• Journal of Forest and Environmental Science
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• v.27 no.1
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• pp.17-22
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• 2011

Based upon the vegetation data of woody plants by plot sampling method in the natural deciduous forest of Mt. Jeombong, the study was carried out to examine importance value, rank abundance curve, and species abundance curve, and comparatively evaluate seven different species diversity indices for Shannon-Wiener index, Simpson index, McIntosh index, Log series, Margalef index, Berger-Parker index, and species richness, according to topographic positions. The minimal area which meant only few more species were increased was 3.48 ha in total. The dominant species of valley were Carpinus cordata, Acer pseudo-sieboldianum, Quercus mongolica, Acer mono, and Abies holophylla, and the dominant species of mid-slope were Quercus mongolica, Acer pseudo-sieboldianum, Carpinus cordata, Tilia amurensis, and Fraxinus rhynchophylla. Moreover, the dominant species of ridge were Quercus mongolica, Acer pseudo-sieboldianum, Tilia amurensis, Fraxinus rhynchophylla, and Acer mono. According to rank abundance curve and species abundance curve, species evenness was also low. All of Log series, species richness, Margalef, and Shannon-Wiener index discriminated that valley had the highest diversity, and ridge had the lowest diversity; but, Simpson index, McIntosh index, and Berger-Parker index represented that mid-slope had the highest diversity, and ridge had the lowest diversity. Uniquely, in Berger-Parker index, mid-slope was the higher value than total.

• Journal of Environmental Impact Assessment
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• v.19 no.6
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• pp.547-552
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• 2010

The theory of island biogeography has influenced strongly on the conservation and management issues of species diversity in the islands. The theory has not limited to islands in the ocean, but expanded to isolated and fragmented areas in the forests and urban. This study has a rare opportunity to explore the species diversity and abundance of birds in the islands of Korea. A total of 151 islands in the west and south areas in the Korean peninsula were examined. The number of species and the area of islands were highly significant (P<0.000) and the number of species and the distance from the mainland showed not so strong relationship. This indicated that bird species diversity has more influenced by the size of the islands not the distance. This can be from the study species of birds that can fly long distance, and also natural characteristics of migratory and resident status. Species-area curve showed that the z-value was 0.21 indicating the area and the bird species are strongly correlated. The long-term monitoring of bird species presence in the islands should be followed for a proper management plan.

• Journal of Forest and Environmental Science
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• v.38 no.2
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• pp.90-101
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• 2022

The study aims to assess composition, diversity and population indices of natural regeneration of woody species in Jebel El Gerrie forest reserve, Blue Nile State, Sudan. We conducted field work between December 2018 and January 2019. We used random sampling to collect vegetation data in the forest where we made a total of 90 circular sample plots (radius 17.84 m) and distributed them proportionally to the area of each of the four density-based vegetation classes of the forest i.e. high density (C1), medium density (C2), low density (C3) and crop land (C4). In each sample plot we identified all regenerating tree species and counted their regeneration frequencies. We calculated ecological metrics of regeneration frequency, density, abundance, richness, evenness, diversity and importance value index (IVI) and drew abundance rank curve. Results revealed that out of fifteen mature tree species present, natural regeneration of 8 species, which belong to 6 families, was observed. The relatively most frequently naturally regenerating and abundant species were Anogeissus leiocarpa and Combretum hartmannianum. Richness, evenness and diversity of regenerating species were 1.33, 0.82 and 1.7, respectively. One-way ANOVA (α=0.05) of mean regeneration densities disclosed that there were significant differences (F_3,86=16.77, p=0.000) between C2 & C3 (p=0.000) and C2 & C4 (p=0.000). While regeneration of seven tree species were absent, two, two and four species were of good, poor and fair regeneration status, respectively. A comparison of mean density of natural regeneration with that of parent trees reflects a poor regeneration status of the forest. The study provides empirical results on the regeneration status of species and signifies the need for management interventions for species conservation and restoration, maintenance of biodiversity and sustainable production.

• Journal of Forest and Environmental Science
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• v.38 no.3
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• pp.174-183
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• 2022

The study aims to examine population indices of mature trees in Jebel Elgarrie forest, Blue Nile State, Sudan. We used remote sensing techniques to stratify the forest into vegetation classes depending on tree density. We distributed 97 circular sample plots (0.1 ha) proportionally to the area of the vegetation classes. In each sample plot we identified, counted and recorded all mature trees (DBH ≥10 cm). We calculated frequency, density, abundance, richness, evenness and diversity for each species and we drew abundance rank curve of mature trees. We used One-Way ANOVA to test for differences (α=0.05) in mean density (No./ha) of mature trees between vegetation classes. Results revealed that the forest was conveniently sub-divided into high density (C1), medium density (C2), low density (C3) and bare farm land (C4) classes. We identified fifteen tree species that belong to 10 families and 14 genera. Combretaceae and Fabaceae were the common families while Anogeissus leiocarpa was the most frequently occurring species. While species diversity varied between vegetation classes, diversity of the forest as a whole is low. While mean density of mature trees in C1, C2, C3 and C4 it was 100, 74, 10, and 0, respectively, it was 54 for the whole forest indicating low stocking, Following One-Way ANOVA, multiple comparisons revealed significant differences in mean density of mature trees between C1 & C3 and C2 & C3. The study provided empirical results on population indices of mature tree species, which would be of importance for successful management and conservation of the forest.

• Parasites, Hosts and Diseases
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• v.61 no.3
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• pp.272-281
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• 2023

Chigger mites are the vector of scrub typhus. This study estimates the infestation status and ecological characteristics of chiggers on the chestnut white-bellied rat Niviventer fulvescens in Southwest China between 2001 and 2019. Chiggers were identified under the microscope, and infestation indices were calculated. The Preston's log-normal model was used to fit the curve of species abundance distribution. A total of 6,557 chiggers were collected in 136 of 342 N. fulvescens rats, showing high overall infestation indices (prevalence=39.8%, mean abundance=19.2, mean intensity=48.2) and high species diversity (S=100, H'=3.0). Leptotrombidium cangjiangense, Neotrombicula japonica, and Ascoschoengastia sifanga were the three dominant chigger species (constituent ratio=42.9%; 2,736/6,384) and exhibited an aggregated distribution among different rat individuals. We identified 100 chigger species, with 3 of them (Leptotrombidium scutellare, Leptotrombidium wenense, and Leptotrombidium deliense) as the main vectors of scrub typhus in China and nine species as potential vectors of this disease. Disease vector occurrence on N. fulvescens may increase the risk of spreading scrub typhus from rats to humans. Chigger infestation on N. fulvescens varied significantly in different environments. The species abundance distribution showed a log-normal distribution pattern. The estimated number of chigger species on N. fulvescens was 126 species.

• Korean Journal of Environment and Ecology
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• v.35 no.5
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• pp.490-502
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• 2021

This study was conducted to analyze the current status of fish fauna and characteristics of the fish community according to the habitat of Woraksan National Park, Korea. The spatially balanced sampling selected 20 stations from major streams of Woraksan National Park, and three surveys were conducted in each season. The physical environments of the habitat were mostly mountain streams (Aa), with large stones and gravels scattered over the stream. The average altitude of the habitat was 304.4 m, and the average depth of water was 40.3 cm, being less than 1 m in most cases, and the river water level was distributed from 3rd to 5th streams. The principal component analysis of the physical environmental factors by habitat showed that the substrate properties differed according to the altitude. The survey identified a total of 2,183 individuals in 16 species belonging to 7 families. The dominant species was Zacco koreanus(86.2%), and the subdominant species was Rhynchocypris oxycephalus(3.8%). Pseudopungtungia tenuicorpa, classified as the endangered wildlife II, was the first endangered legally protected species found in this survey. Analysis of the rank abundance curve model in the fish community showed the Zipf model at 9 out of 20 points, the Lognormal model in 3 points, and the Preemption model in 4 points. The remaining 4 habitats showed only one species and were not analyzed. The canonical correspondence analysis of 20 stations and fish species was performed to understand the characteristics of the fish community according to environmental factors. The fish communities were divided according to differences in habitat environment by the altitude.

• The Korean Journal of Applied Statistics
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• v.34 no.6
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• pp.945-956
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• 2021

In this study, we considered the algorithm of Legendre and Legendre (2012), which derives canonical correspondence analysis from weighted principal component analysis. And, it was proved that the canonical correspondence analysis based on the weighted principal component analysis is exactly the same as Ter Braak's (1986) canonical correspondence analysis based on the Gaussian response model. Ter Braak (1986)'s canonical correspondence analysis derived from a Gaussian response curve that can explain the abundance of species in ecology well uses the basic assumption of the species packing model and then conducts generalized linear model and canonical correlation analysis. It is derived by way of binding. However, the algorithm of Legendre and Legendre (2012) is calculated in a method quite similar to Benzecri's correspondence analysis without such assumptions. Therefore, if canonical correspondence analysis based on weighted principal component analysis is used, it is possible to have some flexibility in using the results. In conclusion, this study shows that the two methods starting from different models have the same site scores, species scores, and species-environment correlations.

• Korean Journal of Environment and Ecology
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• v.28 no.4
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• pp.432-441
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• 2014

April, 2005 to October, 2013. The collected species during the survey period were 17 species belonging to 6 families. Dominant species was Zacco koreanus(Relative abundance 59.9%) and subdominant species Pungtungia herzi(8.5%). Korea endemic species were 12, including Coreoleuciscus splendidus. The species of Hemibarbus mylodon was identified as natural monument, and Pseudopungtungia tenuicorpa and Gobiobotia brevibarba were endangered species. Water quality assessment of Gapyeong Stream, had lately maintained the rating of "very good" for nine years, based on the Ministry of the Environment standards notice. It was found that there was a tendency for populations which is Coreoperca herzi carnivorous species decreases, increases omnivorous species Zacco platypus. As a result of community analysis, dominant index was 0.58~0.86, diversity index was 0.94~1.77 and richness index was 0.99~2.39. As a result of using the Rarefaction curve, were analyzed occurrence species expected each year, number of species is estimated from a sample of 151 individuals, up to 12(2005) was at least 5(2007) species. The regression coefficient (b) in relation to length-weight on Z. koreanus population were annual average $3.29{\pm}1.11$, condition factor slope $0.0034{\pm}0.0021$, which maintained good growth condition and stabilized population.

• Korean journal of applied entomology
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• v.48 no.4
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• pp.439-445
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• 2009

Species richness (number of species) of the butterfly community in the Gwangneung forest, Korea, was estimated using data of the long-term butterfly monitoring, which had been carried out 291 times in the Korea National Arboretum or forest area of Gwangneung from 1998 to 2008. Abundance of each butterfly species was monitored using the line-transact method. In the present study, 13,333 butterflies belonging to 112 species were observed. Species accumulation curve and species richness was obtained using a software, EstimateS. The species accumulation curve shows an increase tendency even at 291 survey times, implying the possibility of the presence of a few unfound species. However, values of species richness estimated by the seven estimators were stabilized around 240-250 survey times. Species richness estimated by the estimators ranged from 120 species to 141 species with 128 species in average. However, the figure estimated by the previous studies since 1958 was 148 species. We estimated the reasonable scale of species richness on the base of recent analysis on the change of butterfly species. Species richness of the Korea National Arboretum was higher than that of natural forest and of plantation. However, species richness of butterfly was not different between natural forest and plantation. It is likely that increase of grasslands and habitat diversity in arboretum led to the increase of species richness of butterfly community.

• Bulletin of the Korean Chemical Society
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• v.35 no.4
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• pp.1133-1138
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• 2014

Ultrahigh performance liquid chromatography-electrospray ionization-tandem mass spectrometry (UPLC-ESI- MS/MS) provides a high-speed method to screen a large number of samples for small molecules with specific properties. In this study, UPLC-ESI-MS/MS with multiple reaction monitoring (MRM) was employed to screen urinary phospholipid (PL) content for biomarkers of prostate cancer. From lists of urinary PLs structurally identified using nanoflow LC-ESI-MS/MS, 52 PL species were selected for quantitative analysis in urine samples between 22 cancer-free urologic patients as controls and 45 prostate cancer patients. Statistical treatment of data by receiver operating characteristic (ROC) analysis yielded 14 PL species that differed significantly in relative concentrations (area under curve (AUC) > 0.8) between the two groups. Among PLs present at higher levels in prostate cancer urine, phosphatidylcholines (PCs) and phosphatidylinositols (PIs) constituted the major head group PLs (3 PCs and 7 PIs). For technical reasons, PL species of low abundance may be underrepresented in data from UPLC-ESI-MS/MS performed in MRM mode. However, the proposed method enables the rapid screening of large numbers of plasma or urine samples in the search for biomarkers of human disease.