• Fisheries and Aquatic Sciences
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• 제25권3호
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• pp.158-166
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• 2022

The complete mitochondrial genome of Tremoctopus violaceus was sequenced to analyze its organization and phylogenetic status within the order Octopoda. The mitochondrial genome of T. violaceus had a structure and organization similar to that of other Octopoda. The content of the nucleotides A, C, G, and T was 31.68 %, 7.71 %, 20.02 %, and 40.58 %, respectively. All protein-coding genes (PCG) began with the ATG codon, excluding ND4 and ATP6, which began with ATC and ATT, respectively, and terminated with TAG, TAA, TA, or T. Codons for isoleucine were the most used codons, whereas those for arginine were used the least. Two extra tRNAs, trnN and trnL, were found in the control region. These tRNAs have a D-armless structure. The control region had excess A + T content (83.16 %) and a stem-loop structure with two elements, which is reported for the first time in Octopoda by our study. Bayesian inference using 13 PCG revealed that Octopus and Octopodidae were polyphyletic, and that Tremoctopodidae diverged relatively earlier within Octopoda. The mitochondrial genome of T. violaceus and its characteristics may help to understand the evolutionary history of Octopoda and establish a marine biodiversity conservation strategy.

• 한국포장학회지
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• 제8권2호
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• pp.27-31
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• 2002

제주산 감귤을 기존의 골판지와 이골판지에 특성이 다른 선도 유지기능성 소재 3종을 상자 내면에 코팅하여 여기에 감귤을 넣고 $25^{\circ}C$에 8일간 저장하면서 선도 유지효과를 조사하였다. 중량은 모든 포장구에서 2.6-3.7%가 감소하였고 산도와 당도는 포장구간에 차가 없었으며 비타민 C 함량은 대조구 보다 R-Box와 Y-Box가 10% 높게 유지되고 있었다. 부패율도 R-Box는 4%였으나 나머지 포장구는 8-11%의 감귤이 부패되었으며 외관도 R-Box가 가장 양호하였다.

• Journal of Microbiology
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• 제37권3호
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• pp.168-174
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• 1999

Escherichia coli O157 is an important pathogenic organism which causes diarrhea, haemorrhagic colitis, and haemolytic ureamic syndrome (HUS) in human. E. coli O157 KNIH317 was isolated form patients suffering with HUS in Korea. We designed a primer set for cloning shiga-like toxin (slt) gene. The amplified PCR product was used to Southern and colony hybridization as a probe. As a result, we cloned 4.5-kb KpnI fragment containing the slt gene encoding shiga-like toxin from chromosomal DNA of E. coli O157 KNIH317. This recombinant plasmid was named pOVT45. E. coli XL1-Blue harboring pOVT45 showed cytotoxicity in Vero cells. We sequenced the slt gene of this strain. The A-subunit gene of the slt was composed of 960 base pairs with ATG initiation codon and TAA terminationcodon. The B-subunit was composed of 270 base paris with ATG initiation codon and TGA termination codon. Nucleotide sequence comparison of the slt gene exhibited 100%, 98.4%, 93.7%, and 93.7% identity with that of shiga-like toxin type II (sltII) of E. coli bacteriophage 933W, variant slt of E. coli, slt of E. coli, and variant sltII of E. coli, respectively. From these results, it was concluded that the cloned slt gene belongs to SltII family and that the strain used in this study may be a lysogeny of E. coli bcteriphage 933W.

• 한국작물학회지
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• 제51권2호
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• pp.118-122
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• 2006

This experiment was carried out on plastic pots ($40cm{\times}25cm{\times}30cm$) filled with sand soil at greenhouse using two soybean cultivars with small seed; one was Pungsannamulkong (PSNK) recognized as a tolerant cultivar against excessive water stress and the other one was Sobaeknamulkong (SBNK) recognized as a susceptible cultivar. Seed was sown with 30 plants of 2 hills, and the amount of applied fertilizer was N; 3.0 g, P; 3.0 g, and K; 3.4 g per $m^2$ with all basal fertilizations. Plants were grown under photoperiod of natural light with day temperature of $31{\pm}5^{\circ}C$ and night temperature of $22{\pm}1^{\circ}C$. The flooding treatment was done for 3, 5, 7 and 10 days by filling pots with tap water up to 1 cm above the level of the soil surface when plants were 2 days after emerging. Nitrogen uptake by leaves of soybeans decreased significantly by the flooding after 6 days. This significant reduction of N uptake by flooding was evidently recognized from the chlorosis of leaves. The dry matter of flooded soybean seedlings significantly decreased compared to non-flooded soybean seedlings at 10 days. The dry matter of roots also showed similar result of the shoot. Shoots had more N reduction than roots under the flooding. This N reduction was more pronounce in SBNK than in PSNK. Chlorophyll content of flooded soybeans showed decreasing or non-increasing tendency, and the reduction of chlorophyll content was more in SBNK than in PSNK from the flooding stress. Nitrate content of soybean seedlings with flooding stress showed decreasing tendency in shoot and root parts. Ammonium content, however, was higher in flooding stress compared to the non-flooding. Flooding caused a remarkable change in the AA (amino acid) composition and TAA (total amino acid) concentration in the leaves of soybean seedlings.

• 한국미생물·생명공학회지
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• 제28권3호
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• pp.147-151
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• 2000

Brevibacterium ammoniagenes 염색체상에서 phosphotrans-ferase system의 glucose permease를 코드하는 ptsG 유전자와 인접한 지역의 염기서열을 결정한 결돠 1,467 nucleo-tides로 구성된 1개의 open reading frame(ORF)이 발견되었고 이것은 489 아미노산 잔기로 구성되는 단백질을 코드하는 것으로추정된다. 이러한 ORF로부터 추정된 단백질의 아미노산 잔기배열을 분석한 결과 30S 리보좀을 구성하는 단백질중의 하나인 S1과 상동성이 높은 것으로 나타났는데 특히 Mycobacterium tuberculosis M. leprae와 Srepto-myces coelicola의 S1단백질의 아미노산 잔기배열과 각각 83%, 74%m, 77%의 매우 높은 상동성을 보였으며 Escherichia coli의 것과도 약 40%의 상동성을 보였다 이로보아 B.ammoniagenes 염색체상에서 ptsG 유전자와 인접한 지역에 존재하는 ORF는 리보좀 단백질 S1의 유전자로 추정된다. 또한 이들은 염색체상에서 동일한 방향으로 판독되며 S1의 유전자가 ptsG의 위 지역으로 266 nucleotides 떨어져 존재하고 있다.

• Journal of Microbiology and Biotechnology
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• 제20권1호
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• pp.208-216
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• 2010

Fusarium verticillioides is an important pathogen of maize, being responsible for ear rots, stalk rots, and seedling blight worldwide. During the past decade, F. verticillioides has caused several severe epidemics of maize seedling blight in many areas of China, which lead to significant losses. In order to understand the molecular mechanisms regulating fungal development and pathogenicity in this pathogen, we isolated and characterized the gene fpk1 (GenBank Accession No. EF405959) encoding a homolog of the cAMP-dependent protein kinase catalytic subunit, which included a 1,854-bp DNA sequence from ATG to TAA, with a 1,680-bp coding region, and three introns (lengths: 66 bp, 54 bp, and 54 bp), and the predicated protein precursor had 559 aa. The mutant ${\Delta}fpk1$, which was disrupted of the fpkl gene, showed reduced vegetative growth, fewer and shorter aerial mycelia, strongly impaired conidiation, and reduced spore germination rate. After germinating, the fresh hypha was stubby and lacking of branch. When inoculated in susceptible maize varieties, the infection of the mutant ${\Delta}fpk1$ was delayed and the infection efficiency was reduced compared with that of the wild-type strain. AU this indicated that gene fpk1 participated in hyphal growth, conidiophore production, spore germination, and virulence in F. verticillioides.

• 아시안잔디학회지
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• 제13권2호
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• pp.71-78
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• 1999

The influence of increasing livel (0.0, 0.05, 0.1, 0.2, 0.4, 0.6, 0.8, 1.2, 1.6, and 2.0%) fo NaCl on the germination of red fescue (Festuca rubra) 'Sea Breeze', tall fesce(Festucaarundinacea) 'Pixie', creeping red fescue (Festuca rubra ssp. rubra) 'Cindy', annual rye-grass (Lolium multiflorum) 'Permer Ⅱ', perennial ryegrass (Lolium perenne) 'Pennant', fairway wheatgrass(Agropyron cristatum), creeping bentgrass (Agrostis palustris) 'Penncross', and kentucky bluegrass (Poa pratensis) 'Nuglade' was investigated. Red fescue 'Sea Breeze', tall fescue 'Pixie', and creeping red fescue 'Cindy' had greater than 90% seed germination at NaCl concentrations of 0.2% or lower, while showing similar seeding shoot and root lengths and TAA50 values as the control. Creeping red fescue 'Cindy'gave at 0.6% or higher NaCl. Perennial ryegrass 'Pennant' and annual ryegrass 'Permer Ⅱ' showed more than 95% seed germination when NaCl concentrations were 0.4% and 0.8%, respectively. Fairway wheatgrass, creeping bentgrass 'Penncross' and Kentucky bluegrass 'Nugade' had showing similar germination percent, shoot and root lengths and T50 values as the control at NaCl concentrations of 0.1% or lower. In general, germination percent and the lengthes of seedling roots and shoots of all species tested decreased as NaCl concentrations iscreased. The T50 values became greater as NaCl concentration increased. Seed fermination in red fescue 'Sea Breeze', tall fescue 'Pixie',perennial ryegrass 'Pennant', and annual ryegrass 'Permer Ⅱ' was compoetely inhibited at 2.0% NaCl. Creeping red fescue 'Cindy' and fairway wheatgrass gardly germinated at 1.6% MaCl. Creeping bentgrass 'Penncross' and Dentucky bluegrass 'Nuglade' showed a complete inhibition of germination at 1.2% and 0.6% NaCl, respectively.

• Journal of Microbiology and Biotechnology
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• 제8권4호
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• pp.378-387
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• 1998

The DNA sequence immediately following the xynA gene of Bacillus stearothermophilus 236 ［about l-kb region downstream from the translational termination codon (TAA) of the xynA gene］was found to have an ability to enhance the xylanase activity of the upstream xynA gene. An 849-bp ORF was identified in the downstream region, and the ORF was confirmed to encode a novel protein of 283 amino acids designated as XaiF (xylanase-activity-increasing factor). From the nucleotide sequence of the xaiF gene, the molecular mass and pI of XaiF were deduced to be 32,006 Da and 4.46, respectively. XaiF was overproduced in the E. coli cells from the cloned xaiF gene by using the T7 expression system. The transcriptional initiation site was determined by primer extension analysis and the putative promoter and ribosome binding regions were also identified. Blast search showed that the xaiF and its protein product had no homology with any gene nor any protein reported so far. Also, in B. subtilis, the xaiF trans-activated the xylanase activity at the same rate as in E. coli. In contrast, xaiF had no activating effect on the co-expressed ${\beta}-xylosidase$ of the xylA gene derived from the same strain of B. stearothermophilus. In addition, the intracellular and extracellular fractions from the E. coli cells carrying the plasmid-borne xaiF gene did not increase the isolated xylanase activity, indicating that the protein-protein interaction between XynA and XaiF was not a causative event for the xylanase activating effect of the xaiF gene.

• IMMUNE NETWORK
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• 제5권3호
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• pp.157-162
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• 2005

Background: 1-8D gene is a member of human 1-8 interferon inducible gene family and was shown to be overexpressed in fresh colon cancer tissues. Three peptides 1-6, 3-5 and 3-7 derived from human 1-8D gene were shown to have immunogenicity against colon cancer. Methods: To study tumor immunotherapy, of three peptides we established an active immunization model using HHD mice. $D^{b-/-}{\times}{\beta}2$ microglobulin $({\beta}2m)$ null mice transgenic for a chimeric HLA-$A2.1/D^{b-}\;{\beta}2m$ single chain (HHD mice) were challenged with B16/HHD/1-8D tumor cells and were immunized with irradiated peptide-loaded RMA- S/HHD/B7.1 transfectants. In therapy model tumor growth was retarded in HHD mice that were injected with 3-5 peptide-loaded RMA-S/HHD/B7.1. In survival test vaccination with 1-8D-derived peptide protects HHD mice from tumor progression after tumor challenge. Results: These studies show that peptide 3-5 derived from 1-8D gene can be the most effective candidate for the vaccine of immunotherapy against colon cancer and highlight 1-8D gene as putative colon carcinoma associated antigens. Conclusion: We demonstrated that RMA-S/HHD/ B7.1 loaded with 1-8D peptides, especially 3-5, immunization generates potent antitumor immunity against tumor cells in HHD mice and designed active immunization as proper immunotherapeutic protocols.

• Asian Pacific Journal of Cancer Prevention
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• 제15권4호
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• pp.1715-1717
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• 2014

The overall incidence and mortality of renal cell carcinoma (RCC), the most common kidney cancer, are steadily increasing for reasons that are not fully explained. Our aim was to explore the expression of membrane MHC class I chain-related gene A (mMICA) in human RCC cell lines and tissue specimens, and to determine expression of soluble MICA (sMICA) in serum of patients with renal cell carcinoma, we used flow cytometry (FCM) and immunohistochemistry as well as an enzyme linked immunosorbent assay (ELISA). The results showed that percentage of mMICA expression was significantly increased in human kidney cancer tissues and RCC cell lines (786-O and Ketr-3) than that in healthy adults and human embryonic kidney 293 (HEK293) cell line individuality (P<0.05). sMICA content in healthy adults was negative, but in renal cancer patients was significantly elevated (P<0.05). Our research showed that high expression of MICA in human kidney cancer, this results show that MICA might serve as potential tumor-associated antigen (TAA) in RCC.