• Title/Summary/Keyword: biodiversity assessment

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The Study on the Utilization of Soil Seed Bank for the Restoration of Original Vegetation (원식생 복원을 위한 산림표토내의 매토종자 적정 활용방안 연구)

  • Kim, Nam-Choon;Kim, Hoyeon;Choi, Mi Yeon
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.18 no.6
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    • pp.201-214
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    • 2015
  • This study was conducted to identify forest topsoil's usefulness from July 2013 to Oct 2014. Generally, there are abundant seeds in topsoils and it can be used at restoration works. Mt. GARIWANG is famous for biodiversity in Korea. This study was aimed to find out the suitable utilization methods of natural topsoils for restoration works at sky-slopes construction sites. Test beds was made to identify suitable collecting times and suitable topsoil thickness. The main results are summarized as follows. First, Mt. GARIWANG have diverse species and in topsoils we can find lots of burried seeds which can be used at restoration works. Second, according to indoor experiment, as the depth of topsoil used thicker, the number of plants and coverage rates were increased. Also, there were no distinct differences in coverage rates between 5cm and 8cm thick topsoil plots and it can be possible to use at least 3cm thick topsoils even thou lower coverage rates. Third, as the results of research about indoor and outdoor experimental plots, there were difference in plant emergency. If we use the stabilizer to protect soil erosion, then we can get more increased results at sloped outdoor experimental plots. Fourth, based on environmental impact assessment, there was 389 species in whole region of Mt. GARIWANG. Through this seed bank experiments, we can find 23 varieties, including 4 tree varieties and 19 herbaceous varieties. We can find lots of native herbaceous species from topsoils. Fifth, this research was done at the specific area of Mt. GARIWANG and used limited topsoils. But we monitoring more longer periods, then there will be more useful outcomes. Finally by researching topsoils of Mt. GARIWANG, we can find diverse native plants. Thus, we must reuse natural topsoils of Mt. Gariwang for restoration of original vegetation.

An assessment of the taxonomic reliability of DNA barcode sequences in publicly available databases

  • Jin, Soyeong;Kim, Kwang Young;Kim, Min-Seok;Park, Chungoo
    • ALGAE
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    • v.35 no.3
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    • pp.293-301
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    • 2020
  • The applications of DNA barcoding have a wide range of uses, such as in taxonomic studies to help elucidate cryptic species and phylogenetic relationships and analyzing environmental samples for biodiversity monitoring and conservation assessments of species. After obtaining the DNA barcode sequences, sequence similarity-based homology analysis is commonly used. This means that the obtained barcode sequences are compared to the DNA barcode reference databases. This bioinformatic analysis necessarily implies that the overall quantity and quality of the reference databases must be stringently monitored to not have an adverse impact on the accuracy of species identification. With the development of next-generation sequencing techniques, a noticeably large number of DNA barcode sequences have been produced and are stored in online databases, but their degree of validity, accuracy, and reliability have not been extensively investigated. In this study, we investigated the extent to which the amount and types of erroneous barcode sequences were deposited in publicly accessible databases. Over 4.1 million sequences were investigated in three largescale DNA barcode databases (NCBI GenBank, Barcode of Life Data System [BOLD], and Protist Ribosomal Reference database [PR2]) for four major DNA barcodes (cytochrome c oxidase subunit 1 [COI], internal transcribed spacer [ITS], ribulose bisphosphate carboxylase large chain [rbcL], and 18S ribosomal RNA [18S rRNA]); approximately 2% of erroneous barcode sequences were found and their taxonomic distributions were uneven. Consequently, our present findings provide compelling evidence of data quality problems along with insufficient and unreliable annotation of taxonomic data in DNA barcode databases. Therefore, we suggest that if ambiguous taxa are presented during barcoding analysis, further validation with other DNA barcode loci or morphological characters should be mandated.

Food Hazard Analysis During Dried-laver Processing

  • Son, Kwang-Tae;Lach, Thea;Jung, Yeounjoong;Kang, Shin-Kook;Eom, Sung-Hwan;Lee, Dae-Sung;Lee, Myung-Suk;Kim, Young-Mog
    • Fisheries and Aquatic Sciences
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    • v.17 no.2
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    • pp.197-201
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    • 2014
  • This study was performed to identify and assess food hazards during dry laver processing. Samples including raw materials, intermediates, and finished products during dried-laver processing were collected from seven dried-laver processing facilities, and microbial analyses were conducted. Microbial levels such as total coliforms and total viable cell count (TVC) increased as the processing steps progressed. TVC and total coliforms ranged from <30 to $9.1{\times}10^7$ CFU/g and <18 to 27,600 MPN/100 g for intermediates and finished products obtained during dried-laver processing, respectively. However, no fecal coliform was detected in the samples. Additionally, food-borne bacteria including Bacillus cereus, Listeria monocytogenes, Salmonella sp., Staphylococcus aureus, and Vibrio parahaemolyticus were not identified in finished products. For heavy metal content, arsenic ranged from 30.18 to 39.05 mg/kg, mercury from 0.005 to 0.009 mg/kg, and cadmium from 0.076 to 0.318 mg/kg dry mass in all finished products. However, lead was not detected in samples tested in this study. In conclusion, dried-laver products were safe based on the levels of food-borne bacteria and heavy metal contents. However, it is important to reduce total viable cell counts and total coliforms during dried-laver processing.

Assessment of biodiversity in rice paddy ecosystem (논 생태계 내에서의 생물다양성 평가)

  • Park, Kwang-Lai;Jung, Won-Kyo;Choi, Jae-Woong;Kim, Yeong
    • Proceedings of the Korean Society of Organic Agriculture Conference
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    • 2009.12a
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    • pp.291-291
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    • 2009
  • 쌀 생산관리 방법에 따른 논 생태계의 생물다양성을 조사하기 위하여 관행, 우렁이, 투구새우, 심수관개, 오리농법 등으로 구분하여 벼 재배기간 동안 수서생물종과 식물종을 조사하였다. 논물과 토양에 서식하는 생물종을 쿼드라트법을 활용하여 조사한 결과, 토양생물의 풍부도는 이앙기는 관행농법, 분얼기에는 투구새우 농법이 높았으며, 출수기에는 무논, 쌀겨 농법에서 가장 많은 토양생물이 서식하고 있었다. 또한, 줄 채집에 의한 수서생물 종은 분얼기와 출수기, 육상생물은 수확기때 풍부하였으며 관행농법은 분얼기에 가장 출현종이 많았던 반면 오리농법은 전 조사기간 동안 가장 개체수가 적었으며 무논+쌀겨농법이 생물다양성 기여도가 가장 높았다. 생물조사 결과 관행보다는 유기재배논에서 종 풍부도가 2배이상 높게 나타났으며, 쌀겨농법은 이앙기~분얼기까지는 쌀겨 분해에 따른 유기산에 의해 수서곤충이 급감되나 분얼기이후 개체수가 회복되어 무논+쌀겨구에서 가장 높았다. 전 조사지점 논둑의 식물 분포는 농법별 유의성이 없었으며 논둑의 우점식물은 쑥, 개망초,질경이, 클로버, 미나리, 미국가막사리, 쇠뜨기, 둑새풀, 미나리 등이었다. 출수기를 전후하여 관행논과 유기논, 그리고 둠벙의 유무로 구분하여 생물종을 조사한 결과, 먼저 관행논과 유기논에서 서식하는 생물종은 비슷하지만 수서생물의 개체수는 유기논이 관행논보다 43-54%나 많았다. 한편, 둠벙의 유무에 의한 생물조사에서는 둠벙이 있는 논이 없는 논보다 서식종이 35-47%정도 높은 경향을 나타내어 생물다양성을 증진하기위해서는 낙수기때 수서생물들의 피난처를 확보하여 주는 소규모 둠벙이 효과적인 것으로 판단되었다.

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Comparative Analysis of Groundwater-Ecosystem Service Value of Protected Horticulture Complex and Paddy Fields (시설원예단지와 논의 지하수 생태계서비스 가치 비교 분석)

  • Son, Jinkwan;Choi, Deuggyu;Lee, Siyoung;Kang, Donghyun;Park, Minjung;Yun, Sungwook;Kim, Namchoon;Kong, Minjae
    • Journal of Korean Society of Rural Planning
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    • v.24 no.2
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    • pp.47-58
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    • 2018
  • Protected horticultural complexes would increase crop productivity but would adversely affect the groundwater recharge function in the area because the impervious area would increase. Further, they would limit the movement of living beings, affecting biodiversity. Therefore, this study evaluated the groundwater ecosystem services provided by protected horticultural complexes in terms of consistent utilization of water. The estimated amounts of groundwater loss obtained through quantitative assessment of groundwater infiltration showed that a higher impervious area results in higher losses. We, therefore, predict a much higher loss if similar changes in land use are realized on a nationwide scale. A plan to promote groundwater recharge in impervious areas is actively being discussed for urban areas; however, this plan is not yet applicable to farming areas. We consider it is essential to develop groundwater infiltration facilities for horticultural complexes, infiltration trenches, permeable pavements, surface water storage facilities, water purification facilities, etc. Further research and development of groundwater infiltration facilities is important for consistent utilization of water and the improvement of ecosystem services.

Impact assessment to the Water Environmental and Biodiversity on the Constant Stagnation Zone by River Floating Debris (하천 부유 쓰레기 상습 정체 구간의 수환경 및 생물다양성 영향 평가)

  • Kim, Heung-Min;Bak, Su-Ho;Jang, Seon-Woong;Kwak, Seok Nam;Yoon, Hong-Joo
    • The Journal of the Korea institute of electronic communication sciences
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    • v.13 no.1
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    • pp.213-220
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    • 2018
  • Investigation and policy related to floating debris are focused on water treatment or disposal costs, and water pollution caused by floating debris has not been evaluated. In this study, it was surveyed the water environment pollution on the stagnation zone by floating debris in Nakdong River basin of Busan Metropolitan City. The water quality of the constant stagnation zone had lower DO than that of the non-stagnation zone. COD and Chl-a showed similar concentrations in the both zones. As a result of the collecting net surveys which were kept floating during 3 months, the most abundant species(4 species) of arthropods appeared, and Chironomidae sp. is dominant. It was also resistant to the deteriorated water quality, and emerged as a Lepomis macrochirus on the stagnant waters with a slowly flow rate.

Patterning Waterbird Assemblages on Rice Fields Using Self-Organizing Map and Random Forest (자기조직화지도(Self-organizing map)와 랜덤 포레스트 분석(Random forest)을 이용한 논습지에 도래하는 수조류 군집 특성 파악)

  • Nam, Hyung-Kyu;Choi, Seung-Hye;Yoo, Jeong-Chil
    • Korean Journal of Environmental Agriculture
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    • v.34 no.3
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    • pp.168-177
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    • 2015
  • BACKGROUND: In recent year, there has been great concern regarding agricultural land uses and their importance for the conservation of biodiversity. Rice fields are managed unique wetland for wildlife, especially waterbirds. A comprehensive monitoring of the waterbird assemblage to understand patterning changes was attempted for rice ecosystem in South Korea. This rice ecosystem has been recognized as one of the most important for waterbirds conservation. METHODS AND RESULTS: Biweekly monitoring was implemented for the 4 years from April 2009 to March 2010, from April 2011 to March 2014. 32 species of waterbirds were observed. Self-organizing map (SOM) and random forest were applied to the waterbirds dataset to identify the characteristics in waterbirds distribution. SOM and random forest analysis clearly classified into four clusters and extract ecological information from waterbird dataset. Waterbird assemblages represented strong seasonality and habitat use according to waterbird group such as shorebirds, herons and waterfowl. CONCLUSION: Our results showed that the combination of SOM and random forest analysis could be useful for ecosystem assessment and management. Furthermore, we strongly suggested that a strict management strategy for the rice fields to conserve the waterbirds. The strategy could be seasonally and species specific.

The relationship between non-cognitive student attributes and academic achievements in a flipped learning classroom of a pre-dental science course

  • Kim, Minsun;Roh, Sangho;Ihm, Jungjoon
    • Korean journal of medical education
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    • v.30 no.4
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    • pp.339-346
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    • 2018
  • Purpose: The purpose of this study was to examine whether non-cognitive student attributes such as learning style and personality type affected academic performance in a flipped learning classroom of a pre-dental undergraduate science course. Methods: 'Biodiversity and Global Environment,' a 15-week, 3-credit course, was designed as a flipped class in Seoul National University School of Dentistry in 2017. Second-year pre-dental students were required to enroll in the course and to engage in online learning and in-class discussion. The Kolb's Learning Style Inventory and the Myers-Briggs Type Indicator were conducted to measure non-cognitive student factors. Independent samples t-test and multivariate regression analyses were used to examine the relationships between self-rated measurements and academic achievement. Results: More than half of the students enrolled in the flipped science course had an assimilator learning style (50%), followed by convergers (24%), accommodators (16%), and divergers (10%), and their personality types were dominated by the introverted, sensing, thinking, and judging types, respectively. Examining group differences using the t-test demonstrated a significant relationship between the diverger group and higher academic success. In particular, the multivariate regression analysis indicated that both thinking types and female students performed better in discussion than feeling types and male students. Conclusion: To operate the flipped learning classroom more effectively in medical and dental education, the instructor should carefully develop and apply a more tailored facilitation and relevant assessment by considering student learning styles and personality types.

Flora of a Cool Temperate Forest Around Restoration Center for Endangered Species, Yeongyang

  • Kim, Seongjun;Lee, Chang-Woo;Park, Hwan-Joon;Lee, Byoung-Doo;Hwang, Jung Eun;An, Jiae;Park, Hyung Bin;Baek, Ju Hyeong;Kim, Pyoung Beom;Kim, Nam Young
    • Proceedings of the National Institute of Ecology of the Republic of Korea
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    • v.2 no.1
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    • pp.70-75
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    • 2021
  • The present study aimed to clarify flora living at the area of Restoration Center for Endangered Species in Yeongyang, Gyeongbuk Province. In May, August, and September 2019 and in May and July 2020, all of vascular plants were recorded, and endangered, Korea endemic, and exotic plant species were further identified. The study site contained a total of 418 floral taxa (98 families, 261 genera, 384 species, 4 subspecies, 27 variations, and 3 formations), in which Magnoliophyta accounted for larger proportion (95.2%) than Pteridophyta (3.6%) and Pinophyta (1.2%). In addition, 1 endangered (Cypripedium macranthos Sw.) and 5 Korea endemic species (Aconitum pseudolaeve Nakai, Eleutherococcus divaricatus var. chiisanensis [Nakai] C.H. Kim & B.-Y. Sun, Lonicera subsessilis Rehder, Paulownia coreana Uyeki, and Weigela subsessilis [Nakai] L.H. Bailey) were detected. The number of exotic species was 33, consisting of 4 invasive-exotic, 4 potentially invasive-exotic, and 25 non-invasive species. Compared to a previous assessment before the establishment of the center (in 2014), there were increases in total floral taxa (from 361 to 418), endangered species (from 0 to 1), and exotic species (from 26 to 33). These results possibly reflect temporal changes in floral community, which should be confirmed through subsequent long term monitoring.

Assessment of anatomical characteristics of the medicinal plant African cherry (Prunus africana) for its accurate taxonomic identification

  • Komakech, Richard;Yang, Sungyu;Song, Jun Ho;Choi, Goya;Kim, Yong-Goo;Okello, Denis;Omujal, Francis;Kyeyune, Grace Nambatya;Matsabisa, Motlalepula Gilbert;Kang, Youngmin
    • Journal of Plant Biotechnology
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    • v.49 no.2
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    • pp.139-144
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    • 2022
  • The genus Prunus (family: Rosaceae) consists of over 400 plant species and exhibits vast biodiversity worldwide. Given the wide distribution of this genus, its taxonomic classification is important. Anatomical characteristics are conserved and stable and can therefore be used as an important tool for the taxonomic characterization of plants. Therefore, this study aimed to assess and document the anatomical characteristics of the leaf, stem, and seed of P. africana using micrographs and photographs for possible use in the identification, quality control, and phylogenetic analysis of the species. The anatomical sections of a young stem revealed a cortex consisting of isodiametric parenchyma cells, druse crystals, primary vascular bundles, and pith. The mature stem bark majorly consisted of the rhytidome, with the periderm densely arranged in multiple layers; a cluster of stone cells; and sclerenchyma. The leaf sections were hypostomatic, with stomata sizes ranging from 18.90-(22.34)-26.90 × 15.41-(18.40)-21.22 ㎛. The leaf sections showed the presence of characteristic druse crystals, vascular bundles, and mesophyll layers. The pericarp contained the epicarp, mesocarp, and endocarp, with their thickness being approximately 350-400, 300-350, and 30-50 ㎛, respectively. In addition, it contained a seed testa with a thickness of approximately 50-60 ㎛. The morphological and anatomical characteristics observed in P. africana leaves, stems, and seeds in this study could serve as useful data for the taxonomic identification of this species.