species in forest region, numbers of 60 sample plots in 256.00 square meters have been considered in random - systematic inventory was considered. In each sample plot, four micro-plots in 2.25 square meters in order to study on herbal cover, were executed that totally 240 micro-plots were considered. At each plot six diversity indices in relation to physiographic factors (slope, geographical aspect and altitude from the sea level) were studied. The results indicate that species diversity is more in the northern direction and also species diversity in slops less than 30% has the most amounts. Factor of altitude from the sea level did not have meaningful relation with species diversity. Through study on correlation of the numbers of species in sample plots with indices and also process and role of indices in different processors of analysis, Simpson's reciprocal index was suggested as suitable index in this type of studies.

• Korean Journal of Environmental Biology
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• v.18 no.1
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• pp.53-61
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• 2000

In order to characterize the genetic diversity of bacterial community in groundwater, samples were collected from used for drinking water and polluted with heavy metal wastewater in Seoul city and natural cave of Kangwondo. The DNA was amplified with 165 rDNA-based primers by use of the PCR, and then analysed ARDRA (amplified ribosomal DNA restriction analysis). Restriction endonuclease analysis patterns of amplified 165 rDNA in drinking water and wastewater relatively showed high genetic diversity in situ and drinking groundwater. The number of DNA fragments varied with in situ and drinking water. This method of ARDRA of bacterial communities in groundwater could be used for a quick assessment of genotypic changes between different locations reflecting different environmental conditions and the diversity reflected pollution of groundwater (natural cave water>drinking water>waste water, as in order of grade). [Genetic diversity, Groundwater, 165 rDNA, PCR, ARDRA].

• Journal of the Korean Society of Environmental Restoration Technology
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• v.21 no.1
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• pp.73-82
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• 2018

Urban parks are important bird habitat in cities. Various studies have evaluated the habitat function of urban parks focused on field surveys. In this study, we performed applicability of NDVI obtained from Landsat 8 OLI image as a factor for spatial planning considered bird diversity. This study was classified with green boundary into three groups using NDVI's value. Environmental variables were calculated by the green area ratio of the surrounding area from 100m to 500m at each groups. The 20 environmental variables such as park area, park shape index, canopy of tree, etc. were derived, the regression analysis was performed as a dependent variable for the bird diversity of urban parks. As a result, the park area and the green area ratio of Group 3, classified high NDVI, within the 100m buffer were adopted as the variables in the regression model. In other words, it was confirmed that as the park becomes larger, the distribution of key green areas within a radius of 100m of the parks becomes higher, the diversity of bird species has increased. It was appropriate to use satellite image, NDVI to analyze species diversity in urban area.

• Journal of electromagnetic engineering and science
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• v.11 no.2
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• pp.133-142
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• 2011

Coded cooperation that integrates channel coding in cooperative transmission has gained a great deal of interest in wireless relay networks. The performance analysis of coded cooperation protocol with multiple relays is investigated in this paper. We show that the diversity order achieved by the coded cooperation in a multi-relay wireless network is not only dependent on the number of cooperating relays but is also dependent on the code-rate of the system. We derive the code-rate bound, which is required to achieve the full diversity gain of the order of cooperating nodes. The code-rate required to achieve full diversity is a linearly decreasing function of the number of available relays in the network. We show that the instantaneous channel state information (CSI)-based relay selection can effectively alleviate this code-rate bound. Analysis shows that the coded cooperation with instantaneous CSI-based relay selection can achieve the full diversity, for an arbitrary number of relays, with a fixed code-rate. Finally, we develop tight upper bounds for the bit error rate (BER) and frame error rate (FER) of the relay selection based on coded cooperation under a Rayleigh fading environment. The analytical upper bounds are verified with simulation results.

• Proceedings of the Plant Resources Society of Korea Conference
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• 2019.04a
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• pp.61-61
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• 2019

In any crop breeding program Selection and use of genetically diverse genotypes to develop cultivars with a broad genetic base is important. Molecular markers play a major role in selecting diverse genotypes. Molecular breeding programs of the crop can be made more efficient by use of molecular markers. The present study was done with an aim of analyzing genetic diversity and the population structure in 24 accessions of sunflower (Helianthus annus L.) from Kenya genetic diversity using 35 EST-SSR and gSSR primers.Out of the 35 markers 3 were not polymorphic as they indicated Polymorphic Information content( PIC) of value 0.00 and so the data analysis was done using 32 markers . The 32 set of markers used produced 29 alleles ranging from 2 to 7with a mean of 3.0 alleles per locus.The average value of polymorphic information contents(PIC) were 0.3 .Genetic diversity analysis using these markers revealed 3 major clusters. This result could be useful for designing strategies to make elite hybrid and inbreeding of crossing block for breeding and future molecular breeding programs to make elite variety.

• Asian-Australasian Journal of Animal Sciences
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• v.32 no.12
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• pp.1907-1913
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• 2019

Objective: Homoacetogens play important roles in the production of acetate in the large intestine of monogastric mammals. However, their diversity in the porcine large intestine is still unknown. Marker gene analysis was performed to assess the effects of energy level on the diversity and population densities of homoacetogens in porcine feces. Methods: Crossbred pigs were fed high or low energy-level diets. The high-intake (HI) diet was sufficient to allow a daily gain of 1.2 kg. The low-intake (LI) diet provided 0.6 times the amount of energy as the HI diet. Genetic diversity was analyzed using formyltetrahydrofolate synthetase gene (FHS) clone libraries derived from fecal DNA samples. FHS DNA copy numbers were quantified using real-time polymerase chain reaction. Results: A wide variety of FHS sequences was recovered from animals in both treatments. No differences in FHS clone libraries between the HI and LI groups were found. During the experimental period, no significant differences in the proportion of FHS copy numbers were observed between the two treatment groups. Conclusion: This is the first reported molecular diversity analysis using specific homoacetogen marker genes from the large intestines of pigs. There was no observable effect of feed intake on acetogen diversity.