• Journal of Dairy Science and Biotechnology
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• v.35 no.3
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• pp.152-161
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• 2017

Cheese is an excellent substrate for yeast and mold growth. These organisms can cause cheese spoilage, resulting in significant food wastage and economic losses. In the context of cheese spoilage, the presence and effects of spoilage or pathogenic bacteria are well documented. In contrast, although yeasts and molds are responsible for much dairy food wastage, only a few studies have examined the diversity of spoilage fungi. This article reviews the spoilage yeasts and molds affecting cheeses in various countries. The diversity and number of fungi present were found to depend on the type of cheese. Important fungi growing on cheese include Candida spp., Galactomyces spp., Debaryomyces spp., Yarrowia spp., Penicillium spp., Aspergillus spp., Cladosporium spp., Geotrichum spp., Mucor spp., and Trichoderma spp.. In addition, several mold spoilage species, such as Aspergillus spp. and Penicillium spp., are able to produce mycotoxins, which may also be toxic to humans. There are many ways to eliminate or reduce toxin levels in foods and feeds. However, the best way to avoid mycotoxins in cheese is to prevent mold contamination since there are limitations to mold degradation or detoxifications in cheese. Chemical preservatives, natural products, and modified atmosphere packaging have been used to prevent or delay mold spoilage and improve product shelf life and food safety.

• Asian-Australasian Journal of Animal Sciences
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• v.21 no.3
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• pp.331-339
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• 2008

The genetic structure and diversity of 15 Chinese indigenous chicken breeds was investigated using 29 microsatellite markers. The total number of birds examined was 542, on average 36 birds per breed. A total of 277 alleles (mean number 9.55 alleles per locus, ranging from 2 to 25) was observed. All populations showed high levels of heterozygosity with the lowest estimate of 0.440 for the Gushi chickens, and the highest one of 0.644 observed for Wannan Three-yellow chickens. The global heterozygote deficit across all populations (FIT) amounted to 0.180 (p<0.001). About 16% of the total genetic variability originated from differences between breeds, with all loci contributing significantly to this differentiation. An unrooted consensus tree was constructed using the Neighbour-Joining method and pair-wise distances based on marker estimated kinships. Two main groups were found. The heavy-body type populations grouped together in one cluster while the light-body type populations formed the second cluster. The STRUCTURE software was used to assess genetic clustering of these chicken breeds. Similar to the phylogenetic analysis, the heavy-body type and light-body type populations separated first. Clustering analysis provided an accurate representation of the current genetic relations among the breeds. Remarkably similar breed rankings were obtained with all methods.

• Korean Journal of Environmental Biology
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• v.34 no.4
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• pp.233-239
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• 2016

The purpose of this study is to investigate the response of the soil mesofauna and ground-dwelling arthropods to vegetation structure and composition in a mountain pasture. The pasture mainly comprised five types of plant communities; Agrostis alba - Phleum pratense community, Poa pratensis community, Festuca ovina community, Rumex acetosella community, and the shrub assemblage comprised Spiraea miyabei-Spiraea salicifolia community. Soil chemical properties including the pH, EC and nutrient levels were influenced by plant communities. Plant-specific responses were observed for bacteria-feeding and plant-feeding soil nematodes. Collembola and Oribatida having the same feeding habit were influenced differently by plants. nMDS showed that the community of ground-dwelling arthropods were separated by vegetation types. Species numbers of arthropods were different among different plant communities. Our results indicate that vegetation structure and composition can influence both abundance of diversity of terrestrial fauna.

• Ocean and Polar Research
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• v.31 no.1
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• pp.63-70
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• 2009

Eutrophicated water fed through Mankyeong River and Dongjin River into the new Saemankeum Lakemight seriously affect the water quality and phytoplankton community in the lake. To obtain control reference data for the later studies on environmental changes due to the construction of the Saemankeum Sea Wall, we performed a monthly investigation on the physico-chemical properties of the water and phytoplankton community at 3 stations in the Mankyeong River Estuary over 14 months starting from September 1999. Water temperature ranged from $0.3{\sim}32.9^{\circ}C$ due to the typical seasonal variations in temperate on the coasts and salinity exhibited a wide annual range of $0.2{\sim}33.7$ psu along with regular and huge hourly variations according to tidal cycles. Inorganic nutrients were supplied from rivers to the monitoring station and the whole lake. The average concentration of total-N, $6.99\;mg{\cdot}l^{-1}$, was higher than the water quality for agricultural use with peak values occurring in winter. Species composition showed a seasonal succession pattern, where a high diversity was observedin summer and autumn and vice versa in winter. Hourly variations of water properties in the "Mankyeong bridge" Station were quite regular and well in accordance with the daily tidal cycles. The different degree of sea water intrusion during the flood tide at each of the 3 stations exhibited a different range and variation pattern of water temperature and salinity throughout a day. Hourly changes in species composition were in harmony with the daily tidal cycles, resulting in extremely variable spatio-temporal variation.

• The Korean Journal of Mycology
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• v.22 no.4
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• pp.343-349
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• 1994

One hundred and two virulent(V) strains of Cryphonectria parasitica were isolated from the cankers of American chestnut (Castanea dentata) trees in western Massachusetts, USA. The diversity of vegetative compatibility groups (VCGs) of C. parasitica was investigated. One hundred and two strains represented 54 VCGs; 38 VCGs had only one strain each, 6 VCGs had 2 strains each, and 10 most common VCGs had 52 strains. Great diversity in VCGs may due to the increasing numbers of VCGs with time since the pathogen has been in Massachusetts for 80 years. Ten vegetative compatibility representative strains were selected from the 10 most common VCGs and converted to hypovirulent (H) strains through the pairing and hyphal anastomosis of H strains (4 strains with French dsRNA elements and 17 strains with Italian dsRNA elements). All of the 10 representative strains were converted to H strains by at least more than one of the H strains.

• Korean Journal of Ecology and Environment
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• v.34 no.2 s.94
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• pp.90-97
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• 2001

The seasonal changes in phytoplankton standing crops, species composition, dominant species, species diversity and physico-chemical characteristics in Woopo and Mokpo swamps were studied from January to December, 1998. Phytoplankton of a total 353 taxa were identified, the composition of phytoplankton community was characetrized by green algae and diatoms and quantity composition of standing crops was dominated by green alga Oscillatoria sp. was especially prominent. The standing crops varied from 108 cells/ml and 118 cells/ml to 19,178 cells and 38,393 cells/ml in Woopo and Mokpo swamps, respectively. The maximum algal density was observed in November, Micractinium pusillum and Oscillatoria sp. usually contributed 83.2% to total cell numbers in Woopo swamp. However, the maximum density occurred in May when Oscillatoria sp. formed bloom in Mokpo swamp. The low species diversity of the phytoplankton coincided with maximum standing crops of the filamentous blue-green alga Oscillatoria sp. and green alga Micractinium pusillum in May and November.

• Korean Journal of Ecology and Environment
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• v.45 no.2
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• pp.232-241
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• 2012

The seasonal changes in phytoplankton species composition, standing crops, dominant species, species diversity and physico-chemical characteristics in the Unmun dam were studied, from August, 2009 to April, 2010. The phytoplanktons of a total of 121 taxa were identified, the composition of phytoplankton community was characterized by a green algae and diatoms, and the quantity composition of standing crops was dominated by diatoms and dinophyceae. The diatoms Aulacoseria granulata and blue-green alga Anabaena planktonica in Summer, Peridinium voltzii in Autumn and Asterionella formosa in Winter to Spring were, especially, prominent. The seasonal changes of the biomass varied from 578 cells $mL^{-1}$ to 12,938 cells $mL^{-1}$, and the maximum algal density was observed in April, Asterionells formosa contributed to 88% of the total cell numbers. The species diversity and richness were highest during autumn, and dominance index was highest in the spring season.

• Korean Journal of Environment and Ecology
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• v.20 no.4
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• pp.374-390
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• 2006

The analysis of correlation between the 9 element (used as the classification standard of stream typology out of the 25 elements pertinent to the survey of hydromorphological structure) and both emerged benthic macroinvertebrate as well as vegetation indicated that the substrate diversity, curvature, and degree of development of the transverse bar had a high correlation with the species composition. Only COD concentration was found to have the statistically significant correlation with the distribution of benthos among the 12 aquatic and chemical elements. Specifically, the analysis of the biotic and abiotic factors in this study indicated that there was a statistically significant correlation between the sand river and cobble river in the positive(+) and negative(-) aspects, suggesting that there is a distinctive difference between the two types of rivers in terms of hydromorphologlcal structure and ecological characteristics. Therefore, the findings of this study imply that the consideration of a biotop is prerequisite for the evaluation of stream status regarding stream restoration or the ecological topology of streams.

• Journal of Korean Society on Water Environment
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• v.28 no.4
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• pp.561-573
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• 2012

The object of this study was to analyze long-term water quality gradients during 1992-2008 at six sites of Geumho River and near-by two sites of Nakdong River and their influences on fish trophic guilds and tolerance guilds along with ecological health. Water quality including biological oxygen demand (BOD), chemical oxygen demand (COD), conductivity, total phosphorus (TP), total nitrogen (TN), and total suspended solids (TSS) varied largely depending on the sampling locations and seasons. Values of ambient BOD, COD, TP, and TN were greater in the downstream than in the upstream reach, and seasonal and interannual variabilities were also higher in the downstreams. This phenomenon was evident due to a dilution by the Asian monsoon rainfall during the monsoon. These outcomes indicate that point sources near the downstream are important for the chemical conditions, but also seasonal stream runoff was considered as an important factor regulating the chemical conditions. Conductivity decreased rapidly during the summer due to ionic dilution, and nutrients (N, P), BOD, COD had an inverse function of seasonal precipitation. Based on the water quality, we selected two sites (control site = $C_s$ vs. impacted site = $I_s$) for impact analysis of water chemistry on fish community and trophic/tolerant guilds. Fish guild analysis showed that species diversity was higher in the headwater stream ($C_s$) than the impacted downstream ($I_s$), and that the proportion of tolerant and omnivore species were greater in the impacted site of downstream. Comparisons of water quality between Geumho River and Nakdong River indicated that Geumho River was considered as a point source which degradated water quality to the Nakdong River. Overall, chemical water quality and fish guild analysis suggest that even if current chemical quality got better after 1996 due to continuous constructions of wastewater disposal plants near the downstreams, fish compositions of tolerant and omnivores were still dominated the community. Thus, biological restoration based on ecological health is required for the ecosystem conservation.

• The Plant Pathology Journal
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• v.40 no.1
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• pp.73-82
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• 2024

Gardenia (Gardenia jasminoides) is a popular and economically vital plant known for its ornamental and medicinal properties. Despite its widespread cultivation, there has been no documentation of plant viruses on gardenia yet. In the present study, gardenia leaves exhibiting symptoms of plant viral diseases were sampled and sequenced by both metatranscriptome and small RNA sequencing. As a consequence, bean common mosaic virus (BCMV) was identified in gardenia for the first time and named BCMV-gardenia. The full genome sequence of BCMV-gardenia is 10,054 nucleotides (nt) in length (excluding the poly (A) at the 3' termini), encoding a large polyprotein of 3,222 amino acids. Sequence analysis showed that the N-termini of the polyprotein encoded by BCMV-gardenia is less conserved when compared to other BCMV isolates, whereas the C-termini is the most conserved. Maximum likelihood phylogenetic analysis showed that BCMVgardenia was clustered closely with other BCMV isolates identified outside the leguminous plants. Our results indicated that the majority of BCMV-gardenia virus-derived small interfering RNAs (vsiRNAs) were 21 nt and 22 nt, with 21 nt being more abundant. The first nucleotide at the 5' termini of vsiRNAs derived from BCMV-gardenia preferred U and A. The ratio of vsiRNAs derived from sense (51.1%) and antisense (48.9%) strands is approaching, and the distribution of vsiRNAs along the viral genome is generally even, with some hot spots forming in local regions. Our findings could provide new insights into the diversity, evolution, and host expansion of BCMV and contribute to the prevention and treatment of this virus.