• 한국환경복원기술학회지
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• 제14권4호
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• pp.11-23
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• 2011

Mountain streams, which are major components of an entire river network, play an important role as the source of water, sediment, coarse and fine organic matter, and nutrients for lowland rivers. Therefore, dynamics and downstream linkages of each compartment of the mountain stream can be essential for watershed management in catchment scale. The dynamics and downstream linkages are understood as a development of step-pool sequences along a river course. Recently, stream restoration after flooding event often employ the development of step-pool sequences in the world. In this paper, we 1) examined the geomorphic characteristics and the role of step-pool sequences in steep mountain streams by reviewing the results of past studies, and 2) introduced the case studies of stream restoration using step-pool sequences, and finally 3) addressed design methods considering geometry and stability of artificial step-pool sequences for stream restoration. Step-pool sequences play an important role not only as roughness with energy dissipation but also as heterogeneity of stream feature for aquatic habitat. Step-pool sequences, even if they are constructed artificially along a stream, may be effective for small stream restoration considering eco-friendly torrent controls. So far the artificial step-pool sequences were employed for mountainous streams, but those would be applied to urban stream.

• 한국수자원학회논문집
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• 제53권1호
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• pp.29-43
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• 2020

본 연구의 목적은 하천복원에 스텝-풀 연속체를 적용하기 위해 기존 연구결과에서 스텝-풀의 기하구조, 형성 과정, 수리 기능, 복원 및 생태 기능과 관련된 사항을 검토하여 설계기준 및 세부설계 모델을 제시하는 것이다. 분석 및 검토결과를 바탕으로 스텝 간격과 하폭의 비, 단위스텝경사와 하상경사의 비, 및 스텝 높이와 입경 비로서 스텝-풀의 구조 및 규모에 대한 설계기준을 제시하였고, 스텝의 구조적 안정성 확보를 위해서는 키스톤 이론을 근거로 전도에 대한 안정성 해석방법을 설계기준으로 제시하였다. 세부설계 개념으로서 스텝-풀의 평면, 종단 및 횡단 구성에 키스톤과 아치스톤에 대한 겹침구조를 적용한 배치 모델을 제안하였다.

• BMB Reports
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• 제38권6호
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• pp.690-694
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• 2005

Transcription termination of the human mitochondrial genome requires specific binding to termination factor mTERF. In this study, mTERF was produced in E. coli and purified by two-step chromatography. mTERF-binding DNA sequences were isolated from a pool of randomized sequences by the repeated selection of bound sequences by gel-mobility shift assay and polymerase chain reaction. Sequencing and comparison of the 23 isolated clones revealed a 16-bp consensus sequence of 5'-GTG$\b{TGGC}$AGANCCNGG-3' in the light-strand (underlined residues were absolutely conserved), which nicely matched the genomic 13-bp terminator sequence 5'-$\b{TGGC}$AGAGCCCGG-3'. Moreover, mTERF binding assays of heteroduplex and single-stranded DNAs showed mTERF recognized the light strand in preference to the heavy strand. The preferential binding of mTERF with the light-strand may explain its distinct orientation-dependent termination activity.

• 한국생물공학회:학술대회논문집
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• 한국생물공학회 2003년도 생물공학의 동향(XIII)
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• pp.815-820
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• 2003

A huge database resulted from whole genome sequencing has provided a possibility of new information that is likely to extent the scope and thus changes the way of approach for the functional assigning of putative open reading frames annotated by whole genome sequence analyses. These are mainly realized by ease, one-step identification of putative genes using genomics or proteomics tools. A major challenge remained in biotechnology may translate these informations into better ways to screen or select a gene as a representative sequence. Further attempts to mine the related whole genes or partial DNA fragment from whole genome treasure, and then the incorporation of these sequences into a representative template, will result in the use of putative genes that can be translated into functional proteins or allowed the generation of new lineages as a valuable pool. Such screens enable rapid biochemical analysis and easy isolation of the target activity, thereby accelerating the screening of novel enzymes from the expanded library with related sequences. Information-based PCR amplification of whole genes and reconstitution of functional DNA fragments will provide a platform for expanding the functional spaces of potential enzymes, especially when used mixed- or metagenome as gene resources.

• Biomolecules & Therapeutics
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• 제26권3호
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• pp.282-289
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• 2018

Melanin is a pigment produced from tyrosine in melanocytes. Although melanin has a protective role against UVB radiation-induced damage, it is also associated with the development of melanoma and darker skin tone. Tyrosinase is a key enzyme in melanin synthesis, which regulates the rate-limiting step during conversion of tyrosine into DOPA and dopaquinone. To develop effective RNA interference therapeutics, we designed a melanin siRNA pool by applying multiple prediction programs to reduce human tyrosinase levels. First, 272 siRNAs passed the target accessibility evaluation using the RNAxs program. Then we selected 34 siRNA sequences with ${\Delta}G{\geq}-34.6kcal/mol$, i-Score value ${\geq}65$, and siRNA scales score ${\leq}30$. siRNAs were designed as 19-bp RNA duplexes with an asymmetric 3' overhang at the 3' end of the antisense strand. We tested if these siRNAs effectively reduced tyrosinase gene expression using qRT-PCR and found that 17 siRNA sequences were more effective than commercially available siRNA. Three siRNAs further tested showed an effective visual color change in MNT-1 human cells without cytotoxic effects, indicating these sequences are anti-melanogenic. Our study revealed that human tyrosinase siRNAs could be efficiently designed using multiple prediction algorithms.