• Animal Systematics, Evolution and Diversity
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• v.14 no.3
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• pp.173-192
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• 1998

This study was made as a part of the benethic fauna of Geojedo Island. The material was obtained from 17 localities (Fig. 1) along the coastal sea of Geojedo Island and it's adjacent waters during the years 1995-1998. This paper includes 38 species from a limited area of the southern part of Korea and includes 13 previously known species by Rho(1975-1991). Of these Didemnum (D.) pardum, Symplegma oceania, and Styela coriacea, are new to the Korean fauna, and 22 species are newly added to the fauna of Geojedo Island. We provided taxonomic notes and brief notes on the ascidian fauna, and the biogeographical distribution of Geojedo island. Its ascidian fauna are characterized by a high percentage of 18(47.4%) warm-water species and the extreme scarcity of eight(21.1%) boreal-water forms. This result may be attributable to the fact that Geojedo island and its adajacent waters are located under the influence of the warm Kuroshio Current.

• Korean Journal of Soil Science and Fertilizer
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• v.35 no.4
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• pp.243-252
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• 2002

To develop indicators for soil health evaluation, biological characteristics of native soils from the different parent materials were studied. Survival rate of fluorescent Pseudomonas in soils was the lowest as 0.1% while those of thermophilic Bacillus and alkaliphilic bacteria were over the 90% by the soil drying stress. There was positive relationship between soil microbial biomass and organic carbon exudated from the microbial biomass by the treatment. The average air-drying effect of soils was 39.7% with ranges of 9.7~95.0%. The propagules of mesophilic Bacillus and Gram negative bacteria were increased by the re-wetting of dried soils. Soil pH affected positively to the recovering rate of microbial number. Average recovering rate of microbes was 65.3%, and there was positive relationship between microbial biomass recovery and fluorescent Pseudomonas population.

• Journal of Life Science
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• v.18 no.4
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• pp.565-571
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• 2008

Due to rapid development of bioinformatics technologies, various biological data have been produced in silico. So now days complicated and large scale biodata are used to accomplish requirement of researcher. Developing visualization and annotation tool using them is still hot issues although those have been studied for a decade. However, diversity and various requirements of users make us hard to develop general purpose tool. In this paper, I propose a novel system, Genome Viewer and Annotation tool (GenoVA), to annotate and visualize among genomes using known information and multiple relation graph. There are several multiple alignment tools but they lose conserved area for complexity of its constrains. The GenoVA extracts all associated information between all pair genomes by extending pairwise alignment. High frequency conserved area and high BLAST score make a block node of relation graph. To represent multiple relation graph, the system connects among associated block nodes. Also the system shows the known information, COG, gene and hierarchical path of block node. In this case, the system can annotates missed area and unknown gene by navigating the special block node's clustering. I experimented ten bacteria genomes for extracting the feature to visualize and annotate among them. GenoVA also supports simple and rough computational annotation of new genome.

• 한국해양학회지
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• v.24 no.4
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• pp.184-193
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• 1989

An investigation on the soft-bottom macrobenthic community in the inner Kyeonggi Bay was conducted in July, October of 1987 and February, May of 1988. The benthic fauna comprised a total of 87 species and showed mean density of 550 indiv./$m^2$. Major faunal groups are polychaetes, molluks, and crustaceans, corresponding to 64.7%, 17.4%, and 15.2% in total abundance respectively. The most abundant species was Tharyx sp. (10.9%), and followed by Mactra veneriformis (10.5%), Mediomastus sp. (8.6%), and Glycinde sp. (8.0%) etc.. The important species in the intertidal zone were Mactra veneriformis, Hinia festiva, and Nephtys californiensis, whereas those in subtidal channel region were Tharyx sp., mediomastus sp., Sternaspis scutata, and Nephtys polybranchia. The study area could be divided into 4 station groups based on the species composition; two groups within interidal flat and two in channel regions. Each station group sustained its specific benthic faunal assemblage; Mactra-Hinia, Aricidea-Haploscoloplos assemblages in the intertidal flat and Harpiniopsis-Urothoe, Mediomastus-Sternaspis assemblages in the subtidal channel region. The Mediomastus-Sternaspis assemblage showed the highest species number and population density, and also did the highest diversity and evenness indices. The Harpiniopsis-Urothoe assemblage showed the poor species composition and abundance, and so recorded the highest dominance index. Two assemblages in the intertidal flat had the intermediate values in all the biological parameters. The northern channel region of zone S-2 showed the high abundance in species composition, which seems to be caused by the heterogeneous sediment and the organic enrichment from the Han River and the Incheon industrial complex.

• Korean Journal of Ecology and Environment
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• v.49 no.4
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• pp.308-319
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• 2016

In order to evaluate the role of macrophytes as refuge of zooplankton on physical distribution (i.e. summer rainfall), we investigated the environmental factors, macrophytes, and zooplankton in waterside zones (macrophytes zones) and open water zones of 17 wetlands from May and August, 2011. In this study, a total of 51 zooplankton species were identified, and Polyarthra sp. and Diaphanosoma brachyurum were found to be the most dominant species. Waterside area of each wetland were occupied by a total of 10 macrophyte species, species composition and biomass (dry weight) were different in the survey sites. Zooplankton was more abundant in waterside zone than open water zones lacking macrophytes (One-way ANOVA, df=2, F=27.1, P<0.05), in particular, waterside zone of 1, 8, 9, 10, and 11 wetland were supported by high zooplankton density after summer rainfall. This wetlands were developed by various macrophyte species than other wetland, and submerged plant commonly presented. Waterside zones with various macrophyte species provides complexity to the habitat structure, should be utilized as refuge to avoid disturbance such as summer rainfall. The results indicate that macrophytes are the key components to enhance bio-diversity include zooplankton, and the inclusion of diverse plant species in wetland construction or restoration schemes will result in ecologically healthy food webs.

• Horticultural Science & Technology
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• v.19 no.1
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• pp.29-33
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• 2001

This study was carried out to discriminate potato cultivars and breeding lines by specific molecular markers using random amplified polymorphic DNA (RAPD) analysis. The genotypes of potatoes used for analysis were eight cultivars and five breeding lines. Some of those show much phenotypic resemblances among them because 'Jopung', 'Daekwan70', 'Gawon', and 'Daekwan72' have immediate parental relationship with 'Superior', 'Irish Cobbler', 'Namsuh', and 'Atlantic', respectively. So, there are many difficulties to distinguish the varieties by the morphological characteristics. Three URP primers, URP2, URP4, and URP8 were selected for promising primers to discriminate potato genotypes or cultivars. The three URP primers were shown very high reproducibility because of the relatively high annealing temperature and long primer size. Although the results of similarity analyses did not always reflect the genetic relationship between potato varieties, the reproducible pattern of amplified DNA bands by URP primers showed possibility for molecular markers for discrimination of potato genotype or cultivar.

• Korean Journal of Environmental Biology
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• v.35 no.4
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• pp.566-572
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• 2017

For four times, zooplankton collection were conducted seasonally in October 2015-July 2016 at five sites located in the wet lands of the lower Han River, ie., Si-am, Sung-dong, Gong-reung stream, San-nam and Jang-hang. A total of 46 species of zooplankton were collected, which comprise 25 species of rotifers, seven cladocerans, ten copepods, and one species of nematod, ostracod and decapod, respectively. No brackish and marine species were distributed except for two species of brackish water copepods. Prosperity in the species number of 15 species was observed in October at Sung-dong and Jang-hang. The maximum abundance was recorded in March at Si-am with $8,000indiv.\;L^{-1}$ with the explosion of Brachionus calyciflorus. Other sites also showed high abundances in March with the abundance higher than $5,000indiv.\;L^{-1}$. Except in March, the abundance levels were recorded as less than some hundred $indiv.\;L^{-1}$ throughout the study. Species diversity varied between 0.4-1.8. The gut contents of the copepodite showed that various diatoms might be their major food items, and lots of unidentified materials were also observed. The environmental conditions of water temperature, pH and dissolved oxygen content showed to vary $10.1-28.2^{\circ}C$, 7.1-8.6 and $4.5-11.0mg\;L^{-1}$, respectively.

• (The)Study of the Eastern Classic
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• no.54
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• pp.155-182
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• 2014

This study aimed to find the possibility of interactions between the Doctrine of the Mean and evolutionary biology. Between the two disciplines, there exists a huge gap such as "traditional era vs. modern times" and "humanities vs. natural science." However, this paper assumed that an analysis of their similarities and differences would allow us to find the possibility for them to interact and communicate with each other. For this purpose, the author proposed a three-step approach to studies of the following topics: human nature in step 1, validity of reasons to live in step 2 and biologically affinitive relations in step 3. The present study in step 1 pays attention to the similarities and differences between genes and in-ui-ye-ji (a set of four Confucian values: benevolence, righteousness, propriety and wisdom). This step discusses the issues of ri (principle) and ki (generative force) in Zhu Xi's theory vs. genes and vehicles in evolutionary biology, innate goodness vs. altruism of genes and in-ui-ye-ji vs. epigenetic rules. In step 2, attention is paid to the similarities and differences between natural selection and shi zhong (時中). They are discussed in terms of the upset of the law of nature vs. mutation, changes vs. evolutions and shi zhong vs. natural selection/adaptation. Step 3 focuses on the similarities and differences between species diversity and li-yi-fen-shu (one li and its many aspects). The discussion in this step addresses the issues of part or whole vs. li-yi-fen-shu, biological affinity vs. single energy and ecosystem vs. "the earth moves orderly, and everything thereon flourishes." If these studies are conducted as planned, a new direction can be set for Zhu Xi's neo-Confucianism. Further, the interaction between humanities and natural science will pave the way for us to overcome asymmetry between different disciplines.

• Korean Journal of Environment and Ecology
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• v.32 no.6
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• pp.582-590
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• 2018

Although there are many studies of the effect of climate change on the breeding phenology and community diversity of amphibians, the studies of variations in reproductive population size of individual species according to climate change are still lacking. We examined the effect of climate change on the reproductive population size of Rana huanrenensis and Hynobius leechii, which bred in mountain valleys, by surveying the reproductive population of the two species between 2005 and 2012 and analyzing the correlation between the variation of the outdoor population and the surrounding climate change factors, obtained from a meteorological observatory located at 5.6 km from the study site. The size of the reproductive population of the two species commonly fluctuated with aan pproximately 3.5-year cycle. That of H. leechii, in particular, decreased significantly over eight years. The air temperature tended to more closely relate with the reproductive population size of R. huanrenensis as was the case of the precipitation with that of H. leechii. The yearly mean highest temperature and spring mean temperature variation consistently decreased over the eight years, and the latter was related with the significantly decreased size of H. leechii reproductive population. These results showed that recent climate change directly could affect the reproductive population size of amphibians, particularly H. leechii, which breeds in mountain valleys.

• Korean Journal of Environmental Biology
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• v.36 no.4
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• pp.439-455
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• 2018

Hanon made in the largest maar crater in Korea, is the only paddy field ecosystem in Jeju Island that has been conducting rice farming, for the past 500 years. Flora surveys were conducted eight times, 2015-2018, to understand floristic characteristics and a restoration plan of the study area. As a result, vascular plants of Hanon paddy fields were listed 225 taxa that consist of 55 families, 151 genera, 194 species, 1 subspecies, 25 varieties, and 4 forms. The taxonomic group including the most species, was Gramineae (36 taxa). The next families were Compositae (29 taxa), Cyperaceae (20), Leguminosae (13), and Polygonaceae (11). Biological type of the Hanon was $Th-R_5-D_4-t$ type. The rare plants revealed 3 taxa; Ottelia alismoides(L.) Pers., Acorus calamus L., Pseudoraphis ukishiba Ohwi. Endemic plant revealed 1 taxon; Saururus chinensis(Lour.) Baill. Forty three taxa were naturalized plants composed of 15 families, 24 genera, 41 species, and 2 varieties. The urbanization index and naturalized index were 13.3% and 16.9%, respectively. The Hanon has high plant diversity, including endemic plant and rare plants, and is the only rice paddy in Jeju Island. So, the Hanon has sufficient values in ecological and socio-cultural aspects, so it should be maintained continuously in the future.