• Title/Summary/Keyword: Species selection

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Mesh selectivity of the drum-shaped pot for starfish Asterina pectinifera in the western coastal waters of Korea (서해안 통발에 대한 별불가사리 (Asterina pectinifera)의 망목 선택성)

  • PARK, Chang-Doo;LEE, Gun-Ho
    • Journal of the Korean Society of Fisheries and Ocean Technology
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    • v.51 no.3
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    • pp.387-395
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    • 2015
  • Starfish, a species of Echinoderm, is widely known as a predator on benthic invertebrate. A series of fishing experiments was carried out in the western coastal waters of Korea from September, 2011 to November, 2012, using the drum-shaped pots of different mesh sizes (17.1, 24.8, 35.3, 39.8, and 48.3 mm) to describe the composition of the catch species and the mesh selectivity of the pot for starfish. Some species including fish, crab, and starfish were caught in the experimental pots. The SELECT (Share Each Length's Catch Total) method was applied to describe the selectivity of the pot for starfish Asterina pectinifera. The master selection curve was estimated to be s(R) = exp(10.358R-4.086) / [1+exp(10.358R-4.086)], where R is the ratio of arm length to mesh size. The relative arm length of 50% retention was 0.395, and the selection range was 0.212. The results should be helpful to understand the relationship between the catch size of starfish and the mesh size of pot.

Animal Breeding: What Does the Future Hold?

  • Eisen, E.J.
    • Asian-Australasian Journal of Animal Sciences
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    • v.20 no.3
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    • pp.453-460
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    • 2007
  • An overview of developments important in the future of animal breeding is discussed. Examples from the application of quantitative genetic principles to selection in chickens and mice are given. Lessons to be learned from these species are that selection for production traits in livestock must also consider selection for reproduction and other fitness-related traits and inbreeding should be minimized. Short-term selection benefits of best linear unbiased predictor methodology must be weighed against long-term risks of increased rate of inbreeding. Different options have been developed to minimize inbreeding rates while maximizing selection response. Development of molecular genetic methods to search for quantitative trait loci provides the opportunity for incorporating marker-assisted selection and introgression as new tools for increasing efficiency of genetic improvement. Theoretical and computer simulation studies indicate that these methods hold great promise once genotyping costs are reduced to make the technology economically feasible. Cloning and transgenesis are not likely to contribute significantly to genetic improvement of livestock production in the near future.

Excellent Strains Selection from Wild Cordyceps spp.(II) (야생동충하초로부터 우량균주선발(II))

  • 방극소;홍경환;조덕현
    • Korean Journal of Plant Resources
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    • v.14 no.2
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    • pp.169-174
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    • 2001
  • Many Cordyceps spp. were collected for excellent strains selection at near Wanju-kun from May to October, 2000. They were identified. As the resulting, They were 2 genera and 4 species. 6 strains were got through 4 species culture. 6 strains are Cordyceps militaris f. albino, C, gracilaides, C. militaris and Isaria japoica. Among them, 4 species used for induction of artifitial fruiting body. 3 strains of them were selected for excellent strains. excellent strains are Cordyceps militaris and Isaria japoica.

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Application of genotyping-by-sequencing (GBS) in plant genome using bioinformatics pipeline

  • Lee, Yun Gyeong;Kang, Chon-Sik;Kim, Changsoo
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.58-58
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    • 2017
  • The advent of next generation sequencing technology has elicited plenty of sequencing data available in agriculturally relevant plant species. For most crop species, it is too expensive to obtain the whole genome sequence data with sufficient coverage. Thus, many approaches have been developed to bring down the cost of NGS. Genotyping-by-sequencing (GBS) is a cost-effective genotyping method for complex genetic populations. GBS can be used for the analysis of genomic selection (GS), genome-wide association study (GWAS) and constructing haplotype and genetic linkage maps in a variety of plant species. For efficiently dealing with plant GBS data, the TASSEL-GBS pipeline is one of the most popular choices for many researchers. TASSEL-GBS is JAVA based a software package to obtain genotyping data from raw GBS sequences. Here, we describe application of GBS and bioinformatics pipeline of TASSEL-GBS for analyzing plant genetics data.

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Excellent Strains Selection from Wild Cordyceps spp.(I) (야생동충하초로부터 우량균주선발 (I))

  • 방극소;조덕현
    • Korean Journal of Plant Resources
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    • v.13 no.3
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    • pp.155-161
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    • 2000
  • Many Cordyceps rpp were collected for excellent strains selection at Mts. Moak, Younsuk and Daea-ree herbarium near Wanju-kun from mid May to October,1999. They were identified as the resulting 2 genera and 5 species, 10 strains were got through 5 species culture. Among them 4 species used for induction of artifitial fruiting body and 6 strains of them were selected to excellent strains: Cordyceps militaris (99-0007), Isaria japonica (99-0001, 99-0002, 99-0003), Cordyceps soborifera (99-0008), Cordyceps kanzashiana(99-0009).

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Development of Species Distribution Models and Evaluation of Species Richness in Jirisan region (지리산 지역의 생물종 분포모형 구축 및 종풍부도 평가)

  • Kwon, Hyuk Soo;Seo, Chang Wan;Park, Chong Hwa
    • Journal of Korean Society for Geospatial Information Science
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    • v.20 no.3
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    • pp.11-18
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    • 2012
  • Increasing concern about biodiversity has lead to a rise in demand on the spatial assessment of biological resources such as biodiversity assessment, protected area selection, habitat management and restoration in Korea. The purpose of this study is to create species richness map through data collection and modeling techniques for wildlife habitat assessment. The GAM (Generalized Additive Model) is easy to interpret and shows better relationship between environmental variables and a response variable than an existing overlap analysis and GLM (Generalized Linear Model). The study area delineated by a large watershed contains Jirisan national park, Mt. Baekun and Sumjin river with three kinds of protected areas (a national park, a landscape ecology protected area and an otter protected area). We collected the presence-absence data for wildlife (mammals and birds) using a stratified random sampling based on a land cover in the study area and implemented natural and socio-environmental data affecting wildlife habitats. After doing a habitat use analysis and specifying significant factors for each species, we built habitat suitability models using a presence-absence model and created habitat suitability maps for each species. Biodiversity maps were generated by taxa and all species using habitat suitability maps. Significant factors affecting each species habitat were different according to their habitat selection. Although some species like a water deer or a great tit were distributed at the low elevation, most potential habitats for mammals and birds were found at the edge of a national park boundary or near a forest around the medium elevation of a mountain range. This study will be used for a basis on biodiversity assessment and proected area selection carried out by Ministry of Environment.

Historical Documents on Proper Tree Selection System during the Periods of Chosun Dynasty and under the Japanese Rule (조선 및 일제시대의 적지적수 사료 발굴)

  • Kang, Young-Ho
    • The Korean Journal of Ecology
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    • v.26 no.6
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    • pp.341-347
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    • 2003
  • Historical Documents on Proper Tree Selection System of Korea were collected in Japan and introduced in this review. Products of some pine species and fruit were used for laying a tribute to Kings in the Chosun dynasty. In this review, some case studies and implementation of proper tree selection system during the period of Japanese rule, the atlas of climatically favourable regions for the species of trees and bamboos in Korean peninsular, and the test results on regional afforestation, tree selection and proper tree selection of fast growing trees were introduced. Of these documents, especially, the atlas of climatically favourable regions of trees and bamboos growing in Korean peninsular is considered as a valuable document. It tis expected that these historical documents on proper tree selection system might be use as references for the researches on indigenous forest, forest resources development, afforestation of fire damaged areas, and the restoration project of North Korea by the time of reunification of Korea.

Analysis of Suitable Breeding Sites for Endangered species Black-faced Spoonbill(Platalea minor) using spatial data (공간자료를 활용한 멸종위기종 저어새(Platalea minor)의 적합 번식지 분석 연구)

  • Jung, Jin-Woo;Kim, Sunryoung;Yoon, Young-Jun;Tho, Jae-Hwa;Han, Yeong-Deok;Jang, Rae-Ha
    • Journal of the Korean Society of Environmental Restoration Technology
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    • v.26 no.6
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    • pp.189-203
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    • 2023
  • This study analyzed potential breeding sites for black-faced spoonbills on 70 non-breeding, uninhabited islands in Incheon, Korea, in order to suggest potential breeding sites for black-faced spoonbills, whose breeding population has recently been increasing. By comparing the environmental characteristics of breeding and non-breeding areas identified through a literature search, we developed a discriminant to identify potential breeding areas for black-faced spoonbills. Among a total of eight environmental variables(Island area, distance from land, distance to mudflat, distance to rice field, distance to sea route, depth of water, mudflat area, rice field area), the variables that influenced the selection of breeding sites for black-faced spoonbills were average water depth, tidal flat area, and paddy field area. As a result of discriminant analysis of breeding islands using these variables, the accuracy was found to be quite high at 80%. As a result of applying the developed discriminant to non-breeding islands located in the Incheon region, a total of 9 islands(Yongrando, Goseokdo, Beolyeom, Joreumseom, Goeriseom, Hambakdo, Moido, Bigajido, Ahyeom) were identified as potential breeding grounds for spoonbills. The research results can be used as basic data for future management of black-faced spoonbill breeding sites and selection of alternative habitats.

Effects of Ectomycorrhizal Fungi on Growth of Seedlings of Pinus densiflora

  • Sim, Mi-Yeong;Eom, Ahn-Heum
    • Mycobiology
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    • v.34 no.4
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    • pp.191-195
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    • 2006
  • This study was conducted to investigate the different effects of ectomycorrhizal fungal (ECMF) species on the growth of seedlings of Pinus densiflora, and the effects of ECMF diversity on plant productivity. A total of five species of ECMF were isolated from root tips of pine seedlings collected from Mt. Songni and used as inocula. Pots containing pine seedlings were inoculated with either a single ECMF species or a mixture of five ECMF species. All of the seedlings formed ECM on their roots except for the control plants. The pine seedlings' growth responses varied by the different ECMF species. Also, pine seedlings inoculated with a mixture of five ECMF species showed the highest growth response. The results of the study suggest that the colonization of diverse species of ECMF will increase plant productivity, and the selection of suitable ECMF species could be an important factor for plant growth.

Nest Box Preference by Secondary Cavity-Nesting Birds in Forested Environments

  • Choi, Chang-Yong;Nam, Hyun-Young;Lee, Eun-Jae;Chung, Ok-Sik;Park, Yong-Su;Lee, Jong-Koo;Hyun, Jee-Yun;Lee, Woo-Shin
    • Journal of Ecology and Environment
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    • v.30 no.1
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    • pp.49-56
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    • 2007
  • We placed and monitored 2,137 nest boxes to determine how the size of the entrance hole and the box placement influenced nest box selection by secondary cavity-nesting birds and to derive recommendations for the use of nest boxes for management of cavity-nesting birds in forested environments. A total of 566 pairs of seven bird species used the nest boxes from 1997 to 2006, 562 of which were secondary cavity-nesters. Sympatric tits such as varied tits (Parus varius), great tits (P. major), and marsh tits (P. palustris) were common breeding birds in nest boxes, and showed clear preferences for 4.0 cm, 3.5 cm and 3.0 cm nest holes, respectively. Tree sparrows (Passer montanus) and Eurasian nuthatches (Sitta europaea) preferred 4 cm and 3.5 cm holes, respectively. We did not detect selection for the directional orientation for the entrance hole, but the birds appeared to avoid nest boxes that faced steep or gentle upward slopes and those less than 1.8 m from the ground. These results are probably related to avoidance of disturbance and predation. We suggest that diverse species can be supported by the placement of nest boxes with entrance holes of various sizes and that specific species can be targeted by selecting the hole sizes preferred by those species. To attract secondary cavity-nesters, managers should avoid placing nest boxes close to the ground and facing hills. This study also suggests that careful selection and placement of nest boxes is needed to avoid biases in research using nest boxes.