• Title/Summary/Keyword: XML DBMS

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A Protein Structure Comparison System based on PSAML (PSAML을 이용한 단백질 구조 비고 시스템)

  • Kim Jin-Hong;Ahn Geon-Tae;Byun Sang-Hee;Lee Su-Hyun;Lee Myung-Joon
    • Journal of KIISE:Computing Practices and Letters
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    • v.11 no.2
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    • pp.133-148
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    • 2005
  • Since understanding of similarities and differences among protein structures is very important for the study of the relationship between structure and function, many protein structure comparison systems have been developed. Hut, unfortunately, these systems introduce their own protein data derived from the PDB(Protein Data Bank), which are needed in their algorithms for comparing protein structures. In addition, according to the rapid increase in the size of PDB, these systems require much more computation to search for common substructures in their databases. In this paper, we introduce a protein structure comparison system named WS4E(A Web-Based Searching Substructures of Secondary Structure Elements) based on a PSAML database which stores PSAML documents using the eXist open XML DBMS. PSAML(Protein Structure Abstraction Markup Language) is an XML representation of protein data, describing a protein structure as the secondary structures of the protein and their relationships. Using the PSAML database, the WS4E provides web services searching for common substructures among proteins represented in PSAML. In addition, to reduce the number of candidate protein structures to be compared in the PSAML database, we used topology strings which contain the spatial information of secondary structures in a protein.

Development of an Integrated DB Management System for GIS-Based Client/Server Data Sharing in Climate and Environment Fields (GIS기반의 기후·환경 분야 자료 공유를 위한 Client/Server 방식의 통합DB 관리시스템 개발)

  • Choi, Yong-Kuk;Kim, Kye-Hyun;Lee, Chol-Young
    • Journal of the Korean Association of Geographic Information Studies
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    • v.17 no.2
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    • pp.32-43
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    • 2014
  • To identify major causes of the global environment changes arising from extreme and unusual weather patterns occurring these days, and to foresee future environmental changes, it is highly important to shed light on the correlation between climate changes and global environment system. To investigate the correlation between climate changes and global environment system, it calls for establishing an integrated climate-environment DB for analyzing comparatively the data on climatic changes and global environment system. In the preceding studies, we researched an XML-based integrated climate-environment DB and developed a management system for the DB. However, the existing integrated climate-environment DB, designed and installed only for individual PCs, does not allow multiple users 'simultaneous access. Accordingly, it fails to systematically update and sharing data which is being generated continuingly. Hence, this study aims to develop an easy-to-use GIS-based integrated DB management system by improving the existing integrated climate-environment DB through the adoption of the client/server model. For this, this study collected and analyzed climate and environment data prior to designing and building a DBMS-based integrated DB. In addition, in order for multidisciplinary researchers to easily get access and apply the integrated DB, this study designed and developed a GIS-based integrated DB management system using a client/server model which facilitates connections with multiple PCs. The GIS-based integrated climate-environment DB management system makes it easier to efficiently manage and locate scattered climate-environment data. It is also expected that the DB system will bring the effects in saving time and cost by avoiding the overlapping generation of data in the areas of integrated climate-environment research.

Efficient Publishing Spatial Information as GML for Interoperability of Heterogeneous Spatial Database Systems (이질적인 공간정보시스템의 상호 운용성을 위한 효과적인 지리데이터의 GML 사상)

  • 정원일;배해영
    • Journal of Korea Multimedia Society
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    • v.7 no.1
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    • pp.12-26
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    • 2004
  • In the past, geographic data is constructed and serviced through independent formats of its own according to each GIS(Geographic Information System). Recently the provision of interoperability in GIS is important to efficiently apply the various geographic data between conventional GIS's. Whereupon OGC(Open GIS Consortium) proposed GML(Geography Markup Language) to offer the interoperability between heterogeneous GISs in distributed environments. The GML is an XML encoding for the transport and storage of geographic information, including both the spatial and non-spatial properties of geographic features. Also, the GML includes Web Map Server Implementation Specification to service the GML documents. Accordingly the prototype to provide the reciprocal interchange of geographic information between conventional GIS's and GML documents is widely studied. In this paper, we propose a mapping method of geographic in formation between spatial database and GML for the prototype to support the interoperability between heterogeneous geographic information. For this method, firstly the scheme of converting geographic in Formation of the conventional spatial database into the GML document according to the GML specification is explained, and secondly the scheme to transform geographic information of GML documents to geographic data of spatial database is showed. Consequently, the proposed method is applicable to the framework for integrated geographic information services based on Web by making an offer the interoperability between already built geographic information of conventional GIS's using a mapping method of geographic information between spatial database and GML.

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A Development of UDDI 3.0 Registry based on Relational DBMS (관계 DBMS에 기반한 UDDI 3.0 레지스트리의 개발)

  • 유수진;이경하;이규철
    • The Journal of Society for e-Business Studies
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    • v.9 no.2
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    • pp.163-181
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    • 2004
  • Recently, it is to increase rapidly in people who do a private business through Web service. So, many companies have been developing part of businesses using Web Services. The greatest interest of companies developing Web Services was that users were easily discovering and using information on theirs. So, companies have been taking interest in a standard that supports registrations of information on Web service and discoveries of a registered Web services. Therefore UDDI 3.0 standard of the registry for Web service standardized by OASIS is in the spotlight. But, because of the complexity of it, there are no implementations developed in the inside of the country yet. And a development activity of it is faint. In outside of the country, IBM, Microsoft and SAP has developed it, but they do not perfectly support a standard of UDDI 3.0. This Paper shows the development of the Registry System which supports perfectly a standard of UDDI 3.0.

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MPEG-7 Scheme Based Embedded Multimedia Database Management System in Mobile Environment (모바일 환경에서 MPEG-7 스킴 기반의 내장형 멀티미디어 데이터베이스 관리 시스템)

  • Ahn, Byeong-Tae;Kang, Young-Sin
    • Journal of the Korea Society of Computer and Information
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    • v.12 no.2 s.46
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    • pp.9-19
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    • 2007
  • In recent, development of wireless internet technology gradually has increased multimedia application in mobile device. Specially, application of grand capacity multimedia contents has increased in mobile environment gradually. MPEG-7 can search multimedia data using various type. But in restricted grand capacity of multimedia, MPEG-7 is used to be limited in desktop computer system mostly. Therefore, management of grand capacity multimedia data has become very important researching topic in mobile environment, and so embedded DBMS based on MPEG-7 for multimedia data management in client-server environment is needed. The system supports restricted hardware resource for multimedia application in mobile device. In this paper, we propose a method for MPEG-7 data clustering that included MPEG-7 data property. On the base of the clustering result, we also develop the embedded multimedia database management system based on MPEG-7 scheme(EMDS:MPEG-7 Scheme Based Embedded Multimedia Database Management System) in mobile device such as PDA.

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Digital Humanities, and Applications of the "Successful Exam Passers List" (과거 합격자 시맨틱 데이터베이스를 활용한 디지털 인문학 연구)

  • LEE, JAE OK
    • (The)Study of the Eastern Classic
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    • no.70
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    • pp.303-345
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    • 2018
  • In this article, how the Bangmok(榜目) documents, which are essentially lists of successful passers for the civil competitive examination system of the $Chos{\breve{o}}n$ dynasty, when rendered into digitalized formats, could serve as source of information, which would not only lets us know the $Chos{\breve{o}}n$ individuals' social backgrounds and bloodlines but also enables us to understand the intricate nature that the Yangban network had, will be discussed. In digitalized humanity studies, the Bangmok materials, literally a list of leading elites of the $Chos{\breve{o}}n$ period, constitute a very interesting and important source of information. Based upon these materials, we can see how the society -as well as the Yangban community- was like. Currently, all data inside these Bangmok lists are rendered in XML(eXtensible Makrup Language) format and are being served through DBMS(Database Management System), so anyone who would want to examine the statistics could freely do so. Also, by connecting the data in these Bangmok materials with data from genealogy records, we could identify an individual's marital relationship, home town, and political affiliation, and therefore create a complex narrative that would be effective in describing that individual's life in particular. This is a graphic database, which shows-when Bangmok data is punched in-successful passers as individual nodes, and displays blood and marital relations in a very visible way. Clicking upon the nodes would provide you with access to all kinds of relationships formed among more than 90 thousand successful passers, and even the overall marital network, once the genealogical data is input. In Korea, since 2005 and through now, the task of digitalizing data from the Civil exam Bangmok(Mun-gwa Bangmok), Military exam Bangmok (Mu-gwa Bangmok), the "Sa-ma" Bangmok and "Jab-gwa" Bangmok materials, has been completed. They can be accessed through a website(http://people.aks.ac.kr/index.aks) which has information on numerous famous past Korean individuals. With this kind of source of information, we are now able to extract professional Jung-in figures from these lists. However, meaningful and practical studies using this data are yet to be announced. This article would like to remind everyone that this information should be used as a window through which we could see not only the lives of individuals, but also the society.