• 제목/요약/키워드: Weighted bootstrap

검색결과 13건 처리시간 0.017초

경주 방폐장의 불균질 배경 단열의 정량화 (Quantification of Heterogenous Background Fractures in Bedrocks of Gyeongju LILW Disposal Site)

  • 조현진;정재열;임두현;함세영
    • 지질공학
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    • 제27권4호
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    • pp.463-474
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    • 2017
  • 본 연구는 화강암과 퇴적암지역에 위치하는 중저준위 경주방폐장의 불균질 배경 단열의 방향성, 밀도, 크기를 정량적으로 분석하였다. 불균질 배경 단열을 분석하기 위하여 지표지질조사, 전기비저항탐사, 공내 초음파주사검층 자료를 이용하였다. 연구지역 배경 단열의 정량화 분석을 위해서 부트스트랩 방법을 적용하였으며, 이에 의하여 위치에 따라 다양한 방향성을 가지는 단열들의 이방성을 합리적으로 특성화할 수 있었다. 단열 밀도는 단층 연장성을 고려한 단층거리의 역산값 및 전기비저항 평균값과 상관성을 보였으며, 평균 부피 단열 밀도($P_{32}$)는 $3.1m^2/m^3$로 나타났다. 중저준위 방폐물 처분 지하 사일로에서 측정된 단열과 지표 단층 정보에 의하면, 단열크기는 단열의 프랙탈 성질에 기초한 멱함수 법칙 분포에 따르며, 배경 단열의 반경은 1.5~86 m로 산정되었다.

Metagenomic Approach to Identifying Foodborne Pathogens on Chinese Cabbage

  • Kim, Daeho;Hong, Sanghyun;Kim, You-Tae;Ryu, Sangryeol;Kim, Hyeun Bum;Lee, Ju-Hoon
    • Journal of Microbiology and Biotechnology
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    • 제28권2호
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    • pp.227-235
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    • 2018
  • Foodborne illness represents a major threat to public health and is frequently attributed to pathogenic microorganisms on fresh produce. Recurrent outbreaks often come from vegetables that are grown close to or within the ground. Therefore, the first step to understanding the public health risk of microorganisms on fresh vegetables is to identify and describe microbial communities. We investigated the phyllospheres on Chinese cabbage (Brassica rapa subsp. pekinensis, N = 54). 16S rRNA gene amplicon sequencing targeting the V5-V6 region of 16S rRNA genes was conducted by employing the Illumina MiSeq system. Sequence quality was assessed, and phylogenetic assessments were performed using the RDP classifier implemented in QIIME with a bootstrap cutoff of 80%. Principal coordinate analysis was performed using a weighted Fast UniFrac matrix. The average number of sequence reads generated per sample was 34,584. At the phylum level, bacterial communities were composed primarily of Proteobacteria and Bacteroidetes. The most abundant genera on Chinese cabbages were Chryseobacterium, Aurantimonadaceae_g, Sphingomonas, and Pseudomonas. Diverse potential pathogens, such as Pantoea, Erwinia, Klebsiella, Yersinia, Bacillus, Staphylococcus, Salmonella, and Clostridium were also detected from the samples. Although further epidemiological studies will be required to determine whether the detected potential pathogens are associated with foodborne illness, our results imply that a metagenomic approach can be used to detect pathogenic bacteria on fresh vegetables.

Analysis of Microbiota in Bellflower Root, Platycodon grandiflorum, Obtained from South Korea

  • Kim, Daeho;Hong, Sanghyun;Na, Hongjun;Chun, Jihwan;Guevarra, Robin B.;Kim, You-Tae;Ryu, Sangryeol;Kim, Hyeun Bum;Lee, Ju-Hoon
    • Journal of Microbiology and Biotechnology
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    • 제28권4호
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    • pp.551-560
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    • 2018
  • Bellflower root (Platycodon grandiflorum), which belongs to the Campanulaceae family, is a perennial grass that grows naturally in Korea, northeastern China, and Japan. Bellflower is widely consumed as both food and medicine owing to its high nutritional value and potential therapeutic effects. Since foodborne disease outbreaks often come from vegetables, understanding the public health risk of microorganisms on fresh vegetables is pivotal to predict and prevent foodborne disease outbreaks. We investigated the microbial communities on the bellflower root (n = 10). 16S rRNA gene amplicon sequencing targeting the V6-V9 regions of 16S rRNA genes was conducted via the 454-Titanium platform. The sequence quality was checked and phylogenetic assessments were performed using the RDP classifier implemented in QIIME with a bootstrap cutoff of 80%. Principal coordinate analysis was performed using the weighted Fast UniFrac distance. The average number of sequence reads generated per sample was 67,192 sequences. At the phylum level, bacterial communities from the bellflower root were composed primarily of Proteobacteria, Firmicutes, and Actinobacteria in March and September samples. Genera Serratia, Pseudomonas, and Pantoea comprised more than 54% of the total bellflower root bacteria. Principal coordinate analysis plots demonstrated that the microbial community of bellflower root in March samples was different from those in September samples. Potential pathogenic genera, such as Pantoea, were detected in bellflower root samples. Even though further studies will be required to determine if these species are associated with foodborne illness, our results indicate that the 16S rRNA gene-based sequencing approach can be used to detect pathogenic bacteria on fresh vegetables.