• Plant Biotechnology Reports
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• 제3권2호
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• pp.167-174
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• 2009

To identify genes involved in rice Pi5-mediated disease resistance to Magnaporthe oryzae, we compared the proteomes of the RIL260 rice strain carrying the Pi5 resistance gene with its susceptible mutants M5465 and M7023. Proteins were extracted from the leaf tissues of both RIL260 and the mutant lines at 0, 24, and 48 h after M. oryzae inoculation and separated by two-dimensional polyacrylamide gel electrophoresis (2-DE). Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) analysis identified eight proteins that were differently expressed between the resistant and susceptible plants (three down- and five up-regulated proteins in the mutants). The down-regulated proteins included a triosephosphate isomerase (spot no. 2210), a 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (no. 3611), and an unknown protein (no. 4505). In addition, the five up-regulated proteins in the mutants were predicted to be a fructokinase I (no. 313), a glutathione S-transferase (no. 2310), an atpB of chloroplast ATP synthase (no. 3616), an aminopeptidase N (no. 3724), and an unknown protein (no. 308). These results suggest that proteomic analysis of rice susceptible mutants is a useful method for identifying novel proteins involved in resistance to the M. oryzae pathogen.

• 한국축산식품학회지
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• 제33권2호
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• pp.281-286
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• 2013

Salmonella Gallinarum (SG) is known as an important pathogen that causes fowl typhoid in chickens. To investigate SG outer-membrane proteins (OMPs) as a vaccine candidate, we used proteomic mapping and database analysis techniques with extracted OMPs. Also, extracted OMPs were evaluated in several aspects to their safety, immune response in their host and protective effects. Our research has established a proteomic map and database of immunogenic SG-OMPs used as inactive vaccine against salmonellosis in chickens. A total of 22 spots were detected by 2-dimensional gel electrophoresis and immunogenic protein analysis. Eight spots were identified by Matrix-Assisted Laser Desorption/Ionization-Time of Flight-Mass spectrometry (MALDI-TOF-MS) and peptide mass fingerprinting (PMF) and categorized into four different types of proteins. Among these proteins, OmpA is considered to be an immunogenic protein and involved in the hosts' immune system. To estimate the minimum safety dose in chickens, 35 brown layers were immunized with various concentrations of OMPs, respectively. Consequently, all chickens immunized with more than a $50{\mu}g$ dose were protected against challenges. Moreover, intramuscular administration of OMPs to chickens was more effective compared to subcutaneous administration. These results suggest that the adjuvanted SG-OMP vaccine not only induces both the humoral and cellular immune response in the host but also highly protects the hosts' exposed to virulent SG with $50{\mu}g$ OMPs extracted by our method.

• 농약과학회지
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• 제16권3호
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• pp.195-201
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• 2012

본 연구는 경기도에서 유통 중인 수입과실류에 대한 잔류농약 분석을 수행하였다. 총 22품목 124건의 시료를 구입하여 GC/NPD-ECD, TOF/MS, UPLC/PDA 및 HPLC/FLD, LC/MS/MS를 이용하여 218종 잔류농약을 동시 다성분 분석법으로 분석한 결과 18건의 과실에서 잔류농약이 0.003~0.3 mg/kg 범위로 검출되었으나 기준초과 시료는 없었다. 과실의 부위별 특성에 따른 잔류농약정도를 알아보기 위해 농약이 검출된 과실류 중 14건에 대하여 분리 실험을 실시하였으며, 그 결과 과피 14건에서 0.03~1.5 mg/kg, 과육의 경우 2건에서 검출한계 미만으로 나타났다. 실험결과 모두 잔류농약허용기준 이내에서 검출되어 정상적인 방법으로 섭취할 경우 위해도는 매우 낮은 수준이었다. 그러나 미량이라도 장기간 섭취시 인체에 유해할 수 있으며, 검출빈도가 높은 성분들이 검출되므로 수입과실에 대한 지속적이고 체계적인 모니터링이 필요하겠다.

• 핵의학기술
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• 제16권2호
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• pp.68-80
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• 2012

감쇠 보정법과 산란 보정법은 정량적인 PET검사를 하기 위한 필수적인 방법이다. PET/CT에서는 PET에서 사용하는 소멸방사선과 CT의 X선이 같은 전리 방사선이기 때문에 측정에 의한 CT의 Hounsfield Units를 감쇠 계수로 전환해서 감쇠보정, 산란보정이 가능하다. 그러나 PET/MR에서 MR는 강한 자기장을 걸어 수소밀도와 조직의 이완률차이로 되돌아오는 변화로 신호를 획득하기 때문에 CT처럼 전환하는 것은 불가능하다. Ingenuity TF PET/MR장비는 soft tissue, lung, air로 3구역을 segment하여 MR 감쇠지도를 얻는다. 이에 신호획득원리가 완전히 상이한 PET/MR과 PET/CT에 대한 정량적 평가를 하고자 한다. Phantom study로 uniform cylinder phantom에 증류수 9293 ml와 $^{18}F$-FDG 199.8 MBq를 넣고 magnetic stirrer를 이용하여 균일하게 교반한 후 60 min부터 15분 간격으로 Ingenuity TF PET/MR, Gemini TF 64, Biograph Truepoint 40를 이용하여 각각 single-bed로 2 min씩으로 영상을 얻었다. phantom의 중심부분 10개의 slice에 대한 동일한 관심영역을 그려 SUVs를 측정하고 평균, 표준편차를 구하였다. 그리고 임상적용을 위한 평가로 $^{18}F$-FDG 섭취가 정상인 환자를 대상으로 90 sec/bed씩 Ingenuity TF PET/MR을 시행한 후 Gemini TF 64 PET/CT 검사를 실시하였다. 각각의 data에서 lung, liver, spleen, bone 위치에 동일한 관심영역을 그려 SUVs 최대값과 평균값을 측정하고, %Difference를 구하였다. 또한, PET 장비들 사이에서의 일치도를 평가하기 위해 Bland-Altman plot 분석을 하였다. Phantom study에서 3가지 장비에서 측정한 SUVs 최대값과 평균값은 Biograph Truepoint 40, Gemini TF 64, Ingenuity TF PET/MR 순으로 높은 것을 확인할 수 있었다. patients study에서는 MR과 CT로 감쇠 보정한 PET장비의 SUVs 최대값과 평균값이 서로 유의미한 차이가 없었다.(p<0.05) Lung에서 left middle lobe과 transverse bone을 제외하고는 MR로 감쇠 보정한 PET의 SUVs가 대체로 낮았다. Bland Altman Plot으로 분석한 결과 대부분의 항목에서 95% 신뢰구간의 일치한계선내에서 측정되었다. PET/CT에서는 time of flight 기능을 가진 PET이 SUVs가 낮게 측정되었다. PET/MR과 PET/CT에서 알아본 SUVs차이는 MR을 이용한 분할 감쇠 보정방법이 CT를 사용한 측정 감쇠보정방법보다 SUVs가 낮게 측정되었다. 이러한 다른 감쇠 보정법에 의한 SUVs의 차이는 임상적으로는 용인할 수준에 있었지만, 향후 PET/MR와 PET/CT의 정량적인 값을 비교 분석할 때 PET 장비들간의 특성은 고려할 필요가 있다.

• 생명과학회지
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• 제27권11호
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• pp.1276-1289
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• 2017

참담치 hemocyte에 존재하는 항균 펩타이드를 역상 HPLC column을 사용하여 분리 및 정제하였다. 정제된 펩타이드는 matrix-assisted laser desorption ionization time-of-flight mass spectrophotometer (MALDI-TOF/MS) 분석을 통해 분자량이 3330.549 Da이며, edman 분해법을 통해 14개의 N-말단 아미노산 서열을 확보하였다. 분석한 N-말단 서열은 M. californianus의 sperm-specific protein Phi-1과 protamine-like PL-III protein과 각각 93%와 87%의 유사도를 나타냈으며, M. edulis의 sperm-specific protein Phi-1과 87% 일치함을 확인하였다. 또한 open-reading frame (ORF)은 306 bp의 길이에 101개의 아미노산을 코딩하고 있음을 밝혔으며, 이는 M. californianus의 sperm-specific protein Phi-1와 93.5% 유사하였다. 분자량과 아미노산 서열에 근거하여 31개 아미노산으로 구성된 펩타이드를 합성하였으며 이는 그람 양성균인 B. subtilis, S. mutans, S. aureus와 그람 음성균인 E. coli, K. pneumoniae, P. mirabilis, P. aeruginosa 그리고 진균류인 C. albicans에 항균 활성을 보였다. 합성한 펩타이드는 항생제 내성균주인 S. aureus CCARM 0203와 S. aureus CCARM 0204에 항균 활성을 보였다. 합성 항균 펩타이드는 넙치 혈장에 대한 용혈현상은 없었고, 세포독성을 확인한 결과 HUVEC cell line에 전혀 독성을 보이지 않았다. 본 연구결과, 참담치의 혈구로부터 분리 및 정제한 sperm-specific protein 유래 항균 펩타이드는 다양한 균주에 항균 활성을 보였고 낮은 세포독성을 가졌으며, 이러한 특성은 본 실험에서 분리한 항균 펩타이드가 항생제 대체재로서 개발 가능성을 제시하고 있다.

• 한국생물공학회:학술대회논문집
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• 한국생물공학회 2003년도 생물공학의 동향(XII)
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• pp.40-44
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• 2003

Soil-borne infectious disease including Pythium aphanidermatum and Rhizoctonia solani causes severe damage to plants, such as cucumber. This soil-borne infectious disease was not controlled effectively by chemical pesticide. Since these diseases spread through the soil, chemical agents are usually ineffective. Instead, biological control, including antagonistic microbe can be used as a preferred control method. An efficient method was developed to select an antagonistic strain to be used as a biological control agent strain. In this new method, surface tension reduction potential of an isolate was included in the ‘decision factor’ in addition to the other factors, such as growth rate, and pathogen inhibition rate. Considering these 3 decision factors by a statistical method, an isolate from soil was selected and was identified as Bacillus sp. GB16. In the pot test, this strain showed the best performance among the isolated strains. The lowest disease incidence rate and fastest seed growth was observed when Bacillus sp. GB16 was used. Therefore this strain was considered as plant growth promoting rhizobacteria (PGPR). The action of surface tension reducing component was deduced as the enhancement of wetting, spreading, and residing of antagonistic strain in the rhizosphere. This result showed that new selection method was significantly effective in selecting the best antagonistic strain for biological control of soil-borne infectious plant pathogen. The antifungal substances against P. aphanidermatum and R. solani were partially purified from the culture filtrates of Bacillus sp. GB16. In this study, lipopeptide possessing antifungal activity was isolated from Bacillus sp. GB16 cultures by various purification procedures and was identified as a surfactin-like lipopeptide based on the Fourier transform infrared spectroscopy (FT-IR), nuclear magnetic resonance (NMR), high performance liquid chromatography mass spectroscopy (HPLC-MS), and quadrupole time-of-flight (Q-TOF) ESI-MS/MS data. The lipopeptide, named GB16-BS, completely inhibited the growth of Pythium aphanidermatum, Rhizoctonia solani, Penicillium sp., and Botrytis cineria at concentrations of 10 and 50 mg/L, respectively. A novel method to prevent the foaming and to provide oxygen was developed. During the production of surface active agent, such as lipopeptide (surfactin), large amount of foam was produced by aeration. This resulted in the carryover of cells to the outside of the fermentor, which leads to the significant loss of cells. Instead of using cell-toxic antifoaming agents, low amount of hydrogen peroxide was added. Catalase produced by cells converted hydrogen peroxide into oxygen and water. Also addition of corn oil as an oxygen vector as well as antifoaming agent was attempted. In addition, Ca-stearate, a metal soap, was added to enhance the antifoam activity of com oil. These methods could prevent the foaming significantly and maintained high dissolved oxygen in spite of lower aeration and agitation. Using these methods, high cell density, could be achieved with increased lipopeptide productivity. In conclusion to produce an effective biological control agent for soil-borne infectious disease, following strategies were attempted i) effective screening of antagonist by including surface tension as an important decision factor ii) identification of antifungal compound produced from the isolated strain iii) novel oxygenation by $H_2O_2-catalase$ with vegetable oil for antifungal lipopeptide production.

• Journal of Ginseng Research
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• 제42권3호
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• pp.270-276
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• 2018

Background: Notoginsenoside Ft1 is a promising potential candidate for cardiovascular and cancer disease therapy owing to its positive pharmacological activities. However, the yield of Ft1 is ultralow utilizing reported methods. Herein, an acid hydrolyzing strategy was implemented in the acquirement of rare notoginsenoside Ft1. Methods: Chemical profiles were identified by ultraperformance liquid chromatography coupled with quadruple-time-of-flight and electrospray ionization mass spectrometry (UPLC-Q/TOF-ESI-MS). The acid hydrolyzing dynamic changes of chemical compositions and the possible transformation pathways of saponins were monitored by ultrahigh-performance LC coupled with tandem MS (UHPLC-MS/ MS). Results and conclusion: Notoginsenoside Ft1 was epimerized from notoginsenoside ST4, which was generated through cleaving the carbohydrate side chains at C-20 of notoginsenosides Fa and Fc, and vinaginsenoside R7, and further converted to other compounds via hydroxylation at C-25 or hydrolysis of the carbohydrate side chains at C-3 under the acid conditions. High temperature contributed to the hydroxylation reaction at C-25 and 25% acetic acid concentration was conducive to the preparation of notoginsenoside Ft1. C-20 epimers of notoginsenoside Ft1 and ST4 were successfully separated utilizing solvent method of acetic acid solution. The theoretical preparation yield rate of notoginsenoside Ft1 was about 1.8%, which would be beneficial to further study on its bioactivities and clinical application.