• Journal of the Korean Society of Environmental Restoration Technology
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• v.14 no.4
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• pp.11-23
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• 2011

Mountain streams, which are major components of an entire river network, play an important role as the source of water, sediment, coarse and fine organic matter, and nutrients for lowland rivers. Therefore, dynamics and downstream linkages of each compartment of the mountain stream can be essential for watershed management in catchment scale. The dynamics and downstream linkages are understood as a development of step-pool sequences along a river course. Recently, stream restoration after flooding event often employ the development of step-pool sequences in the world. In this paper, we 1) examined the geomorphic characteristics and the role of step-pool sequences in steep mountain streams by reviewing the results of past studies, and 2) introduced the case studies of stream restoration using step-pool sequences, and finally 3) addressed design methods considering geometry and stability of artificial step-pool sequences for stream restoration. Step-pool sequences play an important role not only as roughness with energy dissipation but also as heterogeneity of stream feature for aquatic habitat. Step-pool sequences, even if they are constructed artificially along a stream, may be effective for small stream restoration considering eco-friendly torrent controls. So far the artificial step-pool sequences were employed for mountainous streams, but those would be applied to urban stream.

• Journal of Korea Water Resources Association
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• v.53 no.1
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• pp.29-43
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• 2020

The purpose of this study is to propose the design criteria and detailed design model by reviewing the issues related to geometry, formation process, destruction process, hydraulic function, restoration and ecological function of the step-pool from the existing research results, to apply the step-pool sequences to river restoration. Based on the analysis and review results, the design criteria for the structure and size of the step-pool are presented as ratio of the step spacing and the channel width, ratio of the unit step slope and channel slope, and ratio of step height and the particle size. To ensure structural stability of the step, stability analysis method of overturning based on the keystone theory was proposed as a design criterion. As a detailed design concept, a layout model was proposed by applying the imbricating structure of keystones and arch stones to the planar, longitudinal and transverse configurations of the step-pool.

• BMB Reports
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• v.38 no.6
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• pp.690-694
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• 2005

Transcription termination of the human mitochondrial genome requires specific binding to termination factor mTERF. In this study, mTERF was produced in E. coli and purified by two-step chromatography. mTERF-binding DNA sequences were isolated from a pool of randomized sequences by the repeated selection of bound sequences by gel-mobility shift assay and polymerase chain reaction. Sequencing and comparison of the 23 isolated clones revealed a 16-bp consensus sequence of 5'-GTG$\b{TGGC}$AGANCCNGG-3' in the light-strand (underlined residues were absolutely conserved), which nicely matched the genomic 13-bp terminator sequence 5'-$\b{TGGC}$AGAGCCCGG-3'. Moreover, mTERF binding assays of heteroduplex and single-stranded DNAs showed mTERF recognized the light strand in preference to the heavy strand. The preferential binding of mTERF with the light-strand may explain its distinct orientation-dependent termination activity.

• 한국생물공학회:학술대회논문집
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• 2003.10a
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• pp.815-820
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• 2003

A huge database resulted from whole genome sequencing has provided a possibility of new information that is likely to extent the scope and thus changes the way of approach for the functional assigning of putative open reading frames annotated by whole genome sequence analyses. These are mainly realized by ease, one-step identification of putative genes using genomics or proteomics tools. A major challenge remained in biotechnology may translate these informations into better ways to screen or select a gene as a representative sequence. Further attempts to mine the related whole genes or partial DNA fragment from whole genome treasure, and then the incorporation of these sequences into a representative template, will result in the use of putative genes that can be translated into functional proteins or allowed the generation of new lineages as a valuable pool. Such screens enable rapid biochemical analysis and easy isolation of the target activity, thereby accelerating the screening of novel enzymes from the expanded library with related sequences. Information-based PCR amplification of whole genes and reconstitution of functional DNA fragments will provide a platform for expanding the functional spaces of potential enzymes, especially when used mixed- or metagenome as gene resources.

• Biomolecules & Therapeutics
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• v.26 no.3
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• pp.282-289
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• 2018

Melanin is a pigment produced from tyrosine in melanocytes. Although melanin has a protective role against UVB radiation-induced damage, it is also associated with the development of melanoma and darker skin tone. Tyrosinase is a key enzyme in melanin synthesis, which regulates the rate-limiting step during conversion of tyrosine into DOPA and dopaquinone. To develop effective RNA interference therapeutics, we designed a melanin siRNA pool by applying multiple prediction programs to reduce human tyrosinase levels. First, 272 siRNAs passed the target accessibility evaluation using the RNAxs program. Then we selected 34 siRNA sequences with ${\Delta}G{\geq}-34.6kcal/mol$, i-Score value ${\geq}65$, and siRNA scales score ${\leq}30$. siRNAs were designed as 19-bp RNA duplexes with an asymmetric 3' overhang at the 3' end of the antisense strand. We tested if these siRNAs effectively reduced tyrosinase gene expression using qRT-PCR and found that 17 siRNA sequences were more effective than commercially available siRNA. Three siRNAs further tested showed an effective visual color change in MNT-1 human cells without cytotoxic effects, indicating these sequences are anti-melanogenic. Our study revealed that human tyrosinase siRNAs could be efficiently designed using multiple prediction algorithms.