• Fisheries and Aquatic Sciences
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• v.17 no.3
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• pp.275-290
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• 2014

The marine ecosystem represents a vast and dynamic array of bio-resources attributed with its huge diversity and considered as potential untapped reservoirs for the development of functional foods for future health markets. Basically, marine microorganisms, sponges, algae, invertebrates such as crustaceans and mollusks along with marine fish species can be considered as marine bio-resources, which can be utilized to obtain different health benefits for humans, directly or after processing. Most of the bio-molecular components, such as lipids and proteins from these marine bio-resources, which can be extracted in large scale using the modern and advanced biotechnological approaches, are suitable drug candidates for the pharmaceutical industry as well as functional food ingredients for the food industry. Moreover, the furtherance of high throughput molecular biological techniques has already been incorporated with identification, mining and extraction of molecular components from marine bio-resources. In this review, potential marine bio-resources with respect to their extractable bio-molecules were described in details, while explaining the present and prospective methods of identification and extraction, which are integrated with advanced techniques in modern biotechnology. In addition, this provides an overview of future trends in marine biotechnology.

• Journal of Korean Society on Water Environment
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• v.24 no.1
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• pp.1-6
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• 2008

Biological and chemical sensors are the two most frequently used sensors to monitor the water resource. Chemical sensor is very accurate to pick up the types and to measure the concentration of the chemical substance. Drawback is that it works for just one type of chemical substance. Therefore a lot of expensive monitoring system needs to be installed to determine the safeness of the water, which costs too much expense. Biological sensor, on the contrary, can judge the degree of pollution of the water with just one monitoring system. However, it is not easy to figure out the type of contaminant with a biological sensor. In this study, an endeavor is made to identify the toxicant in the water using the shape of the chlorophyll fluorescence induction curve (FIC) from a biological monitoring system. Wem-tox values are calculated from the amount of flourescence of contaminated and reference water. Curve fitting is executed to find the representative curve of the raw data of Wem-tox values. Then the curves are digitalized at the same interval to train the neural network model. Taguchi method is used to optimize the neural network model parameters. The optimized model shows a good capacity to figure out the toxicant from FIC.

• Fisheries and Aquatic Sciences
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• v.15 no.2
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• pp.157-162
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• 2012

To analyze nucleotide sequence encoding internal transcribed spacer (ITS) regions specific to the Laminariaceae family, genomic DNA was isolated from six brown algae species distributed along the east coast of Korea. These included three species from the Laminariaceae family (Agarum clathratum Dumortier, Costaria costata [C. Agardh] Saunders, and Saccharina japonica Areschoug) and two species from the Alariaceae family (Undaria pinnatifida [Harvey] Suringer and Ecklonia cava Kjellman), both in the order Laminariales, and one species from the family Sargassaceae in the order Fucales (Sargassum serratifolium). Based on a sequence analysis of ITS-1 and ITS-2 for A. clathratum, C. costata, and E. cava, oligonucleotides were designed from the regions that showed sequence conservation in Laminariaceae. Following polymerase chain reaction using three sets of primers, amplification of ITS-1 and ITS-2 was detected in reactions using genomic DNA isolated from the species belonging to Laminariaceae, but not from the species belonging to the other families. The results indicate that this method can be used for the detection and identification of Laminariaceae species.

• Journal of Environmental Health Sciences
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• v.8 no.2
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• pp.1-11
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• 1982

A study on the water pollution of Gumho river by the relationship between physio-chemical conditions and water quality level by phytoplankton was examined at 6 sampling positions during the period from April 21 to August 11, 1982. Examination of physio-chemical water analysis such as temperature, pH, DO, BOD and biological analysis has shown 1. The average for Gumho river was 6.2 - 7.2 of pH, 2.6 - 9.4 mg/l of DO, 28.8 - 122.4 mg/l of BOD. 2. The phytoplankton identification in this survey period showed, Cyanophyceae is 7 genera 13 species, Bacillariophyceae 11 genera 32 species and Chlorophyceae 17 genera 27 species. 3. The results of biological water analysis were as follows: Banyawol was from oligosaprobic to $\beta$-mesosaprobic. Dongchon and Gumdan was from $\alpha$-mesosaprobic to $\beta$-mesosaprobic, 3rd gongdan was from oemesosaprobic to $\beta$-polysaprobic, Paldal was $\beta$-polysaprobic and Gangchang was repolysaprobic. 4. To appear dominant algae there were Microcycstis, Oscillatoria, Anabaena, Melosira, Nitzschia and Synedra.

• Journal of Korean Society of Water and Wastewater
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• v.30 no.4
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• pp.381-389
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• 2016

Jeju Eoseungsaeng lake which is a main water resource of Eoseungsaeng water treatment plant($Q=15,000m^3/d$) experienced high chromaticity(40 CU) and pH(9.46) in 2013. This could decline customer's confidence on drinking water quality unless proper identification and removal of chromaticity were implemented. To find cause of chromaticity, water monitoring on various water parameters including TOC, algal cell count, Chl-a, turbidity, SS, conductivity, etc. were implemented. Iron and manganese were excluded from the cause of chromaticity due to its low concentration (i.e., < 0.02 mg/L). Correlation among water parameters showed that relationship between algal cell count and chromaticity was the highest(R=0.43), which suggested that presumably the main reason of chromaticity occurrence in Jeju Eoseungsaeng lake was algae.

• Proceedings of the Korean Society of Fisheries Technology Conference
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• 2000.05a
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• pp.169-170
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• 2000

The green marine algae, Capsosiphon fulvescens has been cultivated in south coast of southern Korea for many years on a commercial scale. This species is very popular in Korean as a food supplement because of its attractive flavor and flexcible taste. It is, therefore, necessary to isolate and utilize qualified germplasms for mass production of this economic seaweed. Several reports have been published on phycological applications of RAPDs including the characterization of interspecific genetic variation, the identification of isolates and hybrids, and the study of phylogenetic relationships. However few authors have used RAPDs to assess the genetic variability among populations of a seaweed species(van Oppen et al., 1994; Alberto et al., 1997). The present study was undertaken for characterizing the identities of Capsosiphon fulvescens populations cultivating in Korea through the analysis of PCR based random amplified polymorphic DNAs (Welsh and MacClelland, 1990; Willams et al., 1990) and chemical composition aimed to isolate the useful strains for aquaculture. (omitted)

• The Journal of Natural Sciences
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• v.19 no.1
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• pp.27-35
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• 2008

The importance of microbial activity in the alteration and deterioration of stone and concrete walls has been frequently neglected. Organisms present on stone monuments can include photolithoautotrophs, such as algae, cyanobacteria, mosses, and higher plants. Because of their ability to survive repeated drying and rehydration cycles and high UV levels, the cyanobacteria are particularly important on exposed surfaces. The cyanobactria distributed on the surface of the stone cultural heritages in Gwanschoksa, Nonsan city were investigated. Chlorococcus sp. Aanabaena sp. Gloeocapsa sp Lyngbya sp. Stigomena sp. Synechocystis sp were identified. Haplaosiphon fontinalis and Stigonema turfaceum, which were not recoded is Korea, were also identified. Cells often have thick pigmented sheath in dry, sun-exposed environment and shorter filament, which can be different than that in aquatic systems. Special attention should be paid to production of an adequate DNA database in order to accelerate the rate at which information on the species present in biofilms become available.

• ALGAE
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• v.35 no.3
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• pp.293-301
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• 2020

The applications of DNA barcoding have a wide range of uses, such as in taxonomic studies to help elucidate cryptic species and phylogenetic relationships and analyzing environmental samples for biodiversity monitoring and conservation assessments of species. After obtaining the DNA barcode sequences, sequence similarity-based homology analysis is commonly used. This means that the obtained barcode sequences are compared to the DNA barcode reference databases. This bioinformatic analysis necessarily implies that the overall quantity and quality of the reference databases must be stringently monitored to not have an adverse impact on the accuracy of species identification. With the development of next-generation sequencing techniques, a noticeably large number of DNA barcode sequences have been produced and are stored in online databases, but their degree of validity, accuracy, and reliability have not been extensively investigated. In this study, we investigated the extent to which the amount and types of erroneous barcode sequences were deposited in publicly accessible databases. Over 4.1 million sequences were investigated in three largescale DNA barcode databases (NCBI GenBank, Barcode of Life Data System [BOLD], and Protist Ribosomal Reference database [PR2]) for four major DNA barcodes (cytochrome c oxidase subunit 1 [COI], internal transcribed spacer [ITS], ribulose bisphosphate carboxylase large chain [rbcL], and 18S ribosomal RNA [18S rRNA]); approximately 2% of erroneous barcode sequences were found and their taxonomic distributions were uneven. Consequently, our present findings provide compelling evidence of data quality problems along with insufficient and unreliable annotation of taxonomic data in DNA barcode databases. Therefore, we suggest that if ambiguous taxa are presented during barcoding analysis, further validation with other DNA barcode loci or morphological characters should be mandated.

• ALGAE
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• v.20 no.2
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• pp.141-150
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• 2005

To make a preliminary identification of the gracilarioid plant attached to cultivation ropes of Undaria pinnatifida and establish a method of cultivating this plant, the first taxonomic and cultivation studies on this species in Korea were conducted. This gracilarioid plant was identified from its morphological and anatomical features, as Gracilaria chorda. Growth tests using the 10, 20, and 30 cm cuttings of axes of G. chorda were performed twice, from May 3 to August 21, 2002 and from December 15, 2002 to April 3, 2003 in Ihoijin aquafarm, Hoijin, Jangheung, Jeollanamdo, Korea. In the first growing test, the thallus length of the 10, 20, and 30 cm cuttings increased twelve-fold, ten-fold, and seven-fold; the wet weight increased 81-fold, 60-fold, and 41-fold; the numbers of more than 10 cm-long branches increased 3.8-fold, 5.2-fold, and 6.1-fold, respectively. In the second growth test, the thallus length of the 10, 20, and 30 cm cuttings increased seven-fold, 5.5-fold, and four-fold; the wet weight increased 81-fold, 53-fold and 36-fold; the number of branches increased 3.8-fold, 7.3-fold, and 6.6-fold, respectively. The cultivation of G. chorda by vegetative regeneration using cuttings of thallus axes was successful for the first time in Korea.

• ALGAE
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• v.25 no.3
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• pp.141-153
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• 2010

Seagrass epiphyte blooms potentially have important economic and ecological consequences in Tampa Bay, one of the Gulf of Mexico's largest estuaries. As part of a Tampa Bay pilot study to monitor the impact of environmental stresses, precise characterization of epiphyte diversity is required for efficient management of affected resources. Thus, epiphyte diversity may be used as a rational basis for assessment of ecosystem health. In May 2001, epiphytic species encompassing green, brown and red macroalgae were manually collected from dense and sparse seagrass beds of Thalassia testudinum and Syringodium filiforme. A total of 20 macroalgal epiphytes, 2 Chlorophyta, 2 Phaeophyta, and 16 Rhodophyta, were found on T. testudinum and S. filiforme seagrass at the four sampling sites (Bishop Harbor, Cockroach Bay, Feather Sound, and Mariposa Key). The Rhodophyta, represented by 16 species, dominated the numbers of species. Among them, the thin-crusted Hydrolithon farinosum was the most commonly found epiphyte on seagrass leaves. Species number, as well as species frequency of epiphytes, is higher at dense seagrass sites than sparse seagrass sites. Four attachment patterns of epiphytes can be classified according to cortex and rhizoid development: 1) creeping, 2) erect, 3) creeping & erect, and 4) erect & holding. The creeping type is characterized by an encrusting thallus without a rhizoid or holdfast base. Characteristics of the erect type include a filamentous thallus with or without a cortex, and a rhizoid or holdfast base. The creeping and erect type is characterized by a filamentous thallus with a cortex and rhizoid. A filamentous thallus with a cortex, holdfast base, and host holding branch is characteristics of the erect and holdfast attachment type. This study characterized each species found on the seagrass for epiphyte identification.