• Title/Summary/Keyword: Zero region

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Molecular Cloning and Bioinformatic Analysis of SPATA4 Gene

  • Liu, Shang-Feng;Ai, Chao;Ge, Zhong-Qi;Liu, Hai-Luo;Liu, Bo-Wen;He, Shan;Wang, Zhao
    • BMB Reports
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    • v.38 no.6
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    • pp.739-747
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    • 2005
  • Full-length cDNA sequences of four novel SPATA4 genes in chimpanzee, cow, chicken and ascidian were identified by bioinformatic analysis using mouse or human SPATA4 cDNA fragment as electronic probe. All these genes have 6 exons and have similar protein molecular weight and do not localize in sex chromosome. The mouse SPATA4 sequence is identified as significantly changed in cryptorchidism, which shares no significant homology with any known protein in swissprot databases except for the homologous genes in various vertebrates. Our searching results showed that all SPATA4 proteins have a putative conserved domain DUF1042. The percentages of putative SPATA4 protein sequence identity ranging from 30% to 99%. The high similarity was also found in 1 kb promoter regions of human, mouse and rat SPATA4 gene. The similarities of the sequences upstream of SPATA4 promoter also have a high proportion. The results of searching SymAtlas (http://symatlas.gnf.org/SymAtlas/) showed that human SPATA4 has a high expression in testis, especially in testis interstitial, leydig cell, seminiferous tubule and germ cell. Mouse SPATA4 was observed exclusively in adult mouse testis and almost no signal was detected in other tissues. The pI values of the protein are negative, ranging from 9.44 to 10.15. The subcellular location of the protein is usually in the nucleus. And the signal peptide possibilities for SPATA4 are always zero. Using the SNPs data in NCBI, we found 33 SNPs in human SPATA4 gene genomic DNA region, with the distribution of 29 SNPs in the introns. CpG island searching gives the data about CpG island, which shows that the regions of the CpG island have a high similarity with each other, though the length of the CpG island is different from each other.This research is a fundamental work in the fields of the bioinformational analysis, and also put forward a new way for the bioinformatic analysis of other genes.

Content Analysis-based Adaptive Filtering in The Compressed Satellite Images (위성영상에서의 적응적 압축잡음 제거 알고리즘)

  • Choi, Tae-Hyeon;Ji, Jeong-Min;Park, Joon-Hoon;Choi, Myung-Jin;Lee, Sang-Keun
    • Journal of the Institute of Electronics Engineers of Korea SP
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    • v.48 no.5
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    • pp.84-95
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    • 2011
  • In this paper, we present a deblocking algorithm that removes grid and staircase noises, which are called "blocking artifacts", occurred in the compressed satellite images. Particularly, the given satellite images are compressed with equal quantization coefficients in row according to region complexity, and more complicated regions are compressed more. However, this approach has a problem that relatively less complicated regions within the same row of complicated regions have blocking artifacts. Removing these artifacts with a general deblocking algorithm can blur complex and undesired regions as well. Additionally, the general filter lacks in preserving the curved edges. Therefore, the proposed algorithm presents an adaptive filtering scheme for removing blocking artifacts while preserving the image details including curved edges using the given quantization step size and content analysis. Particularly, WLFPCA (weighted lowpass filter using principle component analysis) is employed to reduce the artifacts around edges. Experimental results showed that the proposed method outperforms SA-DCT in terms of subjective image quality.

A GIS-based Analysis on Geometric Distortions in Historical Maps: A Preliminary Case Study of Daedongyeojido ('The Great Map of Korea') (고지도의 왜곡 양상에 대한 GIS-기반 연구: 대동여지도를 사례로 한 시론적 분석)

  • Lee, Sang-Il;Cho, Daeheon
    • Journal of the Korean Geographical Society
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    • v.49 no.3
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    • pp.438-455
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    • 2014
  • This study aims at providing a set of viable answers regarding the projection and cartographic scale of Daedongyeojido through a GIS-based planimetric accuracy analysis. Both global and local analyses were undertaken in the use of an analytical tool, MapAnalyst. The main results from the global analysis are threefold. First, the overall cartographic scale turned out to be between 1:158,000 and 1:162,000. Second, the rotation angles were between $2^{\circ}$ and $3^{\circ}$, and the equidistant cylindrical projection reported the smallest value. Third, in terms of position accuracy, the conformal cylindrical projection showed a best fit to the map. A local analysis was undertaken for the conformal cylindrical and equidistant azimuthal projections and its main results are threefold. First, the largest distortions in terms of the displacement vectors and distortion grid were found in the northern borderlands. Second, from the isoline maps of scales, it was acknowledged that local scales between 1:170,000 and 1:175,000 were found around the middle part of the Korean peninsula centered on Seoul. As away from the region to the north-south direction, increasingly larger scales were distributed, while the smallest ones were found in the western and eastern edges of the peninsula. Third, from the isoline maps of rotation, it was known that areas west of a northernmost city (Junggangjin) were substantially rotated to the west, while ones east of it to the east. For a more sophisticated analysis, some need to be done to have a larger set of control points, a better way of postulating the map projection, and a more advanced set of techniques for a local analysis.

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Performance Evaluation of Inter-Sector Collaborative PF Schedulers for Multi-User MIMO Transmission Using Zero Forcing (영점 강제 다중 사용자 MIMO 전송 시 셀 간 정보 교환을 활용한 협력적 PF 스케줄러의 성능 평가)

  • Lee, Ji-Won;Sung, Won-Jin
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.47 no.2
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    • pp.40-46
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    • 2010
  • Multi-user MIMO (Multiple-Input Multiple-Output) systems require collaborative PF schedulers to improve the performance of the log sum of average transmission rates. While the performance of single cell based conventional PF schedulers has been evaluated over various channel conditions, scheduling algorithms by multiple base stations which select multiple users over a given time frame and their performance require further investigations. In this paper, we apply a collaborative PF scheduler to the distributed multi-user MIMO system, which assigns radio resources to multiple users by exchanging user channel information from base stations located in three adjacent sectors. We further evaluate its performance in terms of the log sum of average transmission rates. The performance is compared to that of the full-search collaborative PF scheduler which searches over all possible combinations of user groups, and that of a parallel PF scheduler that determines users without channel information exchange among base stations. We show the log sum of average transmission rates of the collaborative PF scheduler outperforms that of the parallel PF scheduler in low percentile region. In addition, the collaborative PF scheduler exhibits a negligible performance degradation when compared to the full-search collaborative PF scheduler while a significant reduction of the computational complexity is achievable at the same time.

In Vitro and In Vivo Agreement of Microwave Radio-Thermometer and Needle Probe Thermometer During Therapeutic Ultrasound (초음파 가열 시 In Vitro 및 In Vivo에서 Microwave Radio-Thermometer와 탐침온도계의 일치도)

  • Lee, Su-Young;Cho, Sang-Hyun;Yi, Chung-Hwi;Kim, Jong-Man
    • Physical Therapy Korea
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    • v.10 no.1
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    • pp.15-27
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    • 2003
  • Therapeutic ultrasound is commonly applied for deep heating in physical therapy setting. However, it is difficult to determine the exact application dosage and to confirm the immediate heating effect. Microwave Radio-Thermometer (MRT) can measure the temperature by the electromagnetic energy in the microwave region of the object that emits above absolute zero temperature. MRT was used for early diagnosis of breast cancer since it was not harmful, non-invasive, and non-ionizing to the human body. The purposes of this study were to investigate how accurately 1.1 GHz RTM (RES Ltd. Russia) measures the change of average temperature in the tissue, and to determine the depth of temperature change measurement. Therapeutic ultrasound was applied (continuous wave for 5 minutes, 1 MHz, intensity of 1.5 $W/cm^2$ [in vitro] and 1.0 $W/cm^2$ [in vivo]) in four different conditions: (1) 30 cases of in vitro specimen of pork, (2) 30 cases of in vitro specimen of pork ankle joint, (3) 10 cases of in vivo canine thigh, and (4) 30 cases of in vivo human body. Intraclass Correlation Coeffients (ICC[3,1]) between average needle probe thermometer below surface and MRT temperature was revealed as followed: (1) Before ultrasound application ICCs ranges above .8 in specimen of pork (15 mm underneath the skin) and above .82 in specimen of pork ankle joint (10~30 mm underneath the skin). (2) After ultrasound application ICCs ranges above .7 in both specimens of pork and pork ankle joint. (3) Before ultrasound application ICCs ranges above .8 in canine thigh (20 mm underneath the skin). (4) After ultrasound application ICCs ranges above .82 in canine thigh. The temperature of the human body increased significantly with the mean of $15^{\circ}C$ in muscle tissue and with the mean of $3.5^{\circ}C$ in joint (p<.00). It was revealed that the average depth of temperature measurement of the tissue by MRT was in between 10 and 35 mm, and determined that the proper temperature measurement band was $36.5{\sim}37.0^{\circ}C$.

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Analysis of Arrival Information and Status of the Patients in Emergency Department (응급의료센터 환자의 내원 정보 및 실태 분석)

  • Lee, Sam-Beom;Do, Byung-Soo
    • Journal of Yeungnam Medical Science
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    • v.16 no.2
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    • pp.277-282
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    • 1999
  • Background: For effective and systematic management of patients in the emergency department(ED), the data on patient arrival and status in ED of Yeungnam University Hospital were evaluated. Materials and Methods: During the seven days from Apr. 1 to Apr. 7, 1998, the general patient information such as onset time and place, factors associated with transportation, causes of admission, cared department and patient disposition were recorded. Results: Total of 464 patients visited the ED during the seven days, and the mean number of patients per day was 66.3. Male to female ratio was 1:0.71. Daily staying patients were 17.3, and 83.6 patients were cared totally each day. The methods of transportation and distribution of patients according to region and event were as follows: visit by walk(57.3%). transportation by car(58.0%), place of event in residence(85.3%), regional distribution in Taegu(81.5%), and direct visit(97.4%). Cause of admission due to diseases was 74.6%. The percentages of departments which cared the patients were internal medicine 26.6%, pediatrics 16.8%, orthopedics 8.6%, neurology 8.2%, neurosurgery 7.8% and other department including emergency medicine 8.2%, respectively. Patient dispositions were admission 38.4%, discharge 61.0% and death on arrival(DOA) 0.6%, but referred patient-to-another-hospital was zero. Conclusion: Improvements in several aspects of ED's caring system such as "fast tracking" system and reinforcement of disease and trauma caring system, would be helpful for effective management of emergency patients.

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Computation of Tides in the Northeast Asian Sea by Blending the Topex/Poseidon Altimeter Data (Topex/Poseidon 고도계 자료를 이용한 북동 아시아 해역의 조석 산정)

  • Kim, Chang-Shik;Matsumoto, Koji;Ooe, Masatsugu;Lee, Jong-Chan
    • The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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    • v.6 no.1
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    • pp.1-12
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    • 2001
  • Tidal computations of $M_2,\;S_2,\; K_1$ and $O_1$ constituents in the northeast Asian sea are presented by blending the Topex/Poseidon (T/P) altimeter data into a hydrodynamic model with $5'{\times}5'$ resolution. A series of sensitivity experiments on a weighting factor, which is the control parameter in the blending method, are carried out using $M_2$ constituent. The weighting factor is set to be in inverse proportion to the square root of water depth to reduce noises which could occur in data-assimilative model by blending T/P data. Model results obtained by blending the T/P-derived $M_2,\;S_2,\; K_1$ and $O_1$ constituents simultaneously are compared with all T/P-track tidal data; Average values of amplitude and phase errors are close to zero. Standard deviations of amplitude and phase errors are approximately 2 cm and less than 10 degrees respectively. The data-assimilative model results show a quite good agreement with T/P-derived tidal data, particularly in shallow water region (h<250m). In deep water regions, T/P-derived tidal data show unreasonable spatial variations in amplitude and phase. The data-assimilative model results differ from T/P-derived data, but are improved to show reasonable spatial variations in amplitude and phase. In addition, the T/P-blended model results are in good agreement with coastal tide gauge data which are not blended into the model.

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Video Compression using Characteristics of Wavelet Coefficients (웨이브렛 계수의 특성을 이용한 비디오 영상 압축)

  • 문종현;방만원
    • Journal of Broadcast Engineering
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    • v.7 no.1
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    • pp.45-54
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    • 2002
  • This paper proposes a video compression algorithm using characteristics of wavelet coefficients. The proposed algorithm can provide lowed bit rate and faster running time while guaranteeing the reconstructed image qualify by the human virtual system. In this approach, each video sequence is decomposed into a pyramid structure of subimages with various resolution to use multiresolution capability of discrete wavelet transform. Then similarities between two neighboring frames are obtained from a low-frequency subband which Includes an important information of an image and motion informations are extracted from the similarity criteria. Four legion selection filters are designed according to the similarity criteria and compression processes are carried out by encoding the coefficients In preservation legions and replacement regions of high-frequency subbands. Region selection filters classify the high-frequency subbands Into preservation regions and replacement regions based on the similarity criteria and the coefficients In replacement regions are replaced by that of a reference frame or reduced to zero according to block-based similarities between a reference frame and successive frames. Encoding is carried out by quantizing and arithmetic encoding the wavelet coefficients in preservation regions and replacement regions separately. A reference frame is updated at the bottom point If the curve of similarity rates looks like concave pattern. Simulation results show that the proposed algorithm provides high compression ratio with proper Image quality. It also outperforms the previous Milton's algorithm in an Image quality, compression ratio and running time, leading to compression ratio less than 0.2bpp. PSNR of 32 dB and running tome of 10ms for a standard video image of size 352${\times}$240 pixels.

Study of Hydrotrope Action and Liquid Crystal Behavior of Concentrated Liquid Detergents (농축세정제의 액정 상거동과 하이드로트로프 작용에 대한 연구)

  • Chi, Gyeong-Yup
    • Applied Chemistry for Engineering
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    • v.27 no.5
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    • pp.516-520
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    • 2016
  • Concentrated liquid detergents have 2~3 times higher surfactant contents [35~45% (w/w)] compared to those of normal type detergents. In general, a single surfactant forms a lyotropic liquid crystal (LC) phase when the concentration is in the region of 30~60% (w/w). Whereas the concentrated liquid detergent at about 40% (w/w) concentration in a mixed surfactant system shows an opaque appearance of gel or LC. In order to meet consumer needs and preference for product appearance, we applied hydrotropes and various surfactants systems in concentrated liquid detergents to obtain an opaque gel-phase and also a clear transparent phase at even below zero $^{\circ}C$ temperature. The more effective hydrotropes for making concentrated liquid detergents are 1,6-hexanediol, adipic acid and dipropylene glycol (DPG) which have two hydrophilic groups in both terminated positions. In order to prepare an excellent concentrated liquid detergent, good hydrotropes alongside secondary type surfactants like LAS and SAS were used. The formation of LC phase of concentrated liquid detergents at about 40% (w/w) concentration could be prevented by the use of both hydrotropes and secondary type surfactants. The result indicate that concentrated detergents having excellent low temperature stability and controlled viscosity can be prepared.

Shear Strength Characteristics of Weathered Granite Soil below the Freezing Point (동결온도 조건에서의 화강풍화토 전단강도 특성에 관한 연구)

  • Lee, Joonyong;Choi, Changho
    • Journal of the Korean GEO-environmental Society
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    • v.14 no.7
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    • pp.19-29
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    • 2013
  • Analysis via classical soil mechanics theory is either ineffective or inappropriate for fully describing stress distribution or failure conditions in cold regions, since mechanical properties of soils in cold regions are different from those reported in the classical soil mechanics theory. Therefore, collecting and analyzing technical data, and systematic and specialized research for cold regions are required for design and construction of the structure in cold regions. Freezing and thawing repeat in active layer of permafrost region, and a loading condition affecting the structure changes. Therefore, the reliable analysis of mechanical properties of frozen soils according to various conditions is prerequisite for design and construction of the structure in cold regions, since mechanical properties of frozen soils are sensitive to temperature condition, water content, grain size, relative density, and loading rate. In this research, the direct shear apparatus which operates at 30 degrees below zero and large-scaled low temperature chamber are used for evaluating shear strength characteristics of frozen soils. Weathered granite soil is used to analyzed the shear strength characteristics with varying freezing temperature condition, vertical confining pressure, relative density, and water content. This research shows that the shear strength of weathered granite soil is sensitively affected by various conditions such as freezing temperature conditions, normal stresses, relative densities, and water contents.