• Korean Journal of Ichthyology
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• v.34 no.4
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• pp.225-230
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• 2022

The single postlarval specimen (7.53 mm in standard length) of Thalassoma quinquevittatum (Lay & Bennett, 1839), belongs to the family Labridae, was collected by a bongo net from the southern coastal waters of Jeju-do Island, Korea in November 2020. T. quinquevittatum has a deeply curved dorsal contour before the dorsal fin, the oval eyes, and no melanophores throughout the body. While T. amblycephalum has a slightly curved dorsal contour before the center of the dorsal fin, the circular eyes, and few melanophores on the body. A molecular analysis based on 548 base pairs sequences in the mitochondrial DNA cytochrome c oxidase subunit I region shows that the specimen was closely matched to adult T. quinquevittatum (K2P distance=0.002-0.005). We report the first record of T. quinquevittatum in Korean waters, and suggest its new Korean name "Da-seot-jul-saek-dong-nol-rae-gi".

• Korean Journal of Ichthyology
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• v.35 no.1
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• pp.57-63
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• 2023

Four individuals of Lipolagus ochotensis larvae (13.4~21.3 mm SL), belong to the family Bathylagidae, were collected by a Bongo net from the southern waters off Jejudo Island, Korea in February to March 2018. L. ochotensis is characterized by a elongated and compressed body, the eye stalks, series of melanophores on posterior of body, dorsal fin origin above the middle of the body. A molecular analysis based on 625 base pairs sequences in the mitochondrial DNA cytochrome c oxidase subunit I region shows that specimens were closely matched to adult L. ochotensis (genetic distance=0.024). We report the first record of family Bathylagidae, genus Lipolagus, L. ochotensis in Korean waters, and suggest their new Korean names, "Sim-hae-bing-eo-gwa", "Geom-eun-bing-eo-sok", and "Geom-eun-bbyam-bing-eo", respectively.

• Korean Journal of Ichthyology
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• v.35 no.4
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• pp.244-252
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• 2023

This study compared the morphological and molecular characteristics of the two Pampus spp. in Korea, Japan and China to clarify the long-confused taxonomic status of the two Korean pomfrets named as "Byeong-eo" and "Deok-dae". Among them "Byeong-eo" was identified as Pampus punctatissimus in having the following morphological traits: patch of wavy ridges extending beyond the anterior tip of the pectoral fin, the groove on the lower ridge of gill cover absent, and the number of vertebrae 34. On the other hand, "Deok-dae" was identified as Pampus argenteus in having the following morphological traits: patch of wavy ridges not reaching to the anterior tip of the pectoral fin, the groove on the lower ridge of gill cover reaching to the lower jaw, and the number of vertebrae 38~42. In addition, "Byeong-eo" almost corresponded to P. punctatissimus from Japan in the mitochondrial DNA cytochrome c oxidase subunit I sequences (genetic distance=0.1%), while "Deokdae" showed genetic distance of 0.3% when compared to P. argenteus from China. Our comprehensive results suggest the validify of P. punctatissimus for "Byeong-eo", and P. argenteus for "Deok-dae".

• Journal of Environmental Science International
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• v.33 no.1
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• pp.87-95
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• 2024

The giant jellyfish, Nemopilema nomurai, is an endemic species found in Northeast Asian waters and their population structures, such as size and genetics, and their environmental characteristics were investigated. N. nomurai was obtained from the Yellow and Northern East China Seas during the summers of 2006, 2007, and 2009. In the northern Yellow Sea, small-sized jellyfish were found to be dominant and towards the southern seas, the size of the jellyfish increased. In the northern East China Sea, only one mode of jellyfish was found in May, and the number of modes increased up-to five in July. However, at the center of the Yellow Sea, one or two modes were found in July, 2007. Thus, different jellyfish populations were present in the northern East China Sea and the Yellow Sea. However, based on first appearance and a cohort analysis using the bell diameter, the jellyfish population in the northern Yellow Sea might be recognized as a distinct group that differed from those found in the northern East China Sea. Furthermore, mitochondrial DNA sequences (cytochrome c oxidase subunit I) of N. nomurai were, determined and compared with genetic structures obtained from jellyfish in the Yellow Sea. The genetic diversity of N. nomurai was highest in the regions around the northern East China Sea and at the center of the Yellow Sea and was the lowest around the northern Yellow Sea. Thus, N. nomurai populations in the Yellow Sea and northern East China Sea might be different concerning their seeding places.

• Korean Journal of Ichthyology
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• v.36 no.1
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• pp.101-106
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• 2024

In May 2020, a single larval specimen (5.14 mm in total length) was collected from the southeastern sea of Jeju Island of Korea using bongo net. The specimen was identified as Lepidotrigla longifaciata based on mitochondrial DNA cytochrome c oxidase subunit I sequences. The morphological traits of the L. longifaciata larva are as follows: a long snout, a large mouth, large fan-shaped pectoral fins, and black melanophores scattered on the abdominal cavity and nape. We propose the new Korean name 'Gin-meo-ri-dal-jae' for this species, which was first discovered in Korea.

• Korean Journal of Ichthyology
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• v.36 no.2
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• pp.188-192
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• 2024

This is the first report of Apogon erythrinus (Perciformes: Apogonidae) from Korea. A single specimen (33.6 mm SL) was collected by a fish pot from the coastal waters of Jeju-do Island on 28 October 2009. This species is characterized by having 5~6 predorsal scales, 7~9 developed gill rackers, end of second dorsal fin spine not reaching the middle of second dorsal fin base when depressed, and posterior margin of body scales reddish-brown. To confirm the correctness of species identification, the DNA cytochrome c oxidase subunit I sequence was obtained from the sample and compared with those of cardinalfish species recorded in the NCBI database. As a result, it was well-matched to A. erythrinus. We newly added this species to the Korean fish fauna and proposed a new Korean name, "Kueun-nun-eol-ge-bi-neul" because the eyes are large compared to its body.

• Korean Journal of Ichthyology
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• v.36 no.2
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• pp.193-198
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• 2024

Two specimens of Ostorhinchus fleurieu (54.25 mm, 55.64 mm SL) were collected by angling for the first time from Seogwipo-si, Jejudo Island, Korea on September and November 2023. This species is readily distinguished from the congeneric species, O. aureus by the number of total gill rakers (19~23 in O. fleurieu vs 22~27 in O. aureus) and shape of dark stripe on caudal peduncle (poorly defined, barrel shaped in O. fleurieu vs. well-defined, hourglass shaped in O. aureus). A total of 560 base pairs of mitochondrial DNA cytochrome c oxidase subunit I region of our two apogonid individuals perfectly matched with those of O. fleurieu (MT076481) registered in NCBI. Here, we propose the new Korean name "Kkoch-dong-gal-dom" for the species O. fleurieu.

• Fisheries and Aquatic Sciences
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• v.26 no.12
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• pp.752-761
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• 2023

Genetic diversity serves as the basis for selecting and genetically enhancing any culturable species in aquaculture. Here, two different strains of wild (River Ravi and River Kabul) and six captive-bred strains of Labeo rohita from various provinces were se- lected, and genetic diversity among them was evaluated using three different microsatellite markers, i.e., Lr-28, Lr-29, and Lr-37, and one mitochondrial CO1 (Cytochrome c oxidase subunit 1) gene. Different strains of L. rohita were collected, and part of their caudal fin was cut and preserved in ethanol for DNA extraction and determination of genetic diversity among them. Results in- dicated that selected markers were polymorphic with polymorphic information content (PIC) content values above 0.5 with the highest in Lr-28 followed by Lr-29 and then Lr-37. The observed heterozygosity (Ho) of all strains was higher (Avg: 0.731) but less than the expected heterozygosity (He). Moreover, TMs and WRs showed the highest He, while TKs showed the lowest, He. Over- all, inbreeding coefficient (FIS) values observed for all strains with selected markers were positive. The DNA barcoding with the CO1 gene revealed genetic variation among various strains, as demonstrated by the clades in the phylogenetic tree separating the strains into two distinct clusters that then divided into sub-clusters. In conclusion, TMs showed the highest heterozygosity as compared to other strains. Overall results provide the baseline data for the initiation of the genetic improvement program.

• The Korean Journal of Mycology
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• v.51 no.3
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• pp.179-190
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• 2023

Grapevine downy mildew, caused by Plasmopara viticola, significantly damages vineyards and is one of the most devastating diseases affecting cultivated grapes worldwide. In this study, we characterized the phenotypic and molecular traits of 11 P. viticola isolates from four grape-growing regions in South Korea. Additionally, we investigated the diversity of pathogenicity among these isolates and conducted an assay to evaluate the response of grape cultivars to P. viticola infection. Lemon-shaped sporangia were identified in the collected isolates, which released zoospores into the suspension at room temperature. Within a few hours of inoculation, the zoospores developed germ tubes. We tested 11 P. viticola isolates for pathogenicity in 845 grape cultivars to screen for grape host resistance to downy mildew infection. Among the tested isolates, JN-9 showed the highest virulence. Grape cultivars displayed varying phenotypic reactions to P. viticola infection: approximately 7% were highly susceptible, 41% were susceptible, 20% were moderately susceptible, 8% were resistant, and 24% exhibited extreme resistance. Phylogenetic analysis based on four genomic regions (internal transcribed spacer 1 [ITS1], actin, beta-tubulin, and cytochrome c oxidase II) revealed a close evolutionary relationship among all the Korean isolates, forming a single monophyletic lineage. Notably, these isolates showed greater similarity to European isolates than to American isolates. This comprehensive study contributes to a deeper understanding of the identity and behavior of P. viticola, which is crucial for developing effective resistance strategies against this pathogen in grape cultivars cultivated in South Korea.

• The Plant Pathology Journal
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• v.40 no.2
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• pp.171-191
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• 2024

Identification of Helicotylenchus species is very challenging due to phenotypic plasticity and existence of cryptic species complexes. Recently, the use of rDNA barcodes has proven to be useful for identification of Helicotylenchus. Molecular markers are a quick diagnostic tool and are crucial for discriminating related species and resolving cryptic species complexes within this speciose genus. However, DNA barcoding is not an error-free approach. The public databases appear to be marred by incorrect sequences, arising from sequencing errors, mislabeling, and misidentifications. Herein, we provide a comprehensive analysis of the newly obtained, and published DNA sequences of Helicotylenchus, revealing the potential faults in the available DNA barcodes. A total of 97 sequences (25 nearly full-length 18S-rRNA, 12 partial 28S-rRNA, 16 partial internal transcribed spacer [ITS]-rRNA, and 44 partial cytochrome c oxidase subunit I [COI] gene sequences) were newly obtained in the present study. Phylogenetic relationships between species are given as inferred from the analyses of 103 sequences of 18S-rRNA, 469 sequences of 28S-rRNA, 183 sequences of ITS-rRNA, and 63 sequences of COI. Remarks on suggested corrections of published accessions in GenBank database are given. Additionally, COI gene sequences of H. dihystera, H. asiaticus and the contentious H. microlobus are provided herein for the first time. Similar to rDNA gene analyses, the COI sequences support the genetic distinctness and validity of H. microlobus. DNA barcodes from type material are needed for resolving the taxonomic status of the unresolved taxonomic groups within the genus.