• Title/Summary/Keyword: dissociation

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Dissociation Equilibrium of Dimeric Association of 3,3-Diethyl-9-Methyl-Thiacarbocyanine Dye (3,3’-Diethyl-9-Methyl-Thiacarbocyanine 색소 2 분자 회합체의 해리평형)

  • 김성훈;김재홍;송경헌;임용진
    • Textile Coloration and Finishing
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    • v.5 no.3
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    • pp.216-220
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    • 1993
  • Dissociation constants and heat of dissociation of dimers of 3, 3'-diethyl-thiacarbocyanine dye(Dye 2) have been studied. At $10~40^{\circ}C$, absorption spectra of 2 vol% aqueous ethanol solutions of Dye 2 showed monomer and dimer bands. From the temperature dependence of monomer absorbance, dissociation constants K and ${\Delta}H$ were estimated to be $6.2(10^{\circ}C)-10.6(40^{\circ}C)mon/\ell$ and 3kcal/mol, respectively. These K valus are about one half of those for 3,3'-diethyl-2,2'-cyanine dye with one methine carbon, indication a higher dimer stability than that of 3,3-diethyl-2,2'-cyanine dye.

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An anomalous dissociation of protonated cluster ions of DNA guanine-cytosine base-pair

  • Seong, Yeon-Mi;Han, Sang-Yun;Jo, Sung-Chan;Oh, Han-Bin
    • Mass Spectrometry Letters
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    • v.2 no.3
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    • pp.73-75
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    • 2011
  • In the collisionally-activated dissociation of the proton-bound cluster ions of DNA base guanine (G) and cytosine (C), $G{\bullet}{\bullet}H^+{\bullet}{\bullet}C$, the abundance of [$CH^+$] ions was found to be higher than that of [$GH^+$] despite the fact that G has a higher proton affinity than C. This unexpected observation seems to demonstrate another example that the simple kinetic method scheme does not work. We suggest that a kinetic factor or detailed dynamics governing the proton transfer and dissociation should be carefully considered in the applications of the kinetic method to the proton affinity measurements.

Dissociation of Thymine by Low-Energy Electrons

  • Cho, Hyuck;Noh, Hyung-Ah
    • Journal of Radiation Protection and Research
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    • v.45 no.1
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    • pp.11-15
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    • 2020
  • Background: There have been various studies to investigate the mechanisms of DNA damage from low-energy electrons. To understand the mechanism of these strand breaks, it is necessary to investigate the dissociation mechanism of the DNA constituents, that is, bases, sugars, and phosphates. Materials and Methods: We studied the dissociation of thymine base upon interaction with low-energy electrons. For this experiment, thymine powder was pressed onto the indium base and irradiated by 5 eV electrons. Results and Discussion: Non-irradiated and irradiated thymine samples were compared and analyzed using the X-ray photoelectron spectroscopic technique to analyze the dissociation patterns of the molecular bonds after low-energy electron irradiation of thymine. Conclusion: With 5 eV electron irradiation, C-C and N-C = O bonds are the primary dissociations that occur in thymine molecules.

The Dissociation Constants of Valines in Aqueous Solution (수용액 중에서 발린류의 해리상수)

  • Jung-Ui Hwang;Yong-Woo Kwak;Jae-Won Jung;Chon-Ho Kil
    • Journal of the Korean Chemical Society
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    • v.35 no.2
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    • pp.105-110
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    • 1991
  • The dissociation constants of valine and norvaline in aqueous solution were measured by conductometric method in various temperatures and pressures. The properties of the dissociation reaction were discussed in term of the thermodynamic properties of reaction. These substituted effects on the dissociation reaction were discussed on the points of Hammett relation and net charge of the O and N-atom calculated from CNDO/2 method respectively.

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Reconsideration of CN Radiation an d $C_2$ Dissociation Rate Coefficient ($C_2$의 해리 반응 계수와 CN 복사에 대한 재고찰)

  • Hyun, Seong-Yoon;Park, Chul;Chang, Keun-Shik
    • 한국전산유체공학회:학술대회논문집
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    • 2008.03b
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    • pp.92-95
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    • 2008
  • We performed the theoretical calculation of CN Violet radiation using the code SPRADIAN07 to predict the Lee et al.'s experimental measurements and to reinvestigate $C_2$ dissociation rate. CN Violet radiations are calculated under the Boltzmann and non-Boltzmann distribution using two chemical reaction sets: Park-Losev-G\"{o}kcen-Tsang and Park-Losev-G\"{o}kcen-Tsang-Lee models. Our SPRADIAN07 calculations show improvement in prediction of absolute radiation intensity of CN Violet and its decay rate by Park-Losev-G\"{o}kcen-Tsang reaction set with $C_2$ dissociation rate coefficient of $k_f$ = 1.5${\times}$10$^{16}$ exp(-71,600/$T_x$) cm$^3$ mole$^{-1}$ s$^{-1}$.

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Dissociation Curves of diatomic molecules and anions: A DC-DFT Study (밀도교정 밀도범함수를 이용한 이원자분자의 해리곡선 연구)

  • Go, Dong-Hyeok;Park, Han-Sol;Kim, Min-Cheol;Sim, Eun-Ji
    • Proceeding of EDISON Challenge
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    • 2014.03a
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    • pp.115-125
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    • 2014
  • We investigate dissociation of diatomic molecules and anions using density functional theory (DFT) and density-corrected density functional theory (DC-DFT). We scan the potential energy curve of CH, NH and NO neutral molecule and its anion with both DFT and DC-DFT (in form of Hartree-Fock DFT, HF-DFT) using various functionals. Using CCSD(T) results as reference, we perform the error decomposition scheme recently proposed by Kim et al. The results show while most neutrals are $functio{\acute{n}}al$ error $domi{\bar{n}}ating$ normal calculations, $CH^-$ and $NO^-$ anions are density-driven error dominating abnormal calculations. In case of $NH^-$, traditional DFT goes to a wrong dissociation limit indicating abnormality, but both HF-DFT and CCSD(T) results need further investigation due to the kinks on the curve.

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Regulation of c-fos promoter through interaction between dopamine D3 receptor and RGL, ral GDP dissociation stimulator-like

  • Park, Ju-Ran;Kim, So-Young;Kim, Kyeong-Man
    • Proceedings of the PSK Conference
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    • 2003.10b
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    • pp.89.2-89.2
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    • 2003
  • Ral GDP dissociation stimulator (Ral GDS) has been found to be an effector protein of Ras, and Ral, a member of small GTP-binding protein (G protein) superfamily, has been suggested to act downstream of Ras. Ral GDP dissociation stimulator-like (RGL) shares 50% amino acid identity with Ral GDP dissociation stimulator, and assumed to possess similar functional role. Using yeast two-hybrid screening, we found that dopamine D3 receptor interacts with RGL. Since RGL is known to regulate the expression of c-fos promoter, effects of D3R on gene expression of c-fos promoter was studied. (omitted)

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Collision-induced Energy Transfer and Bond Dissociation in Toluene by H2/D2

  • Ree, Jongbaik;Kim, Yoo Hang;Shin, Hyung Kyu
    • Bulletin of the Korean Chemical Society
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    • v.34 no.12
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    • pp.3641-3648
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    • 2013
  • Energy transfer and bond dissociation of $C-H_{methyl}$ and $C-H_{ring}$ in excited toluene in the collision with $H_2$ and $D_2$ have been studied by use of classical trajectory procedures at 300 K. Energy lost by the vibrationally excited toluene to the ground-state $H_2/D_2$ is not large, but the amount increases with increasing vibrational excitation from 5000 and $40,000cm^{-1}$. The principal energy transfer pathway is vibration to translation (V-T) in both systems. The vibration to vibration (V-V) step is important in toluene + $D_2$, but plays a minor role in toluene + $H_2$. When the incident molecule is also vibrationally excited, toluene loses energy to $D_2$, whereas it gains energy from $H_2$ instead. The overall extent of energy loss is greater in toluene + $D_2$ than that in toluene + $H_2$. The different efficiency of the energy transfer pathways in two collisions is mainly due to the near-resonant condition between $D_2$ and C-H vibrations. Collision-induced dissociation of $C-H_{methyl}$ and $C-H_{ring}$ bonds occurs when highly excited toluene ($55,000-70,400cm^{-1}$) interacts with the ground-state $H_2/D_2$. Dissociation probabilities are low ($10^{-5}{\sim}10^{-2}$) but increase exponentially with rising vibrational excitation. Intramolecular energy flow between the excited C-H bonds occurring on a subpicosecond timescale is responsible for the bond dissociation.

Density Functional Theory (DFT) Study of Gas-phase O.C Bond Dissociation Energy of Models for o-TEMPO-Bz-C(O)-Peptide: A Model Study for Free Radical Initiated Peptide Sequencing

  • Kwon, Gyemin;Kwon, Hyuksu;Lee, Jihye;Han, Sang Yun;Moon, Bongjin;Oh, Han Bin;Sung, Bong June
    • Bulletin of the Korean Chemical Society
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    • v.35 no.3
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    • pp.770-774
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    • 2014
  • The bond dissociation energy (BDE) of the chemical bond between the carbon and oxygen atoms of a simple TEMPO-derivative is calculated by employing the density functional theory, the $2^{nd}$ order M${\phi}$ller-Plesset (MP2) perturbation theory, and complete basis set (CBS) methods. We find that BDE of the positive ion of the TEMPO-derivative is larger at least by 7 kcal/mol than that of the negative ion, which implies that the dissociation reaction rate of the positive ion should be slower than that of the negative ion. Such theoretical predictions are contrary to the results of our previous experiments (Anal. Chem. 2013, 85, 7044), in which the larger energy was required for negative o-TEMPO-Bz-C(O)-peptides to undergo the dissociation reactions than for the positive ones. By comparing our theoretical results to those of the experiments, we conclude that the dissociation reaction of o-TEMPO-Bz-C(O)-peptide should occur in a complicated fashion with a charge, either positive or negative, probably being located on the amino acid residues of the peptide.