• 제목/요약/키워드: bio-data processing

검색결과 163건 처리시간 0.047초

구제역 방제를 위한 중소형 살포기의 성능실험 및 영상처리를 이용한 분석 (Performance Test and Analysis of The Small Medium-sized Sprayer for Control of Foot-and-mouth Disease Using Image Processing)

  • 김재열;홍준택;감동환;민병로
    • 한국축산시설환경학회지
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    • 제17권1호
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    • pp.23-32
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    • 2011
  • 본 연구의 목적은 축산 농가에서 병원균의 전염성으로 막대한 손실을 가져오고 있어 이를 효율적으로 방제작업을 할 수 있는 살포기를 개발하고 성능실험은 영상처리를 이용하여 분석하는 것이다. 실험 설계는 용지를 10m 간격으로 세로 5개, 가로 7개 총 35개를 설치하여 살포량과 살포거리를 실험 하였다. 실험 방법은 A4용지를 바닥에 고정하고 색소를 살포하여 얻은 데이터를 영상처리를 통하여 이치화 하였다. 성능실험 후 용지를 수거하여 거리를 분석한 결과 60m까지 살포가 가능한 것을 알 수 있었다. 살포기의 이동거리별 A4 용지의 이치화에 대한 검정색 비율은 30m까지는 살포가 높게 나타났다. 실험을 통해 60m까지 살포가 가능하여 축산 농가의 방제작업에 사용이 가능할 것으로 판단된다.

A Study on the Quality of Photometric Scanning Under Variable Illumination Conditions

  • Jeon, Hyoungjoon;Hafeez, Jahanzeb;Hamacher, Alaric;Lee, Seunghyun;Kwon, Soonchul
    • International journal of advanced smart convergence
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    • 제6권4호
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    • pp.88-95
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    • 2017
  • The conventional scan methods are based on a laser scanner and a depth camera, which requires high cost and complicated post-processing. Whereas in photometric scanning method, the 3D modeling data is acquired through multi-view images. This is advantageous compared to the other methods. The quality of a photometric 3D model depends on the environmental conditions or the object characteristics, but the quality is lower as compared to other methods. Therefore, various methods for improving the quality of photometric scanning are being studied. In this paper, we aim to investigate the effect of illumination conditions on the quality of photometric scanning data. To do this, 'Moai' statue is 3D printed with a size of $600(H){\times}1,000(V){\times}600(D)$. The printed object is photographed under the hard light and soft light environments. We obtained the modeling data by photometric scanning method and compared it with the ground truth of 'Moai'. The 'Point-to-Point' method used to analyseanalyze the modeling data using open source tool 'CloudCompare'. As a result of comparison, it is confirmed that the standard deviation value of the 3D model generated under the soft light is 0.090686 and the standard deviation value of the 3D model generated under the hard light is 0.039954. This proves that the higher quality 3D modeling data can be obtained in a hard light environment. The results of this paper are expected to be applied for the acquisition of high-quality data.

Toward Complete Bacterial Genome Sequencing Through the Combined Use of Multiple Next-Generation Sequencing Platforms

  • Jeong, Haeyoung;Lee, Dae-Hee;Ryu, Choong-Min;Park, Seung-Hwan
    • Journal of Microbiology and Biotechnology
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    • 제26권1호
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    • pp.207-212
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    • 2016
  • PacBio's long-read sequencing technologies can be successfully used for a complete bacterial genome assembly using recently developed non-hybrid assemblers in the absence of second-generation, high-quality short reads. However, standardized procedures that take into account multiple pre-existing second-generation sequencing platforms are scarce. In addition to Illumina HiSeq and Ion Torrent PGM-based genome sequencing results derived from previous studies, we generated further sequencing data, including from the PacBio RS II platform, and applied various bioinformatics tools to obtain complete genome assemblies for five bacterial strains. Our approach revealed that the hierarchical genome assembly process (HGAP) non-hybrid assembler resulted in nearly complete assemblies at a moderate coverage of ~75x, but that different versions produced non-compatible results requiring post processing. The other two platforms further improved the PacBio assembly through scaffolding and a final error correction.

농업용 수로부의 수위 보정을 위한 필터기법별 적용성 분석 (Analysis of Applicability by Filter Technique for Water Level Correction of Agricultural Canal)

  • 주동혁;나라;김하영;최규훈;윤형창;박상빈;유승환
    • 한국농공학회논문집
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    • 제65권5호
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    • pp.51-68
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    • 2023
  • Due to the recent integrated water management policy, it is important to identify a reliable supply amount for establishing an agricultural water supply plan. In order to identify the amount of agricultural water supply, it is essential to calculate the discharge by measuring the water level and flow velocity of reservoirs and canal agricultural water, and quality control to ensure reliability must be preceded. Unlike agricultural reservoirs, canal agricultural water are more sensitive to the surrounding environment and reservoir irrigation methods (continuous, intermittent irrigation, etc.), making it difficult to estimate general water level patterns and at the same time a lot of erroneous data. The Korea Rural Community Corporation is applying a filter technique as a quality control method capable of processing large quantities and real-time processing of canal agricultural water level data, and applicability evaluation is needed. In this study, the types of errors generated by the automatic water level measurement system were first determined. In addition, by using the manual quality control data, a technique with high applicability is derived by comparing and analyzing data calibrated with Gaussian, Savitzky-Golay, Hampel, and Median filter techniques, RMSE, and NSE, and the optimal parameters of the technique range was derived. As a result, the applicability of the Median filter was evaluated the highest, and the optimal parameters were derived in the range of 120min to 240min. Through the results of this study, it is judged that it can be used for quantitative evaluation to establish an agricultural water supply plan.

신경망을 사용한 사상체질 진단검사 개발 연구 (Development of Sasang Type Diagnostic Test with Neural Network)

  • 채한;황상문;엄일규;김병철;김영인;김병주;권영규
    • 동의생리병리학회지
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    • 제23권4호
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    • pp.765-771
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    • 2009
  • The medical informatics for clustering Sasang types with collected clinical data is important for the personalized medicine, but it has not been thoroughly studied yet. The purpose of this study was to examine the usefulness of neural network data mining algorithm for traditional Korean medicine. We used Kohonen neural network, the Self-Organizing Map (SOM), for the analysis of biomedical information following data pre-processing and calculated the validity index as percentage correctly predicted and type-specific sensitivity. We can extract 12 data fields from 30 after data pre-processing with correlation analysis and latent functional relationship analysis. The profile of Myers-Briggs Type Inidcator and Bio-Impedance Analysis data which are clustered with SOM was similar to that of original measurements. The percentage correctly predicted was 56%, and sensitivity for So-Yang, Tae-Eum and So-Eum type were 56%, 48%, and 61%, respectively. This study showed that the neural network algorithm for clustering Sasang types based on clinical data is useful for the sasang type diagnostic test itself. We discussed the importance of data pre-processing and clustering algorithm for the validity of medical devices in traditional Korean medicine.

Algorithm for Measurement of the Dairy Cow's Body Parameters by Using Image Processing

  • Seo, Kwang-W.;Lee, Dae-W.;Choi, Eun-G.;Kim, Chi-H.;Kim, Hyeon-T.
    • Journal of Biosystems Engineering
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    • 제37권2호
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    • pp.122-129
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    • 2012
  • Purpose: Recent mechatronics technology is the most appropriate high technology in agricultural applications to save repetitious labor. Method: Cow's body parameters were measured by several traditional measurers. Image processing technology was used to measure automatically their parameters to reduce labor and time. The parameters were measured form a small model cow which is easily measured, instead to a real cow. The image processing system designed and built for this project was composed of a PC, grabber card, and two cameras, which are located on the side and the top of the model cow. Tests of verification had measured 10 dairy cows. Result: Nine parameters of the model cow's body were measured, and the difference between the real data and the data by image processing was less than 16.7%. Based on the results of the research, the parameters of a real cow had measured of chest depth, withers height, Pelvic arch height, body length, slope body length, chest width, hip width, thurl width, and pin bone width were compared with image processing data. Conclusions: In the Demonstration test, Result had obtained similar data of cow model experiments, and the most of errors were shown less than 5% relatively good result.

생체정보측정기와 연계된 DAS(Data Acquisition System) 설계 (Implementation of DAS for Bio information Measuring)

  • 홍성웅;김윤서;김평중
    • 한국정보처리학회:학술대회논문집
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    • 한국정보처리학회 2009년도 추계학술발표대회
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    • pp.27-28
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    • 2009
  • 본 논문에서는 사용자자동인식, 실시간 상태 모니터링에 적합한 유헬스 시스템을 위한 생체정보측정기와 연계된 임베디드 미들웨어 DAS(Data Acquisition System)를 제안한다. DAS는 U-health 서비스를 제공하기 위해 센서정보와 정보처리기 중간에서 센싱 정보수집기의 불필요한 요소를 제거하고 HMS의 통신기능을 담당하는 기능을 갖는다.

k-t FOCUSS 알고리듬을 이용한 고분해능 4-D MR 혈관 조영 영상 기법 (High Resolution Time Resolved Contrast Enhanced MR Angiography Using k-t FOCUSS)

  • 정홍;김응엽;예종철
    • Investigative Magnetic Resonance Imaging
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    • 제14권1호
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    • pp.10-20
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    • 2010
  • 목적: 최근, 미국 애리조나 세도나에서 열린 국제자기공명학회 (ISMRM) 주관의 2009년 데이터 샘플링과 영상 복원에 관한 워크샵에서 자기공명영상 복원 대회가 열렸다. 이 대회는 time resolved contrast enhanced MR angiography 에 대한 고속 촬영의 실제 활용 가능성을 평가하기 위한 것이었다. 본 논문은 이 대회의 우승 결과를 얻은 k-t FOCUSS 알고리듬을 단계별로 자세히 묘사하도록 한다. 대상 및 방법: 본 그룹은 앞선 연구에서 비교적 덜 스파스한 심장 영상에 대해 k-t FOCUSS 알고리듬이 성공적으로 압축센싱 문제를 풀수 있음을 증명했다. 따라서 k-t FOCUSS 알고리듬을 time resolved contrast enhanced MR angiography 에 적용함으로써, 매우 정확한 영상 복원이 가능할 것이다. 영상 복원을 위해 X-ray 대뇌 혈관조영 영상으로부터 구성된 다운 샘플링된 데이터가 대회 주최측으로부터 공통으로 제시되었고, 방사선과 의사들이 각 복원된 영상에 대한 사전 정보 없이, 원래 영상과 복원된 결과를 비교함으로써, 영상의 질을 평가하였다. 결과: 다양한 다운샘플링에 대해 얻어진 결과들은 영상의 스파스 변환이나 샘플링 형태와 같은 압축센싱의 중요한 요소들에 의해 크게 영향을 받는다는 것을 보여주었다. 결론: 복원된 결과로부터, 압축센싱 동적자기공명영상 기법인 k-t FOCUSS 가 고해상도의 time resolved contrast enhanced MR angiography 를 가능하게 할 수 있음을 확인하였다.

영상 처리 방법을 이용한 후각 상피 세포의 섬모 운동 특성 분석에 관한 연구 (A Study on the Analysis of Mucociliary Beat Frequency Using Image Processing)

  • 이원진;박광석;민양기;성명훈
    • 대한의용생체공학회:학술대회논문집
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    • 대한의용생체공학회 1996년도 춘계학술대회
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    • pp.111-114
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    • 1996
  • Mucociliary transport is one of the essential defensive functions of the airway mucosa. In this paper, the objective and quantitative method of measuring CBF(Ciliary Beat Frequency) was developed based on the image processing method. Microscopic ciliary images are acquired through image processing board inside PC, and data necessary for the FFT(Fast Fourier Transform) analysis are extracted. By means of FFT analysis, maximum peak frequencies are found in each divided block of a whole acquired image. Finally using these frequencies, we compose a frequency map showing the spatial distribution of CBF's.

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바이오패스웨이를 위한 지식 표현 시스템 (UniPath: A Knowledge Representation System for Biopathways)

  • 이민수;박승수;강성희
    • 한국정보과학회논문지:소프트웨어및응용
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    • 제31권3호
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    • pp.343-352
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    • 2004
  • 최근 생물정보학의 발전과 함께 생물 관련 정보들이 기하급수적으로 증가하고 있다 연구 대상 도 DNA, RNA, 단백질에서 더 나아가 이들의 상호작용 및 조절 메커니즘에 의해 기능들이 어떻게 수행되는 지에 관한 바이오패스웨이까지 포함하게 되었다. 바이오패스웨이는 광대한 양의 정보를 포괄하며 구성체 사이의 유기적 관계를 나타내고 있는 것이므로 이를 컴퓨터로 처리하기 위해서는 보다 명료하며 직관적인 표현이 요구된다. 그러나 기존 시스템에서 사용하는 표기법들은 명료하게 해석될 수 없는 경우가 많고 표현 가능한 영역이 특정 한 단면에만 국한되어 있으며 같은 정보를 표현하여도 시스템마다 표현 레벨과 방식이 달라 시스템 확장 및 통합이 어려운 상황이다. 본 논문에서는 다양한 종류의 바이오패스웨이 지식을 체계적인 단일 표기법을 사용하여 보다 명료하고 효율적으로 표현하며 단일화되고 통일된 UniPath 표기법을 제안하였다. 또한 이 표기법을 적용하여 바이오패스웨이 지식을 그래프 형태로 편집함으로써 그 정보를 등록하며 XML 포맷으로 쉽게 변환할 수 있는 프레임 기반 지식 표현 시스템을 설계하고 실제 데이타에 적용함으로써 타당성을 검증하였다.