• 제목/요약/키워드: Tail to tail orientation

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Cloning and Characterization of a Gene Encoding 22 kDa Functional Protein of Bacteriophage MB78

  • Gupta, Lalita;Chakravorty, Maharani
    • BMB Reports
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    • 제38권2호
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    • pp.161-166
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    • 2005
  • Functional protein of MB78 bacteriophage having apparent molecular weight of 22 kDa is expressed from 1.7 kb HindIII G fragment. The nucleotide sequence of this fragment showed two open reading frames of 222 and 196 codons in tail-to-tail orientation separated by a 62-nucleotide intercistronic region. The ORF of 22 kDa protein is present in opposite orientation, i.e. in the complementary strand, preceded by a strong ribosomal binding site and a promoter sequence. Another ORF started from the beginning of the fragment whose promoter region and translational start site lies in the 0.45 kb HincII U fragment which is located next to the HindIII G fragment, that has the sequence for DNA bending. 3' end of the fragment has high sequence homology to the EaA and EaI proteins of bacteriophage P22, a close relative of MB78 phage.

Time-Resolved Infrared Spectroscopy of Molecular Reorientation During FLC Electro-Optic Switching

  • Jang, Won-Gun;Clark, Noel A.
    • 한국정보디스플레이학회:학술대회논문집
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    • 한국정보디스플레이학회 2003년도 International Meeting on Information Display
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    • pp.1112-1117
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    • 2003
  • Polarized Fourier transform infrared (IR) absorption is used to probe molecular conformation in a ferroelectric liquid crystal (FLC) during the reorientation induced by the external field. Spectra of planar aligned cells of FLC W314 are measured as functions of IR polarizer orientation and electric field applied to the FLC. The time evolution of the dichroism of the absorbance due to biphenyl core and alkyl tail molecular vibration modes, is observed. Static IR dichroism experiments show a W314 dichroism structure in which the principal axis of dielectric tensor from molecular core vibration are tilted further from the smectic layer normal than those of the tail. This structure indicates the effective binding site in which the molecules are confined in the Sm-C phase has, on average, "zig-zag" shape and this zig-zag binding site structure is rigidly maintained while the molecular axis rotates about the layer normal during field-induced switching.

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Effects of Halothane on Dimyristoylphosphatidylcholine Lipid Bilayer Structure: A Molecular Dynamics Simulation Study

  • Oh, Kwang-Jin;Klein, Michael L.
    • Bulletin of the Korean Chemical Society
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    • 제30권9호
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    • pp.2087-2092
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    • 2009
  • We performed molecular dynamics simulations on dimyristoylphosphatidylcholine lipid bilayer with 50 mol% halothane. The structural properties, electron density profile, segmental order parameter of acyl chains, headgroup orientation distribution, water dipole orientation distribution, have been examined. Overall the effects of the halothane molecules on structural properties of DMPC lipid bilayer were found to be small. The electron density profiles, the segmental order parameter, the headgroup orientation, the water dipole orientation were not affected significantly by the halothane molecules. Pressure tensor calculations shows that the lateral pressure increases at the hydrocarbon tail region and the headgroup region, and decreases at the water-headgroup interfacial region.

Penetrating behavior of target prawns (Sicyonia penicillata) contacting netting panels in an experimental water tunnel

  • KIM, Yonghae;GORDON, Malcolm S.
    • 수산해양기술연구
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    • 제54권3호
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    • pp.193-203
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    • 2018
  • Capture efficiencies of commercial shrimp trawls may improve if their designs took into better account behavioral responses of wild shrimp to approaching cod-end of the trawls. Here we report results of water tunnel-based experimental studies of responses of wild California target prawns to several different near-realistic netting configurations over a range of water velocities (0.3-0.7 m/s). Netting panels were oriented at parallel to water flows (FP) on the bottom of test section, vertical (VT) or diagonal sloping backward (DG), bottom to top. Behavioral responses were recorded by video camera and analyzed frame by frame. Measured responses included rates of penetrating through netting by behavioral features and tail-flip frequencies. Frequencies of prawn passing through the nets increased with flow speed for both orientations and were higher at given speeds for sloped nets. Other behavioral features (e.g., passage head-or tail-first) also varied significantly with water velocities and netting orientation. Interactions of penetrating rates between netting orientations and flow speeds also were significantly dependent, except for prawn size. Additional studies are needed of other shrimp species and at higher water velocities more similar to actual field operations using trawls to improve size selectivity.

Tail-to-Head Tandem Duplication and Simple Repetitive Sequences of the Cytoplasmic Actin Genes in Greenling Hexagrammos otakii (Teleostei; Scorpaeniformes)

  • Lee, Sang-Yoon;Kim, Dong-Soo;Nam, Yoon-Kwon
    • Fisheries and Aquatic Sciences
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    • 제14권4호
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    • pp.303-310
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    • 2011
  • We characterized a cytoplasmic actin gene locus in greenling Hexagrammos otakii (Scorpaeniformes). Genomic clones isolated from the greenling DNA library contained two homologous cytoplasmic actin gene copies (HObact2.1 and HObact2.2) in a tail-to-head orientation. Their gene structure is characterized by six translated exons and one non-translated exon. Exon-intron organization and the nucleotide sequences of the two actin gene isoforms are very similar. However, only the HObact2.1 isoform contains microsatellite-like, dinucleotide repeats in the 5'-flanking region (named HOms2002) and intron 1 following the non-translated exon 1 (named HOms769). One microsatellite locus (HOms769) was highly polymorphic while the other (HOms2002) was not. Based on bioinformatic analysis, different transcription factor binding motifs are related to stress and immune responses in the two actin isoforms. Semiquantitative and real-time reverse transcription-PCR assays showed that both isoform transcripts were detectable ubiquitously in all the tissues examined. However, the basal expression levels of each isoform varied across tissues. Overall, the two isoforms showed a similar, but not identical, expression pattern. Our data suggest that the cytoplasmic actin genes may be the result of a recent duplication event in the greenling genome, which has not experienced significant subfunctionalization in their housekeeping roles.

제조 방법에 따른 Titanium Disilicide 막의 특성 (The Characteristics of Titanium Disilicide Films following Manufacturing Methods)

  • 모만진;전법주;정일현
    • 공업화학
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    • 제10권3호
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    • pp.354-361
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    • 1999
  • 티타늄을 물리증착시킨 후 열처리한 막과 플라즈마에 의해 무정형 실리콘을 증착시킨 후 열처리한 막은 양질의 결정성을 갖는 Si가 풍부한 티타늄 실리사이드가 형성되고, 열처리 과정에서 에피택시 성장을 위한 격자들의 회전에 의해 다양한 형태의 격자구조를 갖는다. 티타늄 실리사이드 막의 band gap은 플라즈마에 의해 a-Si:H막을 증착시킨 후 열처리한 막이 수소의 탈착에 의해 제공된 dangling bond, a-Si 등의 영향을 받아 1.14~1.165 eV의 값을 가진다. 물리증착하여 열처리한 막의 Urbach tail인 $E_0$는 0.045~0.05 eV 범위로 거의 일정하고, 플라즈마에 의해 a-Si:H 막을 증착시킨 후 열처리한 막의 결함수는 Ti/Si를 열처리했을 때 얻어진 결함수보다 약 2~3 배 정도 많은 것으로 나타났다.

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Fine Structure of the Ampullate ilk Glands in the Wolf Spider, Pardosa astrigera (Araneae: Lycosidae)

  • Myung-Jin Moon
    • Animal cells and systems
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    • 제2권4호
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    • pp.513-520
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    • 1998
  • Though the wandering spiders do not produce webs for prey-catching, they have silk producing apparatus. Among the four kinds of silk glands in the wolf spider, Pardosa astrigera, the ampullate one is the most predominant gland in both sexes, and is composed of three functional parts; excretory duct, storage ampulla and convoluted tail regions. The duct is basically composed of three superposed types of layers which are inner cuticles, monolayered epithelial cells and peripheral connective cells. The electron lucent subcuticles which have the functions of water removal and orientation of silk fibers during polymerization are well developed at the anterior region near the spinneret. Whereas the endocuticles which contain two types of banding patterns at the cross section are developed at the rest of the duct region. The secretory silks are synthesized within the glandular epithelial cells of the tail as secretory granules, and then released to the inner cavity of the storage ampulla by the mechanism of apocrine secretion. Most of these secretory vesicles are originated from the rough endoplasmic reticula of the glandular epithelial cells, whereas no Golgi complexes are found in any of the cells which have been examined.

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무당거미(Nephila clavata L. Koch) (Fine Structural Study on the Capture Threads-producing Organs in Nephila clavata L. Koch (Araneae: Araneidae) II. Flagelliform Glands)

  • 문명진;김우갑
    • 한국동물학회지
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    • 제33권3호
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    • pp.354-364
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    • 1990
  • 무당거미의 많은 견사선들 중에서 포획사를 만들어내는 한쌍의 편상선은 분비관과 분비양, 그리고 말단분비부로 이루어져 있었고, 두쌍의 수상선과 함께 후방적돌기에서 triad 복합구조를 형성하고 있었다. 강한 섬유를 생성하기 위해 분비관은 길게 신장되어 있었고, 토사관과 근접된 원위부의 내벽에는 수분의 흡수와 관련된 subcuticle층이 비후되어 있었으며 분비낭에 가까운 근위부에서는 큐티클 전구물질의 수송현상이 관찰되었다. 분비낭의 상피는 원주상의 세포로 이루어져 있었고, 세포질에 구형의 분비과립을 함유하고 있었는데, 부위에 따라 과립의 형태와 전자밀도의 차이가 관찰되었다. 포획사의 주성분을 분비하는 말단분비부의 선상피세포에는 조면소포체가 특이적으로 발달되어 있었고, 생성된 견사물질은 이출분비의 기작에 의해 내강으로 방출되었다.

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적층조건에 따른 혼성 원형 박육부재의 충격압궤거동 (Impact Collapse Behavior of Hybrid Circular Thin-walled Member by Stacking Condition)

  • 이길성;박으뜸;양인영
    • 한국생산제조학회지
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    • 제19권2호
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    • pp.235-240
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    • 2010
  • The recent trend of vehicle design aims at crash safety and environmentally-friendly aspect. For the crash safety aspect, energy absorbing members should be absorbed with collision energy sufficiently. But vehicle structure must be light weight for the environmentally-friendly aspect, in order to improve fuel efficiency and to reduce tail gas emission. Therefore, the light weight of vehicle must be achieved in a status of securing safety of crash. An aluminum or CFRP (Carbon Fiber Reinforced Plastics) is representative one among the light-weight materials. In this study, impact collapse behavior of circular hybrid thin-walled member is evaluated. The hybrid members are manufactured by wrapping CFRP prepreg sheets outside the aluminum circular members in the autoclave. Because the CFRP is an anisotropic material whose mechanical properties change with its stacking condition, special attention is given to the effects of the stacking condition on the collapse behavior evaluation of the hybrid thin-walled member. Collapse mode and energy absorption capability of the hybrid thin-walled member are analyzed with change of the fiber orientation angle and interface number.

Influence of Polycondensation Type on Structure of Resorcinol Formaldehyde Resin Studied by Molecular Simulation

  • Park, Sung-Seen
    • Macromolecular Research
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    • 제8권3호
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    • pp.125-130
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    • 2000
  • Resorcinol formaldehyde resins are synthesized by polycondensation of resorcinol with formal-dehyde and have various structures by the condensation type. The influence of polycondensation type on the stability and structure of the resorcinol formaldehyde resin was studied by molecular mechanics and molecular dynamics. The resins formed by 2,6-polycondensation and 4,6-polycondensationwith head-to-tail orientations have structures of intramolecular hydrogen bonds between 1-hydroxyl groups and between outer hydroxyl groups of the adjacent resorcinols, respectively. The resin formed by 2,6-polycon-densation with head-to-head orientation has a structure that inner hydroxyl groups cluster in the center of the molecule. Energetical stability of the resin is affected by both the intramolecular hydrogen bonds and the steric' hindrance by phenyl group.

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