• Title/Summary/Keyword: complex region

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Identification of a Copy Number Variation on Chromosome 20q13.12 Associated with Osteoporotic Fractures in the Korean Population

  • Park, Tae-Joon;Hwang, Mi Yeong;Moon, Sanghoon;Hwang, Joo-Yeon;Go, Min Jin;Kim, Bong-Jo
    • Genomics & Informatics
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    • v.14 no.4
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    • pp.216-221
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    • 2016
  • Osteoporotic fractures (OFs) are critical hard outcomes of osteoporosis and are characterized by decreased bone strength induced by low bone density and microarchitectural deterioration in bone tissue. Most OFs cause acute pain, hospitalization, immobilization, and slow recovery in patients and are associated with increased mortality. A variety of genetic studies have suggested associations of genetic variants with the risk of OF. Genome-wide association studies have reported various single-nucleotide polymorphisms and copy number variations (CNVs) in European and Asian populations. To identify CNV regions associated with OF risk, we conducted a genome-wide CNV study in a Korean population. We performed logistic regression analyses in 1,537 Korean subjects (299 OF cases and 1,238 healthy controls) and identified a total of 8 CNV regions significantly associated with OF (p < 0.05). Then, one CNV region located on chromosome 20q13.12 was selected for experimental validation. The selected CNV region was experimentally validated by quantitative polymerase chain reaction. The CNV region of chromosome 20q13.12 is positioned upstream of a family of long non-coding RNAs, LINC01260. Our findings could provide new information on the genetic factors associated with the risk of OF.

Binding Modes of New Bis-Ru(II) Complexes to DNA: Effect of the Length of the Linker

  • Kwon, Byung-Hyang;Choi, Byung-Hoon;Lee, Hyun-Mee;Jang, Yoon-Jung;Lee, Jae-Cheol;Kim, Seog-K.
    • Bulletin of the Korean Chemical Society
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    • v.31 no.6
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    • pp.1615-1620
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    • 2010
  • Bis-[dipyrido[3,2-$\alpha$:2',3'-c]phenazine)$_2$(1,10-phenanthroline)$_2Ru_2$]$^{2+}$ complexes (bis-Ru(II) complexes) tethered by linkers of various lengths were synthesized and their binding properties to DNA investigated by normal absorption and linear dichroism spectra, and fluorescence techniques in this study. Upon binding to DNA, the bis-Ru(II) complex with the longest linker (1,3-bis-(4-pyridyl)-propane), exhibited a negative $LD^r$ signal whose intensity was as large as that in the DNA absorption region, followed by a complicate $LD^r$ signal in the metal-to-ligand charge transfer region. The luminescence intensity of this bis-Ru(II) complex was enhanced. The observed $LD^r$ and luminescence results resembled that of the [Ru(1,10-phenanthroline)$_2$ dipyrido[3,2-$\alpha$:2',3'-c]phenazine]$^{2+}$ complex, whose dipyrido[3,2-$\alpha$:2',3'-c]phenazine (dppz) ligand has been known to intercalate between DNA bases. Hence, it is conclusive that both dppz ligands of the bis-Ru(II) complex intercalate. The binding stoichiometry, however, was a single intercalated dppz per ~ 2.3 bases, which violates the "nearest binding site exclusion" model for intercalation. The length between the two Ru(II) complexes may be barely long enough to accommodate one DNA base between the two dppz ligands, but not for two DNA bases. When the linker was shorter (4,4'-bipyridine or 1,2-bis-(4-pyridyl)-ethane), the magnitude of the LD in the dppz absorption region, as well as the luminescence intensity of both bis-Ru(II) complexes, was half that of the bis-Ru(II) complex bearing a long linker. This observation can be elucidated by a model whereby one of the dppz ligands intercalates while the other is exposed to the aqueous environment.

A Study on The Groundwater Contamination Focused on VOCs in Chung-Nam Area (충청남도 지역의 VOCs를 중심으로 한 지하수오염 실태)

  • 이창균;장순웅;유지택;임봉수
    • Journal of the Korean Society of Groundwater Environment
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    • v.6 no.1
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    • pp.8-13
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    • 1999
  • This research was investigated to examine the status of goundwater contamination in Chung-Nam area over 2 years from 1996 May to 1998 May. The results show that the overall detection rates of VOCs (volatile organic compounds) by region were as followed: industrial region > agricultural & industrial complex region > gas station region > around industrial region > downtown region, and excess rates of those were as followed: industrial region > gas station region > agricultural & industrial region > around industrial region > downtown region. Benzene and TCE of VOCs examined in Chon-An industrial region exceeded drinking water standard. At the agricultural & industrial complex region, the observed mean concentration of TCE was 3.107 mg/L and TCE was also detected at 48.152 mg/L which is 100 times higher than drinking water standard, and other VOCs were also observed at higher concentrations as well. Based on our studies, It is concluded that appropriate remedial action should be performed to protect further groundwater contamination and to restore groundwater quality in Chung-Nam area.

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A Study of Relevant System for Developing Eco-friendly Maritime Resort - Focused on Geographical and Geological Characteristics of Golf Courses in Islands Region - (친환경 해양관광시설 조성을 위한 관련 제도에 대한 검토 - 도서지역 골프장입지의 지형, 지질 특수성을 중심으로 -)

  • Kim, Sehyun
    • Journal of Environmental Impact Assessment
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    • v.18 no.5
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    • pp.313-319
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    • 2009
  • A complex maritime resort combined marina and with course of Korea is required to improve international tourism competitiveness by taking advantage of her environmental favorable circumstances. The development of tourism, however, is focused on land-oriented that incurred lower tourism efficiency and international tourism competitiveness. In addition, the regulation of "Preliminary environmental assessment for golf courses" by the Ministry of Environment is emphasized on land geography and geology that can cause damage of tourist attractions in an island region. In particular, the development of 6th or 7th ridges in mountainous island region within 2km from the sea, that holds scenic and academic value, can go against environment-friendly by geographical and geological damage. According to the regulation for consultation for golf courses and forestry is to preserve regional ecosystem over 6th ridge, but it cannot be applicable to island region because that can form excessive slopes where marine ecosystem is required to be maintained. It, therefore, can be desirable that the development of over 6th ridge in an island region. It is suggested that continuous comparative studies of geographical and geological characteristics between land and island region will be carried on to establish feasible and reasonable development model so that balanced development of land and island, and versatile international environment-friendly maritime resort can be achieved and developed.

Function of mORF1 Protein as a Terminal Recognition Factor for the Linear Mitochondrial Plasmid pMLP1 from Pleurotus ostreatus

  • Kim, Eun-Kyoung;Roe, Jung-Hye
    • Journal of Microbiology
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    • v.37 no.4
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    • pp.229-233
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    • 1999
  • The mitochondrial plasmid pMLP1 from a white-rot fungus, Pleurotus ostreatus, is a double-stranded DNA containing 381 bp terminal inverted repeat (TIR) whose 5'-ends are covalently bound by terminal proteins. The plasmid contains two major open reading frames (ORFs), encoding putative DNA and RNA polymerases, and a minor ORF encoding a small, highly basic protein. To identify the DNA binding activity that recognizes the TIR region of pMLP1, gel retardation assays were performed with mitochondrial extracts. A specific protein binding to a region between 123 and 248 nt within TIR was observed. We examined whether the gene product of mORF1 bindes to this region specifically. E. coli cell extract which contains an overproduced mORF1 protein formed a complex specific to the region between 123 and 248 nt. Inclusion of mORF1 protein in the specific complex formed between P. ostreatus mitochondrial extract and TIR was confirmed by a supershift assay using polyclonal antibodies against the mORF1 protein. Our result suggest that the product of mORF1 may function as a terminal region recognition factor (TRF), recognizing an internal region in TIR.

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Atmospheric Studies Using a Three-Dimensional Eulerian Model in Kyongin Region (3차원 오일러리안 확산모델을 이용한 경인산단권역의 대기거동 해석)

  • Song, Dong-Woong
    • Journal of Environmental Science International
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    • v.15 no.5
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    • pp.387-396
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    • 2006
  • The numerical modeling and comparison with observations are performed to find out the detailed structure of meteorology and the characteristic of related dispersion phenomena of the non-reactive air pollutant at Kyoungin region, South Korea, where several industrial complex including Siwha, Banwol and Namdong is located. MM5 (Fifth Generation NCAR/Penn State Mesoscale Model), 3-D Land/sea breeze model and 3-D diagnostic meteorological model have been utilized for the meteorological simulation for September, 2002 with each different spatial resolution, while 3-D Eulerian air dispersion model for the air quality study. We can see the simulated wind field shows the very local circulation quitely well compared with in-site observations in shoreline area with complex terrains, at which the circulation of Land/sea breeze has developed and merged with the mountain and valley breeze eventually. Also it is shown in the result of the dispersion model that the diurnal variation and absolute value of daily mean $SO_2$ concentrations have good agreement with observations, even though the instant concentration of $SO_2$ simulated overestimates around 1.5 times rather than that of observation due to neglecting the deposition process and roughly estimated emission rate. This results may indicate that it is important for the air quality study at shoreline region with the complex terrain to implement the high resolution meteorological model which is able to handle with the complicate local circulation.

The Concentrations of Heavy Metals in Sediment Seawater and Oyster (Crassostrea gigas) in Coastal Region of Industrial Complex in Korea (한국 임해 공단 연안에서 퇴적물 해수 및 굴 (Crassostrea gigas)의 중금속 함량)

  • Lee, I.S.;B.j. Rho;J.I. Song;E.J. Kim
    • The Korean Journal of Ecology
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    • v.19 no.3
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    • pp.261-270
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    • 1996
  • To investigate the degree of contamination from Korean coastal region, the concentrations of Cu, Pb, Zn and Cd in sediments, seawater and oyster (Crassostrea gigas) at Masan Bay, Onsan Bay, Daesan industrial complex and their control areas were analysed. Values for sediments, seawater and oyster in the industrial complex coastal region were higher than those in the control area except for seawater in Daesan. The values for dissolved phasc of Cu, Pb, Zn and Cd in seawater showed 0.3~1.75 ${\mu}g/l$, 0.013~0.12 ${\mu}g/l$, 0.20~6.14 ${\mu}g/l$ and 0.007~0.021 ${\mu}g/l$, respectively. The concentrations of Cu, Pb, Zn and Cd in sediments werd 12.0~47.8 ${\mu}g/g$, 6.16~59.5 ${\mu}g/g$, 43.0~230 ${\mu}g/g$ and 0.52~11.2 ${\mu}g/g$, respectively. The concentrations of Cu, Pb, Zn and Cd in oyster showed 12.1~85.6 ${\mu}g/g$, 0.267~1.48 ${\mu}g/g$, 1, 070~3, 250 ${\mu}g/g$ and 3.23~7.71 ${\mu}g/g$, respectively. The contents of heavy metals in oysters at industrial complex coastal region showed that they were not seriously contaminated compared with those of Mussel Watch (1992).

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Impedance Spectroscopy of (Pb0.92La0.08)(Zr0.95Ti0.05)O3 Ceramics above Room Temperatures

  • Jong-Ho Park
    • Korean Journal of Materials Research
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    • v.34 no.5
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    • pp.242-246
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    • 2024
  • La modified lead zirconate titanate ceramics (Pb0.92La0.08)(Zr0.95Ti0.05)O3 = PLZT-8/95/5 were prepared using the conventional solid state reaction method in order to investigate the complex impedance characteristics of the PLZT-8/95/5 ceramic according to temperature. The complex impedance in the PLZT-8/95/5 ceramic was measured over a temperature range of 30~550 ℃ at several frequencies. The complex dielectric constant anomaly of the phase transition was observed near TU1 = 179 ℃ and TU2 = 230 ℃. A remarkable diffuse dielectric constant anomalous behaviour of the complex dielectric constant was found between 100 ℃ and 550 ℃. The complex impedance spectra below and above TU1 and TU2 were fitted by the superposition of two Cole-Cole types of impedance relaxations. The fast component in the higher frequency region may be due to ion migration in the bulk, and the slow component in the lower frequency region is interpreted to be the formation and migration of ions at the grain boundary or electrode/crystal interfacial polarization.

Numerical Simulation of Effects of Atmospheric Flow Fields Using SurFace Observational Data on Dispersion Fields of Air Pollutants in Gwangyang Bay (광양만권역에서의 자료동화된 대기 유동장이 대기 오염 물질의 확산장에 미치는 영향에 관한 수치모의)

  • Lee Hwa Woon;Won Hye Young;Choi Hyun-Jung;Kim Hyun Goo
    • Journal of Korean Society for Atmospheric Environment
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    • v.21 no.2
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    • pp.169-178
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    • 2005
  • A critical component of air pollution modeling is the representation of atmospheric flow fields within a model domain, since an accurate air quality simulation requires an accurate portrayal of the three-dimensional wind fields. The present study investigated data assimilation using surface observational data in the complex coastal regions to simulate a realistic atmospheric flow fields. Surface observational data were categorized into three groups (Near coastal region, Far coastal region 1, Far costal region 2) by the locations where the sites are. Experiments were designed according to the location of observational stations and MM5/CALPUFF was used. The results of numerical simulation of atmospheric flow fields are used as input data for CALPUFF which predicts dispersion fields of air pollutants. The result of this study indicated that data assimilation using data in the far coastal region 2 provided an attractive method for generating realistic meteorological fields and dispersion fields of air pollutants in Gwangyang area because data in the near coastal region are variable and narrow representation.

A STUDY ON CRANIOFACIAL GROWTH ANALYSIS OF KOREAN CHILDREN BY THE FINITE ELEMENT METHOD (한국아동의 악안면성장에 관한 유한요소법적 연구)

  • Tahk, Seon-Gun
    • The korean journal of orthodontics
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    • v.18 no.2
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    • pp.343-366
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    • 1988
  • Craniofacial complex is influenced by numerical skeletal elements. Though the analysis of growth change has been done by various analytical methods, it was dependent on any method of registration and superimposition, based on reference plane and reference point. However, the craniofacial growth is composed of a number of local growth elements. Therefore, it will be necessary to use a clinically useful method for estimating craniofacial skeletal growth independently. The author analysed longitudinal cephalometric roentgenogram of 15 Korean males and 15 Korean females aged from 6 to 12 years by the finite element method and results were as follows : 1. The finite element method for craniofacial skeletal complex and soft tissue made it possible to analyze the independent local growth. 2. Regression equations from the value of each strain will make it possible to predict the craniofacial growth. 3. The growth of anterior cranial base was different from that of other facial bone. 4. The growth of posterior cranial base influenced the growth of upper pharyngeal region, midfacial region, maxilla and posterior region of mandible. 5. The growth of maxillary complex was vertical rather than horizontal. 6. The growth direction of ramus, mandibular body, alveolar bone was various. 7. The relation between hard tissue and soft tissue by finite element method was variant.

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