• Asian-Australasian Journal of Animal Sciences
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• 제26권1호
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• pp.19-29
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• 2013

Marbling (intramuscular fat) is an important trait that affects meat quality and is a casual factor determining the price of beef in the Korean beef market. It is a complex trait and has many biological pathways related to muscle and fat. There is a need to identify functional modules or genes related to marbling traits and investigate their relationships through a weighted gene co-expression network analysis based on the system level. Therefore, we investigated the co-expression relationships of genes related to the 'marbling score' trait and systemically analyzed the network topology in Hanwoo (Korean cattle). As a result, we determined 3 modules (gene groups) that showed statistically significant results for marbling score. In particular, one module (denoted as red) has a statistically significant result for marbling score (p = 0.008) and intramuscular fat (p = 0.02) and water capacity (p = 0.006). From functional enrichment and relationship analysis of the red module, the pathway hub genes (IL6, CHRNE, RB1, INHBA and NPPA) have a direct interaction relationship and share the biological functions related to fat or muscle, such as adipogenesis or muscle growth. This is the first gene network study with m.logissimus in Hanwoo to observe co-expression patterns in divergent marbling phenotypes. It may provide insights into the functional mechanisms of the marbling trait.

• Asian-Australasian Journal of Animal Sciences
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• 제19권5호
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• pp.617-621
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• 2006

Recently the numbers of the Thai swamp buffalo (Bubalus bubalis), a native species of Thailand, have been rapidly declining, leading to a requirement for conservation programs for this breed. Such studies of the genetic diversity of this species are essential for conservation decisions and to assist the rational implementation of breeding programs. In this study, the genetic diversity of 80 Thai swamp buffalo, randomly selected from seven different research stations of the Thai Department of Livestock Development, were studied using ten cattle microsatellite markers. Polymorphic PCR products were observed at all microsatellite loci, with percentages of polymorphic loci ranging from 80.00 to 100.00%. The population from Payao showed the lowest level of polymorphism. The mean number of alleles per locus was 4.7 with the highest number of alleles being eight (ETH152) and the lowest being three (HAUT27 and ILSTS030). The average unbiased heterozygosity for all seven populations was 0.61 and varied between 0.5314 (Samui) and 0.6798 (Surin). The genetic distance according to NEI's (1972) ranged from 0.0722 to 0.4427. The populations from Surin and Burirum are the closest populations, while populations from Samui and Payao are the most divergent. The information generated by this study will greatly aid in the establishment of effective breeding and conservation programs for the Thai swamp buffalo.

• Asian-Australasian Journal of Animal Sciences
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• 제17권7호
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• pp.903-909
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• 2004

The variability of mtDNA hypervariable segment I (HVS I) sequences was investigated in a total of 48 birds belonging to 12 Chinese native chicken breeds. Sixteen haplotypes were identified from 35 polymorphic nucleotide sites which accounted for 6.4% of a sequenced 544 bp fragment. Diversity analysis of the haplotypes showed that Tibetan, Langshan and Henan cockfight chicken had only one haplotype, while ancient haplotypes existed in Taihe silky and Chahua chicken. Phylogenetic analysis of the haplotypes suggested that Chinese native chicken breeds shared 5 maternal lineages and some breeds would share the same maternal lineage, regardless of their external features and ecological types. Both divergent and phylogenetic analysis of the haplotypes indicated the close genetic relationships between the Chinese native chicken breeds and G. g. gallus and G. g. spadiceus from different areas, which implied that G. g. gallus and G. g. spadiceus were the original ancestors of the Chinese native chicken breeds.

• Asian-Australasian Journal of Animal Sciences
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• 제7권3호
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• pp.441-448
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• 1994

Postweaning performance data were obtained on 187 group fed purebred Angus calves from 12 selected sires (six high and six low feed conversion sires) in 1985 and 1986. The objective of this portion of the study was to develop prediction equations for feed conversion from a stepwise regression analysis. Variables measured were on-test weight (ONTSTWT), on-test age (ONTSTAG), five weights by 28-d periods, seven linear body measurements: heart girth (HG), hip height (HH), head width (HDW), head length (HDL), muzzle circumference (MC), length between hooks and pins (HOPIN) and length between shoulder and hooks (SHHO), and backfat thickness (BF). Stepwise regressions for maintenance adjusted feed conversion (ADJFC) and unadjusted feed conversion (UNADFC) over the first 140 d of the test, and total feed conversion (FC) until progeny reached 8.89 mm of back fat were obtained separately by conversion groups and sexes and for combined feed conversion groups and sexes. In general, weights were more important than linear body measurements in prediction of feed utilization. To some extent this was expected as weight is related directly to gain which is a component of feed conversion. Weight at 112 d was the most important variable in prediction of feed conversion when data from both feed conversion groups and sexes were combined. Weights at 84 and 140 d were important variables in prediction of UNADFC and FC, respectively, of bulls. ONTSTWT and weight at 140 d had the highest standardized partial regression coefficients for UNADFC and ADJFC, respectively, of heifers. Results indicated that linear measurements, such as MC, HDL and HOPIN, are useful in prediction of feed conversion when feed in takes are unavailable.

• Asian-Australasian Journal of Animal Sciences
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• 제7권3호
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• pp.435-440
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• 1994

Postweaning performance data were obtained on 401 group fed purebred Angus calves from 24 selected sires (12 high and 12 low feed conversion sires) from 1983 through 1986 at the Northwestern Branch of the Ohio Agricultural Research and Development Center. The objective of this study was to determine the interrelationships between body measurements and 140-d feed conversion (feed/gain) adjusted for maintenance (ADJFC), 140-d feed conversion unadjusted for maintenance (UNADFC) and feed conversion measured until progeny reached 8.89 mm of backfat (FC). Variables measured at the completion of the 140-d postweaning period included hip peight (HH), chest depth (CD), chest width (CW), head width (HDW), head length (HDL), heart girth (HG), muzzle circumference (MC), backfat thickness (BF), length between hooks aod pins (HOPIN) and length between shoulder and hooks (SHHO). Measurements were taken from progeny born from 1983 through 1986 for HH and BF, while others, except chest measurements (CD and CW), which were available only in 1985, were taken from progeny born in 1985 and 1986. Negative phenotypic correlations were found for UNADFC, ADJFC and FC. respectively, with HG (-0.76, -0.65 and -0.85), HOPIN (-0.05, -0.28 and -0.09), HDL (-0.63, -0.66 and -0.57), MC (-0.12, -0.35 and - 0.25), HH (-0.38, -0.29 and -0.001), BF(-0.29, -0.31 and -0.12) and CW (-0.03, -0.35 and -0.58). In general, fatter animals with larger HG, longer HDL and greater MC had better feed conversion.

• Asian-Australasian Journal of Animal Sciences
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• 제14권11호
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• pp.1592-1597
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• 2001

Sixteen pigs from 2 distinct genetic lines (LGAH and VFIL) obtained after eight generations of divergent selection for high (H) and low (L) lean tissue growth rate with ad-libitum feeding (LGA) and voluntary feed intake (VF1), respectively, were used in this study. The objectives of this investigation were to establish appropriate working conditions for the postheparin plasma lipoprotein lipase (LPL) assay and to study relationships between fat deposition and plasma lipids, very low density lipoprotein (VLDL) lipids, VLDL-subfractions and postheparin plasma LPL activity in growing pigs. Four preliminary experiments were performed to determine the appropriate working conditions for the postheparin plasma LPL assays. Postheparin plasma preincubated with SDS (20-50 mM) at $26^{\circ}C$ for 45 minutes inhibited hepatic lipase activity. A total of $2{\mu}l$ VLDL/assay produced maximum stimulation of LPL activity. Postheparin plasma protein and increasing incubation time contributed an optimum response. LGAH pigs had a significantly higher proportion subtraction 2 than VFIL pigs. No differences were observed in postheparin plasma LPL activity and backfat thickness for two lines of pigs. There were positive correlations between backfat thickness and proportion of subtractions 2 and postheparin plasma LPL activity but the results were not statistically significant. Backfat thickness was not statistically correlated with proportion of subtraction 2 and postheparin plasma LPL activity in a multiple regression analysis. It is believed that the apolipoprotein E, which is present in higher quantities in VLDL-subfraction 2 plays an important role for clearing VLDL triacylglycerol into adipose tissue. LPL activity of pigs can be measured by using postheparin plasma technique. If the relationships of backfat thickness and VLDL-subfraction 2 and postheparin plasma LPL activity can be established, it suggests that these parameters could be used as indicators in selection programmes. Further experiments need to be conducted by using larger sample size and different breed of pigs with greater differences in backfat thicknesses to confirm these trends.

• Ocean and Polar Research
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• 제24권3호
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• pp.179-187
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• 2002

The Ayu Trough, located in the southern end of the Philippine Sea, represents a divergent boundary between the Philippine Sea and the Caroline Plates. A detailed geophysical survey was carried out in the Ayu Trough by R/V Onnuri. Topographically, the Ayu Trough resembles an slow spreading ridge. The trough can be divided into three sections: the south $(0^{\circ}-1^{\circ}30'N),\;middle\;(1^{\circ}30'-4^{\circ}N)$, and north $(4^{\circ}-6^{\circ}30'N)$. The seafloor in the middle section is characterized by features asymmetric with respect to the axis. These features were probably produced by NW-SE and NNW-SSE extensions and seem to support the argument that the opening of the Ayu Trough occurred in an oblique fashion. Farther south, a long transform fault but with a short offset defines the boundary between middle and southern sections. The axial depth increases a stepwise to the south of $1^{\circ}30'N$. A clear difference can be seen between the southern and middle sections with the latter exhibiting much higher mantle Bouguer anomaly values in the axial region. The anomaly indicates that the axial crust perhaps experienced a much higher degree of extension in the middle than in the southern section. The analyses of magnetic field data reveal that the region beyond 100km exhibits considerable variations, whereas the magnetic anomalies within 100km from the trough axis are very much subdued. This observation suggests that the opening of the Ayu Trough involved an initial stage of rifting of existing volcanic arcs, followed by production of new seafloor.

• 한국추진공학회:학술대회논문집
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• 한국추진공학회 2004년도 제22회 춘계학술대회논문집
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• pp.262-270
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• 2004

Basic experiments were carried out using the THT-IV low-power Hall thruster to examine the influences of magnetic field shape and strength, and acceleration channel length on thruster performance and to establish guidelines for design of high-performance Hall thrusters. Thrusts were measured with varying magnetic field and channel structure. Exhaust plasma diagnostic measurement was also made to evaluate plume divergent angles and voltage utilization efficiencies. Ion current spatial profiles were measured with a Faraday cup, and ion energy distribution functions were estimated from data with a retarding potential analyzer. The thruster was stably operated with a highest performance under an optimum acceleration channel length of 20 mm and an optimum magnetic field with a maximum strength of about 150 Gauss near the channel exit and with some shape considering ion acceleration directions. Accordingly, an optimum magnetic field and channel structure is considered to exist under an operational condition, related to inner physical phenomena of plasma production, ion acceleration and exhaust plasma feature. A new Hall thruster was designed with basic research data of the THT-IV thruster. With the thruster with many considerations, long stable operations were achieved. In all experiments at 200-400 V with 1.5-3 mg/s, the thrust and the specific impulse ranged from 15 to 70 mN and from 1100 to 2300 see, respectively, in a low electric power range of 300~1300 W. The thrust efficiency reached 55 %. Hence, a large map of the thruster performance was successfully made. The thermal characteristics were also examined with data of both measured and calculated temperatures in the thruster body. Thermally safe conditions were achieved with all input powers.

• Journal of Microbiology and Biotechnology
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• 제18권5호
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• pp.837-844
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• 2008

Glucose (xylose) isomerases from Streptomyces sp. have been used for the production of high fructose corn syrup for industrial purposes. An 11-kb DNA fragment containing the xyl gene cluster was isolated from Streptomyces lividans TK24 and its nucleotide sequences were analyzed. It was found that the xyl gene cluster contained a putative transcriptional repressor (xylR), xylulokinase (xylB), and xylose isomerase (xylA) genes. The transcriptional directions of the xylB and xylA genes were divergent, which is consistent to those found in other streptomycetes. A gene encoding XylR was located downstream of the xylB gene in the same direction, and its mutant strain produced xylose isomerase regardless of xylose in the media. The enzyme expression level in the mutant was 4.6 times higher than that in the parent strain under xylose-induced condition. Even in the absence of xylose, the mutant strain produce over 60% of enzyme compared with the xylose-induced condition. Gel mobility shift assay showed that XylR was able to bind to the putative xyl promoter, and its binding was inhibited by the addition of xylose in vitro. This result suggested that XylR acts as a repressor in the S. lividans xylose operon.

• 원예과학기술지
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• 제29권1호
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• pp.53-60
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• 2011

Cytoplasmic male sterility (CMS) induced by mutant mitochondria genome, has been used for commercial seed production of $F_1$ hybrid cultivars in diverse crops. In pepper (Capsicum annuum L.), two sterile cytoplasm specific gene organization, atp6-2 and coxII were identified. An open reading frame, orf456 nearby coxII gene has been speculated to induce male sterility (MS) by mutagenic analysis. Moreover, molecular markers for atp6-2 and coxII of mitochondrial genotype (mitotype) were developed. However, the Cytoplasmic MS specific markers, atp6SCAR and coxIISCAR markers appeared in both N and S cytoplasms when polymerase chain reaction (PCR) cycles prolonged more than 40 cycles. Since the reported molecular markers were dominant markers, the presence of the faint sterile-specific band in normal cytoplasm may lead to the mis-classification of pepper breeding lines. To solve this problem, one common forward primer and two different reverse primers specific to normal coxII and sterile orf456 genes were designed after analyzing their gene organizations. By using these three primers, N and S coxII specific bands were co-amplified in male-sterile lines, but only normal coxII specific band was amplified in maintainer lines. Since the reverse primer for sterile coxII was specifically designed 275 bp downstream of orf456, relatively stable PCR amplification patterns were observed regardless of the number of PCR cycles. These primer sets easily identified different mitotypes among the divergent breeding lines, commercial cultivars and diverse germplasms.