• The Korean Journal of Mycology
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• v.38 no.1
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• pp.34-39
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• 2010

We have attempted to verify 30 strains of Hypsizigus marmoreus from various mushroom stocks in Korea using random amplified polymorphic DNA (RAPD) methodology. Chromosomal DNAs of them were extracted and subjected to PCR analyses with 3 random primers. Each PCR produced approximately 30 distinct PCR bands with the size from 200 bp to 3000 bp. A dendrogram was acquired using the unweighted pair-group method with arithmetic average (UPGMA) clustering methodology on the basis of the DNA band pattern. The analysis revealed that 30 strains of H. marmoreus were clustered into two distinct clusters. Cluster 1 contained 3 subgroups while the cluster 2 consisted of rather diverse strains. Interestingly, Hm3-10, a wild strain collected from Deog-Yu mountain, was not included in either clusters, indicative of uniqueness of this strain. We nextly attempted to develop strain-specific DNA markers to verify a specific strain. A unique band in the RAPD gel lane of Hm0-4 was extracted and its sequence was determined. PCR with a primer set from the determined sequence revealed that the primer set gave a 250 bp DNA band only for Hm0-4, indicating that this approach works well for the strain-specific identification of H. marmoreus.

• Korean Journal of Environment and Ecology
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• v.21 no.5
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• pp.432-441
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• 2007

This study was done to classify the Quercus forests, along with their interpretations of environmental conditions, located in the lower montane zones of Mt. Bakdal, Gyemyeong, Boryeon, Worak, Cheondeung, Joryeong, Gugmang, Buyong, Duta, Malloe, Midong, Gamak, Sirubong, Sipjabong and Yongsanbong in Chungbuk Province, According to the methodology of the Z.-M. schools of phytosociology, the Quercus forests were classified into three communities and two subcommunities A. Quercus variabilis community, A-1. Quercus acutissima subcommunity, A-2. Typical subcommunity; B. Quercus mongolica community; C. Quercus dentata community. These vegetation units were arranged by human interferences and a gradient of environmental complex such as altitudes, and also were corresponded relatively well with the result of cluster analysis(UPGMA), based on the dominance of component species.

• The Korean Journal of Mycology
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• v.42 no.2
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• pp.159-164
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• 2014

For development of a method for differentiation of Pleurotus eryngii cultivars, simple sequence repeats (SSR) from whole genomic DNA sequence analysis was used for genotyping and two multiplex-SSR primer sets were developed. These SSR primer sets were employed to distinguish 12 cultivars and strains. Five polymorphic markers were selected based on the genotyping results. PCR using each primer produced one to four distinct bands ranging in size from 200 to 300 bp. Polymorphism information content (PIC) values of the five markers were in the range of 0.6627 to 0.6848 with an average of 0.6775. Unweighted pairgroup method with arithmetic mean clustering analysis based on genetic distances using five SSR markers classified 12 cultivars into two clusters. Cluster I and II were comprised of four and eight cultivars, respectively. Two multiplex sets, Multi-1 (SSR312 and SSR366) and Multi-2 (SSR178 and SSR277) completely discriminated 12 cultivars and strains with 21 alleles and a PIC value of 0.9090. These results might be useful in providing an efficient method for the identification of P. eryngii cultivars with separate PCR reactions.

• Journal of Food Hygiene and Safety
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• v.13 no.2
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• pp.149-154
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• 1998

The authors attempted utilization of fatty acid composition of vibrios as a tool for identification of the strains. Fatty acid of 49 strains of Vibrio cholerae non-O1, V. cholerae O1, V mimicus, V vulinificus and V parahaemolyticus was analyzed by gas-liquid chromatography column. According to the statistical analysis of the fatty acid data, the relationship between the Vibrio species and serotypes of the strains was discussed. Forty one kinds of fatty acid were detected from the tested strains and 35 kinds of fatty acids among the detected fatty acids were significant factors to identify the vibrios. The predominant fatty acids were 16:0, 16:1 cis 9, 18:1 trans 9/6/cis 11 and 15:0 iso 2OH/16:1 cis 9 as above about 20% in total. Fatty acid compositions of the Vibrio species were an important factor in identifying their subspecies either predominant fatty acids or minor ones. According to the analysed results by a conventional statistical processing method (UPGMA) and prepared dendrogram, V cholerae non-01 had more closer relationship with V. mimicus compared with V. cholerae 01. Moreover, the distribution of hydroxy acid was a significant factor for identifying V cholerae subspecies. Comprising all the 10 serotypes detected from V. cholerae non-01 examined such as O2, O5, O8, O10, O14, O27, O37, O39, O45 and O69, we could group them into seven subspecies by cluster analysis with the similarity value of fatty acid composition as above 92%. It means that there is a significant relationship between serotypes and fatty acid composition of V. cholerae. These results indicated that numerical analysis of fatty acid composition data of V cholerae non-01 could classifY them into subspecies, and also which may provide a useful epidemiologic information or a basis for further analysis such as PCR and DNA probe analysis.

• Journal of Forest and Environmental Science
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• v.28 no.4
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• pp.242-246
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• 2012

The variation in random amplified polymorphic DNA (RAPD) markers were examined for Xanthoceras sorbifolium Bunge seeds from three plantations (Inner Mongolia [IM], Liaoning [LN], and Shandong [SD] province) in China. Mean genetic variation was measured by polymorphism percentage (42.10%) and expected heterozygosity (He=1.27). Among three populations, Shandong showed the highest values both in polymorphism percentage and heterozygosity (p=57.89; Ho=1.58; and He=1.37). Total genetic diversity value, based on the total loci, was estimated as total genetic diversity of the species (Ht)=0.27 and mean within-population genetic diversity (Hs)=0.16. UPGMA cluster analysis showed the genetic closeness between Inner Mongolia and Liaoning population, but that Shandong seems to be the separate population.

• Mycobiology
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• v.29 no.2
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• pp.85-89
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• 2001

URP primers of 20 mer derived from repetitive sequence of rice were used to assess genetic variation of oyster mushroom consisting of 10 cultivars of Pleurotus ostreatus, two cultivars of P. florida and two cultivars of P. sajor-caju which were registered in Korea. URP2F and URP38F primers produced cultivar-specific PCR polymorphic bands in the Pleurotus species. UPGMA cluster analysis using the URP-PCR data showed that 14 Pleurotus cultivars are genetically clustered into large three groups. The URP-PCR data provided important information for more efficient breeding strategies of Pleurotus cultivars.

• Proceedings of the Korean Society of Plant Pathology Conference
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• 2003.10a
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• pp.116.1-116
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• 2003

Fusarium oxysporum f. sp. fragariae is a fungal pathogen causing wilt disease on strawberry. The RAPD and RFLP of IGS region of rDNA were used to identify genetic affinity among 22 isolates of F. oxysporum f. sp. fagariae obtained from various location of major strawberry cultivating areas in Korea. Approximately 2.6kb DNA fragment was amplified with primer CNS1 and CNL12, and polymorphisms were observed with Avail and HinfI. A dendrogram was constructed using the UPGMA for cluster analysis. Eight distinct groups were clustered based on the banding pattern obtained from RAPD and rDNA RFLP. There was high level genetic variation among Korean isolates of Fusarium of sporum f. sp. fragariae.

• Journal of the Korean Institute of Landscape Architecture
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• v.27 no.2
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• pp.58-68
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• 1999

This study was carried out to verify the distribution patterns of Salix gracilistyla and Phragmites japonica communities known as obligatory riparian species according to physical factors such as micro-landforms, substrates, etc., at Soo-ip stream corridor. Firstly four vegetation types - Salix gracilistyla dominant type, Phragmites japonica dominant type, mixed type of two species, and mixed type of two species to other species, were classified by cluster analysis based on UPGMA-Euclidean distance. Also these vegetation types showed many different distribution patterns in response to the longitudinal and lateral view along the stream corridor and substrate composition. Salix gracilistyla was major component of dominant vegetation types developed at attack point of bending reach and on substrates composed of rock fragments, but contrastly Phragmites japonica was most important component of dominant vegetation types at point bar of bending reach and floodplain, and on substrates composed of soil materials. Secondly the species and environment biplot form CCA strongly supported the vegetation types divided by classification. Namely Salix gracilistyla was closely correlated with rock fragments and steep slope, which is resistant to physical action even though located near running water. But Phragmites japonica showed a high correlation with soil particles sedimented at floodplain by divergent flow.

• Proceedings of the Plant Resources Society of Korea Conference
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• 2020.08a
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• pp.36-36
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• 2020

Symplocos Jacq. including about 350 species is the sole isolated genus of the family Symplocaceae. Despite poorly documented species delimitation and unresolved taxonomic nomenclature four species of Symplocos (S. coreana, S purnifolia, S sawafutagi, and S. tanakana) have been described in Korea. In this study, we carried the comparative wood anatomy of all the four species of Korean Symplocos to understand the wood anatomical variations within these four species. The result of this study indicated that Korean Symplocos are comparatively indistinguishable in terms of their qualitative wood features except for exclusively uniseriate rays present in S. purnifolia instead of uni- to- multiseriate in other three species. However, discrepancies are observed in quantitative wood variables such as vessel density, vessel size, and ray density. The vessel density of S. purnifolia (highest among the four species) is more than two times higher than the S. sawafutagi (lowest among the four species) and S. tanakana. On the other hand, vessel size is likewise reverse to the vessel number relationships i. e. vessel circumference and diameter in both planes of S. sawafutagi and S. tanakana is almost twice a larger than S. purnifolia. Interestingly, S. coreana remains in between of these two groups in terms of vessel features and closer to S. purnifolia in terms of ray density. The cluster analysis based on the paired group (UPGMA) algorithm using the Euclidean similarity index clearly differentiates S. purnifolia from the rest of the taxa representing the first isolated clade of the tree.

• Korean Journal of Plant Resources
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• v.22 no.2
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• pp.152-158
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• 2009

We performed RAPD analysis to investigate the inter-/intraspecific relationships and regional variations of Phragmites japonica and P. communis according to the environmental change. One hundred and fourty nine genetic effective polymorphic bands between 300 bp and 1,900 bp were marked from RAPD PCR with nine oligoprimers. From the RAPD analysis by Nei-Li's genetic distance, the dissimilarity indices among the populations of Phragmites japonica were relatively low from 0.012 to 0.061, and Phragmites communis were also low from 0.033 to 0.095. It showed the close genetic relationships among the same species populations, and both species were distinctly independent with relatively high level of dissimilarity indices (0.043 - 0.132). The obvious genetic markers to distinguish two species were confirmed and those profiles were suggested. From the UPGMA phenogram by RAPD analysis, both species showed the water environment related cluster patterns by distributional regions. RAPD analysis was useful to delimit two species taxonomically and to investigate the genetic relationships among inter-/intraspecific populations.