• Journal of KIISE:Databases
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• v.32 no.5
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• pp.558-566
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• 2005

The XML is the new standard fir data representation and exchange on the Internet. In this paper, we describe a new approach for evaluating a path-oriented query against XML document. In our approach, we propose the Parallel Match Indexing Fabric to speed up evaluation of path-oriented query using path signature and design the parallel match algorithm to perform a match process between a path signature of input query and path signatures of elements stored in the database. To construct a structure of the parallel match indexing, we first make the binary tie for all path signatures on an XML document and then which trie is transformed to the Parallel Match Indexing Fabric. Also we use the Parallel Match Indexing Fabric and a parallel match algorithm for executing a search operation of a path-oriented query. In our proposed approach, Time complexity of the algorithm is proportional to the logarithm of the number of path signatures in the XML document.

• Journal of KIISE
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• v.42 no.8
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• pp.961-971
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• 2015

As a representative area-decomposed algorithm, an area-based quad-trie (AQT) has an issue of search performance. The search procedure must continue to follow the path to its end, due to the possibility of the higher priority-matching rule, even though a matching rule is encountered in a node. A leaf-pushing AQT improves the search performance of the AQT by making a single rule node exist in each search path. This paper proposes a new algorithm to further improve the search performance of the leaf-pushing AQT. The proposed algorithm implements a leaf-pushing AQT using a hash table and an on-chip Bloom filter. In the proposed algorithm, by sequentially querying the Bloom filter, the level of the rule node in the leaf-pushing AQT is identified first. After this procedure, the rule database, which is usually stored in an off-chip memory, is accessed. Simulation results show that packet classification can be performed through a single hash table access using a reasonable sized Bloom filter. The proposed algorithm is compared with existing algorithms in terms of the memory requirement and the search performance.

• Journal of Creative Information Culture
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• v.5 no.3
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• pp.345-353
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• 2019

Several studies have been proposed to improve storage space efficiency by expressing binary trie data structure as a linear binary bit string. Compact binary tree approach generated using one binary trie increases the key search time significantly as the binary bit string becomes very long as the size of the input key set increases. In order to reduce the key search range, a hierarchical compact binary tree technique that hierarchically expresses several small binary compact trees has been proposed. The search time increases proportionally with the number and length of binary bit streams. In this paper, we generate several binary compact trees represented by full binary tries hierarchically. The search performance is improved by allowing a path for the binary bit string corresponding to the search range to be determined through simple numeric conversion. Through the performance evaluation using the worst time and space complexity calculation, the proposed method showed the highest performance for retrieval and key insertion or deletion. In terms of space usage, the proposed method requires about 67% ~ 68% of space compared to the existing methods, showing the best space efficiency.

• Journal of KIISE:Databases
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• v.34 no.2
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• pp.119-132
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• 2007

In molecular biology, approximate subsequence search is one of the most important operations. In this paper, we propose an accurate and efficient method for approximate subsequence search in large DNA databases. The proposed method basically adopts a binary trie as its primary structure and stores all the window subsequences extracted from a DNA sequence. For approximate subsequence search, it traverses the binary trie in a breadth-first fashion and retrieves all the matched subsequences from the traversed path within the trie by a dynamic programming technique. However, the proposed method stores only window subsequences of the pre-determined length, and thus suffers from large post-processing time in case of long query sequences. To overcome this problem, we divide a query sequence into shorter pieces, perform searching for those subsequences, and then merge their results. To verify the superiority of the proposed method, we conducted performance evaluation via a series of experiments. The results reveal that the proposed method, which requires smaller storage space, achieves 4 to 17 times improvement in performance over the suffix tree based method. Even when the length of a query sequence is large, our method is more than an order of magnitude faster than the suffix tree based method and the Smith-Waterman algorithm.

• Proceedings of the Korean Information Science Society Conference
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• 2003.10b
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• pp.4-6
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• 2003

본 논문에서는 대규모 DNA 시퀀스를 위한 트라이 인덱싱 기법을 기반으로 하는 효율적인 부분 시퀀스 검색 기법을 제시한다. 제안된 인덱싱 방안에서는 저장 공간 감소를 위하여 시퀀스의 각 문자를 최소 비트 정보로 표현하며, 저장 구조로서 포인터를 사용하지 않는 디스크 기반의 이진 접미어 트라이 구조를 사용한다. 질의 처리 방안에서는 포인터가 없는 이진 트라이 구조 상에서 질의 시퀀스를 검색하기 위하여 이진 정보 기반의 연산과정을 필요로 하며, 또한 단말 정보를 효율적으로 검색하기 위하여 별도의 단말정보 테이블과 인덱스 구조를 사용한다. 실험 결과에 의하면 제안된 방식은 기존의 접미어 트리 인덱싱 방식에 비하여 약 30~50%의 저장 공간 감소 효과를 가질 뿐 아니라, 평균 질의 처리 시간에 있어 약 20배까지의 성능 개선 효과를 갖는 것으로 나타났다.

• Journal of KIISE:Information Networking
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• v.30 no.2
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• pp.282-292
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• 2003

This paper proposes an efficient data structure for forwarding IPv4 and IPv6 packets at the gigabit speed in backbone routers. The LPM(Longest Prefix Matching) search becomes a bottleneck of routers' performance since the LPM complexity grows in proportion to the forwarding table size and the address length. To speed up the forwarding process, this paper introduces a data structure named BMT(Bit-Map Tie) to minimize the frequent main memory accesses. All the necessary search computations in BMT are done over a small index table stored at cache. To build the small index table from the tie representation of the forwarding table, BMT represents a link pointer to the child node and a node pointer to the corresponding entry in the forwarding table with one bit respectively. To improve the poor performance of the conventional tries when their height becomes higher due to the increase of the address length, BMT adopts a binary search algorithm for determining the appropriate level of tries to start. The simulation experiments show that BMT compacts the IPv4 backbone routers' forwarding table into a small one less than 512-kbyte and achieves the average speed of 250ns/packet on Pentium II processors, which is almost the same performance as the fastest conventional lookup algorithms.

• Journal of Korea Spatial Information System Society
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• v.10 no.1
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• pp.15-28
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• 2008

In ubiquitous sensor networks(USN) environment, it is essential to process region query for user-demand services. Using R-tree is a preferred technique to process region query for in-network query environment. In USN environment, USN middleware must select sensors that transfers region query with accuracy because the lifetime of sensors is that of whole sensor networks. When R-tree is used, however, it blindly passes the region query including non-existent sensors where MBR(Minimum Boundary Rectangle) of R-tree is Intersected by region of query. To solve in this problem, we propose a reconstruction of region query method which is a trie-structured Quad tree in the base station that includes sensors in region of query select with accuracy. We observed that the proposed method delays response time than R-tree, but is useful for reducing communication cost and energy consumption.

• Journal of KIISE:Databases
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• v.31 no.6
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• pp.650-663
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• 2004

In molecular biology, DNA sequence searching is one of the most crucial operations. Since DNA databases contain a huge volume of sequences, a fast indexing mechanism is essential for efficient processing of DNA sequence searches. In this paper, we first identify the problems of the suffix tree in aspects of the storage overhead, search performance, and integration with DBMSs. Then, we propose a new index structure that solves those problems. The proposed index consists of two parts: the primary part represents the trie as bit strings without any pointers, and the secondary part helps fast accesses of the leaf nodes of the trio that need to be accessed for post processing. We also suggest an efficient algorithm based on that index for DNA sequence searching. To verify the superiority of the proposed approach, we conducted a performance evaluation via a series of experiments. The results revealed that the proposed approach, which requires smaller storage space, achieves 13 to 29 times performance improvement over the suffix tree.

• Proceedings of the Korea Information Processing Society Conference
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• 2000.10a
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• pp.379-382
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• 2000

본 논문은 정보검색을 위한 형태소분석기를 소개한다. 검색엔진의 속도향상을 지향한다면 형태소분석 알고리즘과 참조하는 사전의 구조를 어떻게 구성하는가에 따라 처리속도에 상당한 변화를 기대할 수 있으며, 본 논문에서는 알고리즘으로 최장일치법을 이용하고, 사전내부구조로 AVL+Trie 구조를 이용하여 사전참조의 속도향상을 기대하였다.

• Proceedings of the Korea Information Processing Society Conference
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• 2003.05c
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• pp.1583-1586
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• 2003

DNA 시퀀스는 A, C, G, T 네 개의 문자로 구성된 매우 긴 시퀀스로 볼 수 있다. 고속으로 유사 DNA 시퀀스를 검색하기 위하여 인덱싱 기술을 이용하는 것이 일반적이다. 그러나 검색 대상의 유전체 데이터베이스는 그 크기가 매우 크며, 또한 지수 함수적으로 크기가 급속히 증가하고 있으므로, 기존의 인덱싱 기법을 그대로 적용할 경우, 실용성에 한계가 있다. 본 논문에서는 이와 같은 문제점을 해결할 수 있는 대규모 유전체 데이터베이스를 위한 효율적인 인덱싱 기법과 질의처리 기법을 제안한다. 기본 구조로서 접미어 트라이를 사용하며, 접미어 트리 인덱스 구조의 최대 단점인 인덱스 크기를 줄일 수 있는 데이터 압축 표현 방식을 제안한다. 또한 제안된 데이터 압축 표현 방식의 디스크 기반 인덱스 구성 알고리즘과 이를 활용한 부분 시퀀스 검색 알고리즘을 보이고, 그 저장 성능의 비교 평가결과를 보인다.