• 대한중풍순환신경학회지
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• 제8권1호
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• pp.22-27
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• 2007

Objectives : This study was aimed to assess the distribution of metabolic syndrome according to Sasang constitution(SC) in acute stroke patients. Methods : We assessed the type of SC of acute stroke patients in the oriental medical hospitals of 3 universities located in metropolitan region from October 2005 to June 2007 by Ouestionnaire for the Sasang Constitution Classification II(QSCC II). Then, we investigated the general characteristics, the prevalence of each factor of the metabolic syndrome and the prevalence of the metabolic syndrome according to SC. Results : 338 subjects were included into the final analysis. 1. This study showed that the proportion of So-yang was highest of all constitutions(45.9%). 2. The prevalence of high TG, low HDL-chol, high BP, high FBS of Tae-um were higher than those of the other constitutions, but the differencecs were not statistically significant. The prevalence of high WC of Tae-um was significantly higher than other constitutions(p<0.001). 3. The prevalence of metabolic syndrome of Tae-um was significantly higher than other constitutions (p=0.002). Conclusion : There were significant differences in the prevalence of metabolic syndrome according to SC in acute stroke patients. For the further research, it seems to be necessary to construct fundamental databases for stroke by increasing the number of patients and by diagnosing SC more delicately.

• Animal Bioscience
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• 제36권10호
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• pp.1517-1529
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• 2023

Objective: The objective of this study was to investigate the phylogenetic and expression analysis of the angiopoietin-like (ANGPTL) gene family and their role in lipid metabolism in pigs. Methods: In this study, the amino acid sequence analysis, phylogenetic analysis, and chromosome adjacent gene analysis were performed to identify the ANGPTL gene family in pigs. According to the body weight data from 60 Jinhua pigs, different tissues of 6 pigs with average body weight were used to determine the expression profile of ANGPTL1-8. The ileum, subcutaneous fat, and liver of 8 pigs with distinct fatness were selected to analyze the gene expression of ANGPTL3, ANGPTL4, and ANGPTL8. Results: The sequence length of ANGPTLs in pigs was between 1,186 and 1,991 bp, and the pig ANGPTL family members shared common features with human homologous genes, including the high similarity of the amino acid sequence and chromosome flanking genes. Amino acid sequence analysis showed that ANGPTL1-7 had a highly conserved domain except for ANGPTL8. Phylogenetic analysis showed that each ANGPTL homologous gene shared a common origin. Quantitative reverse-transcription polymerase chain reaction analysis showed that ANGPTL family members had different expression patterns in different tissues. ANGPTL3 and ANGPTL8 were mainly expressed in the liver, while ANGPTL4 was expressed in many other tissues, such as the intestine and subcutaneous fat. The expression levels of ANGPTL3 in the liver and ANGPTL4 in the liver, intestine and subcutaneous fat of Jinhua pigs with low propensity for adipogenesis were significantly higher than those of high propensity for adipogenesis. Conclusion: These results increase our knowledge about the biological role of the ANGPTL family in this important economic species, it will also help to better understand the role of ANGPTL3, ANGPTL4, and ANGPTL8 in lipid metabolism of pigs, and provide innovative ideas for developing strategies to improve meat quality of pigs.

• 한국엔터테인먼트산업학회논문지
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• 제13권8호
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• pp.435-446
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• 2019

본 논문은 노인요양시설에서 생활하는 고령자를 대상으로 12주간 실시한 근력운동 프로그램(주 3회, 회당 60분)이 노인들의 건강관련 체력 및 대사증후군 요인에 미치는 영향을 살펴보기 위하여 실시되었다. 총 27명의 대상자(운동군 15명, 대조군 12명)가 참여하였으며 연구의 결과는 다음과 같다. 12주간의 근력운동 프로그램은 노인의 건강관련 체력요인을 유의하게 증가시켰으며, 특히 근력 및 평형성, 그리고 유연성의 증가가 보행능력을 크게 향상시켜 낙상을 예방하는데 도움이 될 수 있을 것으로 생각된다. 그리고 노인요양시설에서 근력운동이 노인들의 혈압과 혈당을 유의하게 감소시켜 대사증후군의 위험인자를 긍정적으로 개선시킴으로써 건강수준을 증가시키는 것으로 나타났다.

• Fisheries and Aquatic Sciences
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• 제26권9호
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• pp.558-568
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• 2023

Vibrio vulnificus is an aquatic bacterium causing septicemia and wound infection in humans. To understand this pathogen at the genomic level, it was performed whole genome sequencing of a cefoxitin-resistant strain, V. vulnificus 1908-10 possessing virulence-related genes (vvhA, viuB, and vcgC) isolated from Gadeok island coastal seawater in South Korea. The genome of V. vulnificus 1908-10 consisted of two circular contigs and no plasmid. The total genome size was estimated to be 5,018,425 bp with a guanine-cytosine (GC) content of 46.9%. We found 119 tRNA and 34 rRNA genes respectively in the genome, along with 4,352 predicted protein sequences. Virulence factor (VF) analysis further revealed that V. vulnificus 1908-10 possess various virulence genes in classes of adherence, antiphagocytosis, chemotaxis and motility, iron uptake, quorum sensing, secretion system, and toxin. In the comparison of the presence/absence of virulence genes, V. vulnificus 1908-10 had fur, hlyU, luxS, ompU, pilA, pilF, rtxA, rtxC, and vvhA. Of the 30 V. vulnificus comparative strains, 80% of the C-genotype strains have all of these genes, whereas 40% of the E-genotype strains have all of them. In particular, pilA were identified in 80% of the C-type strains and 40% of the E-type strains, showing more difference than other genes. Therefore, V. vulnificus 1908-10 had similar VF characteristics to those of type C strains. Multifunctional-autoprocessing repeats-in-toxin (MARTX) toxin of V. vulnificus 1908-10 contained 8 A-type repeats (GXXGXXXXXG), 25 B.1-type repeats (TXVGXGXX), 18 B2-type repeats (GGXGXDXXX), and 7 C-type repeats (GGXGXDXXX). The National Center for Biotechnology Information (NCBI) Basic Local Alignment Search Tool (BLAST) showed that the RtxA protein of V. vulnificus 1908-10 had the effector domain in the order of cross-liking domain (ACD)-C58_PaToxP-like domain- α/β hydrolase-C58_PaToxP-like domain.

• 한국군사과학기술학회지
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• 제27권4호
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• pp.507-515
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• 2024

Microbial forensics is a scientific discipline for analyzing evidence related to biological crimes by identifying the origin of microorganisms. Multiple locus variable number tandem repeat analysis(MLVA) is one of the microbiological analysis methods used to specify subtypes within a species based on the number of tandem repeat in the genome, and advances in next generation sequencing(NGS) technology have enabled in silico anlysis of full-length whole genome sequences. In this paper, we analyzed unknown samples provided by Robert Koch Institute(RKI) through The United Nations Secretary-General's Mechanism(UNSGM)'s external quality assessment exercise(EQAE) project, which we officially participated in 2023. We confirmed that the 3 unknown samples were B. anthracis through nucleic acid isolation and genetic sequence analysis studies. MLVA results on 32 loci of B. anthracis were analysed by using genome sequences obtained from NGS(NextSeq and MinION) and Sanger sequencing. The MLVA typing using short-reads based NGS platform(NextSeq) showed a high probability of causing assembly error when a size of the tandem repeats was grater than 200 bp, while long-reads based NGS platform(MinION) showed higher accuracy than NextSeq, although insertion and deletion was observed. We also showed hybrid assembly can correct most indel error caused by MinION. Based on the MLVA results, genetic identification was performed compared to the 2,975 published MLVA databases of B. anthracis, and MLVA results of 10 strains were identical with 3 unkonwn samples. As a result of whole genome alignment of the 10 strains and 3 unknown samples, all samples were identified as B. anthracis strain A4564 which is associated with injectional anthrax isolates in heroin users.

• Fisheries and Aquatic Sciences
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• 제27권3호
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• pp.145-158
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• 2024

Life history characteristics, habitat landscape, and historical events are believed to have shaped the patterns of genetic variation in many taxa. The bony lip barb, Osteohilus vittatus, represent a potamodromous fish that complete all life cycle in freshwater and is widely distributed in Southeast Asia. It usually lives in small rivers and other freshwater habitats, and movement between habitats for either food or reproduction has been typical. These life history characteristics may promote gene flow, leading to less structured populations. However, many freshwater habitats are fragmented, which restricts gene flow. We investigate how this interplay has shaped patterns of genetic variation and phylogeographic structure within this species in the Sundaland, a biodiversity hotspot with a complex geological history, using mitochondrial cytochrome oxidase I (mtCOI) as a genetic marker. Forty-six mtCOI sequences of 506 bp long were collected from ten localities, eight geographically isolated and two connected. The sequences were used for population genetic and phylogeographic analyses. Our results showed a low genetic diversity within populations but high between populations. There was a deep phylogeographic structure among geographically isolated populations but a lack of such structure in the connected habitats. Among geographically isolated populations, sequence divergence was revealed, ranging from 1.8% between Java and Sumatra populations to 12.2% between Malaysia and Vietnam. An indication of structuring was also observed among localities that are geographically closer but without connectivity. We conclude that despite high dispersal capacity, the joint effects of historical events, long-term geographic isolation associated with sea level oscillation during the Pleistocene, and restricted gene flow related to lack of habitat connectivity have shaped the phylogeographic structure within the O. vittatus over the Sundaland.

• Journal of Microbiology and Biotechnology
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• 제34권5호
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• pp.1146-1153
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• 2024

The increasing economic losses associated with growth retardation caused by Enterocytozoon hepatopenaei (EHP), a microsporidian parasite infecting penaeid shrimp, require effective monitoring. The internal transcribed spacer (ITS)-1 region, the non-coding region of ribosomal clusters between 18S and 5.8S rRNA genes, is widely used in phylogenetic studies due to its high variability. In this study, the ITS-1 region sequence (~600-bp) of EHP was first identified, and primers for a polymerase chain reaction (PCR) assay targeting that sequence were designed. A newly developed nested-PCR method successfully detected the EHP in various shrimp (Penaeus vannamei and P. monodon) and related samples, including water and feces collected from Indonesia, Thailand, South Korea, India, and Malaysia. The primers did not cross-react with other hosts and pathogens, and this PCR assay is more sensitive than existing PCR detection methods targeting the small subunit ribosomal RNA (SSU rRNA) and spore wall protein (SWP) genes. Phylogenetic analysis based on the ITS-1 sequences indicated that the Indonesian strain was distinct (86.2% nucleotide sequence identity) from other strains collected from Thailand and South Korea, and also showed the internal diversity among Thailand (N = 7, divided into four branches) and South Korean (N = 5, divided into two branches) samples. The results revealed the ability of the ITS-1 region to determine the genetic diversity of EHP from different geographical origins.

• Molecules and Cells
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• 제26권5호
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• pp.443-453
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• 2008

The Bric-a-brac, Tramtrack, Broad-complex (BTB) domain is a protein-protein interaction domain that is found in many zinc finger transcription factors. BTB containing proteins play important roles in a variety of cellular functions including regulation of transcription, regulation of the cytoskeleton, protein ubiquitination, angiogenesis, and apoptosis. Here, we report the cloning and characterization of a novel human gene, KLHL31, from a human embryonic heart cDNA library. The cDNA of KLHL31 is 5743 bp long, encoding a protein product of 634 amino acids containing a BTB domain. The protein is highly conserved across different species. Western blot analysis indicates that the KLHL31 protein is abundantly expressed in both embryonic skeletal and heart tissue. In COS-7 cells, KLHL31 proteins are localized to both the nucleus and the cytoplasm. In primary cultures of nascent mouse cardiomyocytes, the majority of endogenous KLHL31 proteins are localized to the cytoplasm. KLHL31 acts as a transcription repressor when fused to GAL4 DNA-binding domain and deletion analysis indicates that the BTB domain is the main region responsible for this repression. Overexpression of KLHL31 in COS-7 cells inhibits the transcriptional activities of both the TPA-response element (TRE) and serum response element (SRE). KLHL31 also significantly reduces JNK activation leading to decreased phosphorylation and protein levels of the JNK target c-Jun in both COS-7 and Hela cells. These results suggest that KLHL31 protein may act as a new transcriptional repressor in MAPK/JNK signaling pathway to regulate cellular functions.

• 한국환경농학회지
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• 제36권3호
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• pp.154-160
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• 2017

본 연구는 하천수 중 bisphenol계 화합물 종 6 (BPA, BPB, BPC, BPE, BPF, BPS)을 동시분석하기 위하여 GC-MS를 이용하였다. 또한 최적의 전처리 방법을 확립하고자 SPE 및 LLE법을 이용하여 표준시료로부터 검량선의 직선성, MDL, LOQ, 정확도 및 정밀도를 비교하였다. SPE 및 LLE 전처리 방법에 의한 MDL은 각각 $0.0005{\sim}0.0234{\mu}g/L$와 $0.0037{\sim}0.2034{\mu}g/L$, LOQ는 각각 $0.0015{\sim}0.0744{\mu}g/L$와 $0.0117{\sim}0.6477{\mu}g/L$, 검량선의 결정계수($r^2$)는 모두 0.9969이상 정확도는 각각 93.2~108%와 97.4~120%, 정밀도는 각각 1.7~4.6%와 0.7~6.5%범위로 만족한 정도관리 결과를 얻었다. 하지만 SPE법에 의한 MDL 및 LOQ 값은 LLE법보다 약 4~45배 정도 높은 감도를 보였고, 특히 BPA의 경우는 다른 화합물들보다 45배 정도 높았다. 따라서, 본 연구에서는 SPE법을 적용하여 하천수 시료를 분석하였고, 조사지점은 본류 7개, 지류 6개, 하수종말처리장 2개 지점을 선정하였다. Bisphenol계 화합물 중에서 BPB, BPC, BPE, BPF 및 BPS는 모두 불검출 되었으나, BPA 농도는 $0.0095{\sim}0.2583{\mu}g/L$ 범위로 본류 $0.0166{\sim}0.0810{\mu}g/L$, 지류 $0.0095{\sim}0.2583{\mu}g/L$, 하수종말처리장$0.0352{\sim}0.1217{\mu}g/L$으로 미량 수준이었다.

• 대한화학회지
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• 제50권6호
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• pp.494-505
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• 2006

이 연구에서는 중학교 1학년을 대상으로 리더유형에 따라 포용적, 설득적, 배타적, 리더부재 모둠으로 편성한 후 MBL실험수업에서 나타난 학생들의 언어적 상호작용을 분석하였다. 상호작용 전체 빈도는 포용적 리더가 있는 모둠이 가장 높았고 설득적, 배타적, 리더 부재 모둠 순으로 나타났다. 인지적 측면의 질문, 응답, 의견제시, 의견받기와 관련된 상호작용 빈도는 포용적 리더가 있는 모둠에서 가장 높았으나, 정의적 측면의 행동참여와 분위기조절에 관련된 상호작용빈도는 배타적 리더가 있는 모둠에서 가장 높았다. 리더 유형에 따라 모둠내 언어적 상호작용은 매우 다른 양상을 보였는데, 그 특성을 분석한 결과, 포용적 리더가 있는 모둠은 토론활동의 분위기가 매우 허용적 이었으며, 모둠 구성원들이 활발하게 토론활동에 참여하였고, 모둠에 대한 소속감과 자부심을 나타내기도 하였다. 설득적 리더가 있는 모둠은 실험 및 토론활동을 리더학생이 주도하였고, 동료학생들은 리더에게 도전하는 일은 거의 일어나지 않았으며 오히려 의지하는 경향을 보였다. 배타적 리더가 있는 모둠의 경우는 리더와 동료들의 관계가 원만하지 않아 불만, 무시 등이 여과 없이 표현되었고, 리더 학생이 성취도가 낮은 동료들을 배려하지 못함으로서 활발한 토론활동을 하는데 장애요인이 되었다. 리더 부재 모둠의 경우, 토론활동의 내용이 마치 단답형 대화처럼 짧고, 단순하였다. 또한 동료들끼리의 질문에 대해서도 불명확한 대답이 많았고, 가끔씩 대화가 중단되기도 하였다.