• Title/Summary/Keyword: Subspecific

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Systematic Studies on the Freshwater Goby, Rhinogobius Species (Perciformes, Geobiidae) III. Geographic Variation and Subspecific Differentiation in Rhinogobius giurinus, with a Comment on Genetic Relationships among Four Species of the Genus Rhinogobius in Korea

  • Kim, Jong-Bum;Kim, Jae-Heup;Yang, Suh-Yung
    • Animal cells and systems
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    • v.1 no.4
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    • pp.529-534
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    • 1997
  • Genetic and morphological variations of Rhinogobius giurinus were surveyed. Populations of R.giurinus were clearly divided into two forms (Form-A and Form-B). Starch gel variation of this species. Three loci (Aco, Mpi, aGpd) out of 27 showed fixed allelic differences between Form-A and Form-B and they are well differentiated from each other genetically (Rogers' S=0.871). These two forms, moreover, are found to be allopatric in distribution and morphologi cally different in body length and caudal fin color pattern. Therefore, they are considered as two distinct taxa of subspecific rank. In addition, the genetic relationships among 5 taxa within 4 species of the genus Rhinogobius were investigated. Three species of the Rhinogobius brunneus complex (R.sp. OR, R. sp. CB and R. sp. CO) are well differentiated from each other genetically and two taxa of R. giurinus are genetically divergent from three species of the Rhinosotius brunneus complex (average Nei's D=0.603, average Rogers'=0.534).

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Identification of Heterosis QTLs for Yield and Yield-Related Traits in Indica-Japonica Recombinant Inbred Lines of Rice (Oryza sativa L.)

  • Kim, Chang-Kug;Chu, Sang-Ho;Park, Han Yong;Seo, Jeonghwan;Kim, Backki;Lee, Gileung;Koh, Hee-Jong;Chin, Joong Hyoun
    • Plant Breeding and Biotechnology
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    • v.5 no.4
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    • pp.371-389
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    • 2017
  • Supplying sufficient rice to growing populations is a global challenge. Hybrid indica rice varieties exploiting heterosis have increased yields, but inter-subspecific crosses between indica and japonica varieties are hampered by sterility. Examination and genetic understanding of yield heterosis in indica/japonica crosses addressing yield barriers are basic requirements. In this study, QTLs for heterosis of yield traits were identified in indica-japonica recombinant inbred lines (RILs) using a total of 178 RILs originating from Dasanbyeo (indica) ${\times}$ TR22183 (japonica) (DT-RILs) and their backcrossed populations. Nine of sixty-six major quantitative trait loci (QTLs) identified in DT-RILs exhibited heterosis. Heterosis QTLs clustered with other traits on chromosomes 1, 4, and 8, and clusters were conserved between different RILs. The clusters contained several known yield enhancement genes/QTLs. Specific heterotic allele combinations contributed to four major heterosis QTLs, particularly for panicle and spikelet number traits. Heterosis for yield and yield-related traits was explained by the harmonized effects of overdominance, dominance, and epistatic interactions in inter-subspecific breeding populations.

DNA Profiling of Leuconostoc citreum Strains in Fermented Foods by Repetitive Element Polymerase Chain Reaction

  • Kaur, Jasmine;Sharma, Anshul;Lee, Sulhee;Park, Young-Seo
    • Journal of Microbiology and Biotechnology
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    • v.27 no.10
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    • pp.1778-1782
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    • 2017
  • To identify and discriminate the bacterial species at the subspecific level, rep-PCR is a reliable genomic fingerprinting tool. Fourteen strains of bacteria were isolated from different food sources, identified as Leuconostoc citreum using 16S rRNA gene sequencing, and amplified using rep-primers (REP, ERIC, and $(GTG)_5$). Fingerprinting patterns generated bands in the range of 300-6,000 bp with REP, 150-6,000 bp with ERIC, and 200-1,700 bp with $(GTG)_5$ primers. In UPGMA dendrogram analysis, 14 strains were clustered into three clades (I, II, and III) with all the primers, thus differentiating them at the molecular level. The present study revealed the differentiation of L. citreum strains using rep-PCR.

Analysis of Growth in Intersubspecific Crossing of Mice Using Gompertz Model

  • Kurnianto, E.;Shinjo, A.;Suga, D.
    • Asian-Australasian Journal of Animal Sciences
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    • v.11 no.1
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    • pp.84-88
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    • 1998
  • The aim of this study was to describe growth patterns of mice using Gompertz model. Two distinct types of mice, laboratory mouse $CF_{\sharp1}$ (Mus musculus domesticus) and Yonakuni wild mouse (Yk, Mus musculus molossinus yonakuni) were used. From all possible crosses, there were two parental types and two reciprocal $F_1$ crosses obtained. Individual body weights were measured weekly from birth to ten weeks of age on 321 mice. Standardization to six mice was conducted and only first litters were used. Growth curve parameters were estimated to fit growth data. The results showed that growth among genetic groups were significantly different (p < 0.05) for both sexes, in which parental type of $CF_{\sharp1}$ and Yk had the highest and the smallest values, respectively. Meanwhile, reciprocal $F_1$ crosses were intermediate between parental types. It was concluded that Gompertz model provided and excellent fit for the growth data with a high coefficient determination $(R^2 = 0.999)$.

Geographic Variation of Morphometric Charactera among Three Subspecies of Striped Field Mice, Apodemus agrarius Pallas (Muridae, Rodentia), from Korea (한국산 등줄쥐, Apodemus agrarius Pallas (Muridae, Rodentia), 3아종에 있어서의 형태적 형질들의 지리적 변이)

  • Koh, Hung-Sun
    • The Korean Journal of Zoology
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    • v.29 no.4
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    • pp.272-282
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    • 1986
  • Univariate and multivariate analyses of morphometric characters were performed with samples of three subspecies of striped field mice (Apodemus agrarius coreae, A. agrarius pallescens, and A. agrarius chejuensis). It was found that the samples of A. agrarius chejuensis from Jeju-Do were distintc from those of the other two subspecies from the Korean peninsular, whereas subspecies coreae was similar to subspecies pallescens: it is concluded that A. agrarius pallescens is a synonym of A. agrarius coreae. Further analyses will be needed to clearify the subspecific status of A. agrarius chejuensis.

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Subspecific Status of the Korean Tiger Inferred by Ancient DNA Analysis

  • Lee, Mu-Yeong;Hyun, Jee-Yun;Lee, Seo-Jin;An, Jung-Hwa;Lee, Eun-Ok;Min, Mi-Sook;Kimura, Junpei;Kawada, Shin-Ichiro;Kurihara, Nozomi;Luo, Shu-Jin;O'Brien, Stephen J.;Johnson, Warren E.;Lee, Hang
    • Animal Systematics, Evolution and Diversity
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    • v.28 no.1
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    • pp.48-53
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    • 2012
  • The tiger population that once inhabited the Korean peninsula was initially considered a unique subspecies (Panthera tigris coreensis), distinct from the Amur tiger of the Russian Far East (P. t. altaica). However, in the following decades, the population of P. t. coreensis was classified as P. t. altaica and hence forth the two populations have been considered the same subspecies. From an ecological point of view, the classification of the Korean tiger population as P. t. altaica is a plausible conclusion. Historically, there were no major dispersal barriers between the Korean peninsula and the habitat of Amur tigers in Far Eastern Russia and northeastern China that might prevent gene flow, especially for a large carnivore with long-distance dispersal abilities. However, there has yet to be a genetic study to confirm the subspecific status of the Korean tiger. Bone samples from four tigers originally caught in the Korean peninsula were collected from two museums in Japan and the United States. Eight mitochondrial gene fragments were sequenced and compared to previously published tiger subspecies' mtDNA sequences to assess the phylogenetic relationship of the Korean tiger. Three individuals shared an identical haplotype with the Amur tigers. One specimen grouped with Malayan tigers, perhaps due to misidentification or mislabeling of the sample. Our results support the conclusion that the Korean tiger should be classified as P. t. altaica, which has important implications for the conservation and reintroduction of Korean tigers.

Genetic Relationships among Six Korean Rana Species (Amphibia; Ranidae) Based on the Mitochondrial Cytochrome b Gene

  • Lee, Jung-Eun;Yang, Suh-Yung;Lee, Hei-Yung
    • Animal cells and systems
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    • v.4 no.2
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    • pp.117-121
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    • 2000
  • Genetic relationships among six species of the genus Rana from Korea were investigated by complete nucleotide sequence analyses of mitochondrial cytochrome b gene (1143 bp). Based on Kimura-2-parameter distance, the interspecific sequence differences of cytochrome b gene within the genus Rana were ranged from 7.83% to 25.00%. The genetic distances were 7.83% between R. nigromaculata and R. plancyi, 8.47% between two types of R. rugosa (type A and B), 10.42% between the brown frogs (R. amurensis and R. dybowskii), 16.11% between R. dybowskii types 1 and 2 and 12.36% between pond frogs (R. nigromaculata and R. plancyi) and R. catesbeiana. In the neighbor-joining and parsimony trees, R. catesbeiana was more closely related to pond frogs than brown frogs. R. dybowskii types 1 and 2 were considered to be at a distinct and specific level of differentiation (16.11%), while two types of R. rugosa were suspected to be at a subspecific level (8.47%).

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Taxonomical Study on Four Myotis (vespertilionidae) Species in Korea (한국산 큰수염박쥐류 Myotis (Vespertilionidae) 4종에 대한 분류학적 연구)

  • 윤명희
    • Animal Systematics, Evolution and Diversity
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    • v.6 no.2
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    • pp.173-192
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    • 1990
  • A taxonomic review of four Myotis species (M. formosus tsuensis , M. macrodactylus, M. daubentonii ussuriensis and M. nattereri bombinus) belonging to the Vespertilionidae was carried out. based on the external and skeletal (cranium, mandible and humerus ) morphology. The queston whether M. nattereri inhabiting Korea and eastern Siberia is a good separate subspecies (M. nattereri amurensis ) or a synonym of M. nattereri bombinus has remained unsolved. Through a detaile dexaminatin of Koreaan and Japanese speciemens, the author follows the concept of Wallin (1969) who has regarded M. nattereri amurensis as a synonym for M. nattereri bombinus.

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Taxonomic Study on Two Subspecies of European Grass Snake (Rhabdophis tigrina) in Korea (한국산 유혈목이 (Rhabodophis Tigrina) 2 아종의 분류학적 연구)

  • 백남극;양서영
    • Animal Systematics, Evolution and Diversity
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    • v.2 no.1
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    • pp.79-92
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    • 1986
  • Electrophoretic method is and morphometric analysis were used to examine genetic and phenetic variation among 16 populations of Rhabdophis tigrina and to clarify the subspecific status of R.t.tigrina and R.t. lateralis in Korea. The degree of genic variation based on 23 presume loci was moderate and was similar to those found for other vertebrates. Interpopulation levels of genic differentiation were slight for all populations studied and overall genetic similarities were =0.970. The number of ventral and subcaudal scales showed clinal variation with increasing tendency in numbers toward south . Discriminant function analysis based on six morphometric characters revealed that there were no morphometric differentiation between two subspecies, therefore it was concluded that they were same taxon and R.t. lateralis (Berthold, 1859) should be treated as synonym of R. t. tigrina(Boie, 1826)

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