• Asian Pacific Journal of Cancer Prevention
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• v.14 no.6
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• pp.3503-3507
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• 2013

Background: Although the majority of investigations concerned with TP53 and its protein have focused on coding regions, recently a set of studies highlighted significant roles of regulatory elements located in p53 mRNA, especially 5'UTR. The wrap53${\alpha}$ transcript is one of those that acts as a natural antisense agent, forming RNA-RNA hybrids with p53 mRNA and protecting it from degradation. Materials and Methods: In this study, we focused on the mutation status of exon $1{\alpha}$ of the WRAP53 gene (according to exon 1 of p53) in 160 breast tumor tissue samples and conducted a bioinformatics search for probable miRNA binding site in the p53/wrap53 overlapping region. Mutations were detected, using single stranded conformation polymorphism (SSCP) and sequencing. We applied the miRBase database for prediction of miRNAs which target overlapping region of p53/wrap53 transcripts. Results: Our results showed all samples to have wild type alleles in exon 1 of TP53 gene. We could detect a novel and unreported intronic mutation (IVS1+56, G>C) outside overlapping regions of p53/wrap53 genes in breast cancer tissues and also predict the presence of a binding site for miR-4732-5p in the 5'UTR of Wrap53 mRNA. Conclusions: From our findings we propose designing further studies focused on overexpression of miRNA-4732-5p and introducing different mutations in the overlapping region of wrap53 and p53 genes in order to study their effects on p53 and its ${\Delta}N$ isoform (${\Delta}$40p53) expression. The results may provide new pieces in the p53 targeting puzzle for cancer therapy.

• Progress in Medical Physics
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• v.21 no.4
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• pp.311-322
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• 2010

In proton therapy, the analysis of secondary particles is important due to delivered dose outside the target volume and thus increased potential risk for the development of secondary cancer. The purpose of this study is to analyze the influence of secondary particles from proton beams on fluence and energy deposition in the presence of inhomogeneous material by using Geant4 simulation toolkit. The inhomogeneity was modeled with the condition that the adipose tissue, bone and lung equivalent slab with thickness of 2 cm were inserted at 30% (Plateau region) and 80% (Bragg peak region) dose points of maximum dose in Bragg curve. The energy of proton was varied with 100, 130, 160 and 190 MeV for energy dependency. The results for secondary particles were presented for the fluence and deposited energy of secondary particles at inhomogeneous condition. Our study demonstrates that the fluence of secondary particles is neither influenced insertion of inhomogeneties nor the energy of initial proton, while there is a little effect by material density. The deposited energy of secondary particles has a difference in the position placed inhomogeneous materials. In the Plateau region, deposited energy of secondary particles mostly depends on the density of inserted materials. Deposited energy in the Bragg region, in otherwise, is influenced by both density of inserted material and initial energy of proton beams. Our results suggest a possibility of prediction about the distribution of secondary particles within complex heterogeneity.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.58 no.3
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• pp.283-291
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• 2013

Rice varieties with suitable flour-making quality are required to promote rice processed-food industry and boost rice consumption in Korea. 'Namil (SA)-flo1' is an advanced mutant line with floury endosperm which shows good flour-making quality under dry-milling process. Genetic analysis was carried out to localize the chromosomal region responsible for the floury endosperm of 'Namil (SA)- flo1'. By using 94 F2 progenies, which were derived from 'Namil (SA)-flo1' ${\times}$ 'Milyang 23', floury grains percentage was investigated as phenotypic data, and genotyping was conducted with 54 SSR markers. Association analysis showed that the target genetic region for floury endosperm is on middle-low region of chromosome 5. Through further association analysis with increased number of SSR markers on chromosome 5, we found that genotypic variation in RM164 explains 79.7% of the variation in floury grains percentage of F2:3 seeds. The floury endosperm locus was localized on 17.7-20.7 Mbp region of chromosome 5 and will be further analyzed for fine mapping and gene identification.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.35 no.5
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• pp.490-496
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• 2002

In order to detect the DNA heteropolymorphism of chum salmon, selected essential genes were examined in different regional chum salmons, i.e., Korean, Japanese and American by denaturing gradient gel electrophoresis (DGGE) and real time PCR methods. From the promoter regions and introns of growth hormone, mtDNA NDI region, D-loop region, IGF-I, histone H3 and MCH2 several representative primer pairs were obtained and employed for the DGGE with the PCR products from the genomic DNAs of the different regional chum salmons. mtDNA NDI, D-loop region and IGE-I genes showed marked heteropolymorphism between Korean and American chum salmons. Intron C of growth hormone also showed a heteropolymorphism between Korean and Japanese chum salmons. Whereas heteropolnnorphism of histone liH and MCH2 genes was detected among in Korean, Japanese and Asnerican chum salmons in the examined region. The real time PCR disclosed the characteristic incremental production of target DNAs dependent on the heteropolymorphic conditions of genomic DNAa of chum salmons, thus the different regional chum salmons could be grouped by the variable incremental curies. Although the DGGE and real time PCR did not produce the identical results in this study, we suggest that the DGGE and real time PCR could be used for the primary screening of the DNA heteropolymorphism of different animal genome.

• Journal of Life Science
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• v.18 no.4
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• pp.461-466
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• 2008

Transforming growth $factor-{\beta}$ ($TGF-{\beta}$)-dependent apoptosis is important in the elimination of damaged or abnormal cells from normal tissues in vivo. Gadd45b has been known to participate in $TGF-{\beta}-induced$ apoptosis by the activation of p38 kinase. In this report, we show that Gadd45b is an immediate-early response gene for $TGF-{\beta}$ during apoptosis in EpH4 cells. To elucidate the molecular mechanism of $TGF-{\beta}-induced$ Gadd45b gene expression, we cloned the 5'-flanking region of the mouse Gadd45b gene. When transfected into EpH4 cells, this 5'-flanking region conferred promoter activity and inducibility by $TGF-{\beta}$. Deletion analyses demonstrated that the minimal promoter activity was detected in the proximal region 220 bp upstream of the transcription initiation site. We also found that the proximal Gadd45b promoter is activated by $TGF-{\beta}$ through the action of Smad2, Smad3, and Smad4. Finally, we show that the expression of Gadd45b gene by $TGF-{\beta}$ is suppressed in EpRas cells in which $TGF-{\beta}$ could not induce apoptosis, suggesting that Gadd45b may be a crucial target for $TGF-{\beta}-induced$ apoptosis in EpH4 cells.

• Journal of the Korea Institute of Building Construction
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• v.22 no.2
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• pp.137-148
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• 2022

Recently, in the concrete industry, the development and commercialization of low-carbon products of ready-mixed concrete have emerged as part of the efforts to realize carbon neutrality. This study aims to investigate the current status of environmental product declaration(EPD) of ready-mixed concrete and to analyze the characteristics of carbon emissions by compressive strength, life cycle stage, and region. To this end, the related certification system requiring the calculation of carbon emissions in the concrete industry was analyzed. The target of analyzing the current status of carbon emissions was set as a product of ready-mixed concrete that acquired EPD certification based on the life cycle assessment method. In addition, the trend of carbon emissions according to each characteristic was reviewed by analyzing carbon emissions by the life cycle of ready-mixed concrete products, analyzing carbon emissions by standard, and analyzing carbon emissions by region. As a result, the carbon emissions in the pre-production stage were 99% compared to total carbon emissions., and as it increased from 18MPa to 40MPa, carbon emissions also increased. Even with the same specifications, the carbon emissions in the capital region were higher than in the southern region.

• Journal of Radiation Industry
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• v.17 no.3
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• pp.299-307
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• 2023

Given that toxic substances are diffused by the various movements of the atmosphere, it is very important to evaluate the risks associated with this phenomenon. When analyzing the behavioral characteristics of these atmospheric diffusion models, the main input data are the wind speed and wind direction among the meteorological data. In particular, it is known that a certain wind direction occurs in summer and winter in Korea under the influence of westerlies and monsoons. In this study, synoptic meteorological observation data provided by the Korea Meteorological Administration were analyzed from January 1, 2012 to the end of August of 2022 to understand the regional wind characteristics of nuclear power plants and surrounding areas. The selected target areas consisted of 16 weather stations around the Hanbit, Kori, Wolsong, Hanul, and Saeul nuclear power plants that are currently in operation. The analysis was based on the temperature, wind direction, and wind speed data at those locations. Average, maximum, minimum, median, and mode values were analyzed using long-term annual temperature, wind speed, and wind direction data. Correlation coefficient values were also analyzed to determine the linear relationships among the temperature, wind direction, and wind speed. Among the 16 districts, Uljin had the highest wind speed. The median wind speed values for each region were lower than the average wind speed values. For regions where the average wind speed exceeds the median wind speed, Yeongju, Gochang, Gyeongju, Yeonggwang, and Gimhae were calculated as 0.69 m s^-1, 0.54m s^-1, 0.45m s^-1, 0.4m s^-1, and 0.36m s^-1, respectively. The average temperature in the 16 regions was 13.52 degrees Celsius; the median temperature was 14.31 degrees and the mode temperature was 20.69 degrees. The average regional temperature standard deviation was calculated and found to be 9.83 degrees. The maximum summer temperatures were 39.7, 39.5, and 39.3 in Yeongdeok, Pohang, and Yeongcheon, respectively. The wind directions and speeds in the 16 regions were plotted as a wind rose graph, and the characteristics of the wind direction and speed of each region were investigated. It was found that there is a dominant wind direction correlated with the topographical characteristics in each region. However, the linear relationship between the wind speed and direction by region varied from 0.53 to 0.07. Through this study, by evaluating meteorological observation data on a long-term synoptic scale of ten years, regional characteristics were found.

• Journal of Environmental Impact Assessment
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• v.32 no.1
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• pp.15-28
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• 2023

In the Republic of Korea, the target project scope of the small-scale EIA is stipulated as the plan area above around 5,000~60,000m² depending on a type of project and classification of land use. Whereas, the lower limit of the corresponding local government EIA project is generally located above the small-scale EIA's limits, and overlapping ranges exist. This situation has been enlarged since road construction and district unit planning were included as the target projects for small-scale EIA in the "Enforcement Decree of the Environmental Impact Assessment Act", which was partially revised in November 2016, and the current consultation system needed discussion in that small-scale EIA is allowed to be done without gathering review opinions at the local level. In fact, projects subjected to local government EIA but consulted as small-scale EIAs may seem insignificant because of a small number of total cases; however, it is worth paying attention to the fact that a local government may not add a target project due to the small-scale EIA. This study suggested the three policy measures for improving small-scale EIA to enhance the effectiveness of local government EIA: supplementing the institutional arrangements to incorporate the review opinion from the local region in small-scale EIA, giving priority to local EIA for conducing the projects in overlapping ranges with partial amendments on EIA law regarding exceptions to local government EIA, including small target projects (not to be small-scale EIA targets) to the ordinance that are deemed necessary to be conducted as local government EIA. Even though a positive function of small-scale EIA has been confirmed, efforts should be made to improve the situation in which many projects within local governments are consulted without review from the region.

• Molecules and Cells
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• v.20 no.1
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• pp.1-16
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• 2005

The peptidyl transferase center (PTC) is located in a protein free environment, thus confirming that the ribosome is a ribozyme. This arched void has dimensions suitable for accommodating the 3'ends of the A-and the P-site tRNAs, and is situated within a universal sizable symmetry-related region that connects all ribosomal functional centers involved in amino-acid polymerization. The linkage between the elaborate PTC architecture and the A-site tRNA position revealed that the A-to P-site passage of the tRNA 3'end is performed by a rotatory motion, which leads to stereochemistry suitable for peptide bond formation and for substrate mediated catalysis, thus suggesting that the PTC evolved by genefusion. Adjacent to the PTC is the entrance of the protein exit tunnel, shown to play active roles in sequence-specific gating of nascent chains and in responding to cellular signals. This tunnel also provides a site that may be exploited for local co-translational folding and seems to assist in nascent chain trafficking into the hydrophobic space formed by the first bacterial chaperone, the trigger factor. Many antibiotics target ribosomes. Although the ribosome is highly conserved, subtle sequence and/or conformational variations enable drug selectivity, thus facilitating clinical usage. Comparisons of high-resolution structures of complexes of antibiotics bound to ribosomes from eubacteria resembling pathogens, to an archaeon that shares properties with eukaryotes and to its mutant that allows antibiotics binding, demonstrated the unambiguous difference between mere binding and therapeutical effectiveness. The observed variability in antibiotics inhibitory modes, accompanied by the elucidation of the structural basis to antibiotics mechanism justifies expectations for structural based improved properties of existing compounds as well as for the development of novel drugs.

• Science of Emotion and Sensibility
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• v.11 no.4
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• pp.449-460
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• 2008

PET fabric is used as a regular clothing in the middle-east region which is called Chador as a women's clothing and Thobe as a men's clothing. Then there is a big difference of export price according to the minute hand characteristics of the PET fabrics, of which characteristics are due to the fibre and manufacturing process characteristics. This research surveys the optimum manufacturing conditions related to the fibre and fabric for the Thobe clothing which were developed in this study through comparison with high price Teijin Thobe manufactured in Japan. In this research, four kinds of Teijin fabrics made in Japan were prepared as a target quality specimen, and five kinds of developed fabrics were produced as an experimental specimens. These specimens were made by changing yarn denier, twist, yarn setting conditions and fabric density, which are also changed by twist contraction, weaving and finishing shrinkages. As a result of this study, the sensitive characteristics of Teijin Thobe fabrics can be analysed from fibre and fabric, and then the manufacturing design technology was constructed under the base of low twist texturing and 3 dimensional fabric design simulation technologies.