• Fisheries and Aquatic Sciences
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• v.26 no.9
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• pp.548-557
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• 2023

The purposes of this research were to identify fish species using DNA barcodes or partial sequences of cytochrome b (Cytb) and to assess the diversity of fish in the Mae Tam reservoir, Phayao province, Thailand. Fish samples were collected 3 times, during the winter, summer, and rainy seasons, from 2 sampling sites using gillnets with 3 mesh sizes (30, 50, and 70 mm). A total of 34 representative samples were classified into 12 species, 7 families and 6 orders by morphological- and DNA barcoding-based identifications. However, one cichlid species, Cichlasoma trimaculatum, could only be identified using DNA barcoding. Family Cyprinidae had the greatest diversity, 50.00%. The diversity, richness and evenness indices ranged from 0.43-0.65, 0.64-1.46, and 0.27-0.40, respectively, indicating that fish diversity at both sampling sites was relatively low. A comparison of the catch per unit effort (CPUE) with 3 different mesh sizes found that the 50 mm mesh size was the best (474.80 ± 171.56 g/100 m²/night), followed by the 70 mm (417.41 ± 176.24 g/100 m²/night) and 30 mm mesh sizes (327.88 ± 115.60 g/100 m²/night). These results indicate that DNA barcoding is a powerful tool for species identification. Our data can be used for planning the sustainable management of fisheries resources in the Mae Tam reservoir.

• Journal of Ecology and Environment
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• v.35 no.4
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• pp.259-267
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• 2012

Biomass changes, net primary production and transfer dynamics of dry matter in four subtropical humid montane grasslands at Ebbenadu, Korakundah, Thiashola and Wenlockdown in Nilgiri Biosphere Reserve (NBR), the Western Ghats, India, were investigated. Despite the early report of a higher density and dominance of $C_4$ species over $C_3$ species in these grasslands, no functional study of matter production had previously been carried out. Therefore, in order to determine the roles played by these two groups of species, the present study was attempted. The study revealed that the dry matter and net primary production contributed by $C_4$ species were much greater than those of its $C_3$ counterpart in all the grasslands. The turnover rate of aboveground dry matter for both $C_3$ and $C_4$ species was generally rapid, whereas it was slow for belowground parts, and litter components of $C_3$ and $C_4$ species together. In all grasslands, generally about 60% and 10% of the input were channeled to aboveground and belowground parts, respectively, by the $C_4$ species, whereas the $C_3$ species transferred only about 22% and 8% of dry matter to aboveground and belowground parts, respectively. The total disappearance of dry matter was 2.73, 2.10, 3.19, and $1.96\;g\;m^{-2}\;day^{-1}$ in Ebbenadu, Korakundah, Thiashola and Wenlockdown grasslands, which was 48.83%, 44.30%, 54.81%, and 41.09% of the total input, respectively, in these grasslands. This resulted in a considerable surplus dry matter production in all the grasslands studied. This balance sheet of dry matter in community function indicates that all the four studied grasslands were supporting the existing wild animals adequately in terms of pasture supply. The study further revealed that the stronger establishment of $C_4$ species rather than their $C_3$ counterparts, in terms of higher density and dominance, has driven them to play major roles in matter dynamics and system transfer functions in all the four grasslands studied. This fact evidenced that pasture from $C_4$ species for wild animals was determined to be higher in comparison to that of $C_3$ species.

• Journal of Environmental Impact Assessment
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• v.24 no.1
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• pp.35-50
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• 2015

The purposes of this study are to apply species distribution modeling in urban management planning for habitat conservation in non-urban area and to provide a detailed classification method for management zone. To achieve these objectives, Species Distribution Model was used to generate species richness and then to compare with the results from land suitability assessment. 59 species distribution models were developed by Maxent. This study used 15 model variables (5 topographical variables, 4 vegetation variables, and 6 distance variables) for Maxent models. Then species richness was created by sum of predicted species distributions. Land suitability assessment was conducted with criteria from type I of "Guidelines for land suitability assessment". After acquiring evaluation values from species richness and land suitability assessment, the results from these two models were compared according to the five grades of classification. The areas with the identical grade in Species richness and land suitability assessment are categorized and then compared each other. The comparison results are Grade1 10.92%, Grade2 37.10%, Grade3 34.56%, Grade4 20.89% and Grade5 1.73%. Grade1 and Grade5 showed the lowest agreement rate. Namely, development or conservation grade showed high disagreement between two assessment system. Therefore, the areas located between urban, agriculture, forest, and reserve have a tendency to change easily by development plans. Even though management areas are not the core area of reserve, it is important to provide a venue for species habitat and eco-corridor to protect and improve biodiversity in terms of landscape ecology. Consequently, adoption of species richness in three levels of management area classification such as conservation, production, planning should be considered in urban management plan.

• Korean Journal of Environmental Biology
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• v.23 no.2 s.58
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• pp.157-162
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• 2005

To clarify the key characteristics of Korean brown frogs (R. dybowskii, R. huanrenesis and R. amurensis coreana), this study employed a morphological and morphometrical comparisons among brown frogs found in Korea and Japanese endemic species, R. tsushimensis. As a result, it was considered that the key characteristics were the shape of the finger and toe tips, the markings of the lower jaw, the presence or absence of an upper lip line, the development of toe webbing, and the shape of the vomerine teeth series by morphological comparisons of brown frogs. Also, there were significant differences in tympanum diameters and foot lengths of the four species of brown frogs. Therefore, a comparison between morphological and morphometric characters is an effective way to clarify the identification of brown frogs.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.27 no.5
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• pp.659-672
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• 1994

Four simple plotting techniques using the distribution of individuals among species were applied and the results discussed to evaluate the methods for detecting organic pollution-induced perturbation in marine benthic communities in Chinhae Bay, Korea: Rarefaction method, Abundance-Biomass Comparison method, Log-Normal Distribution method and Rank-Frequency Diagram method. Their distribution curves offered more information on the community structure than other frequently used diversity indices and distinguished clear evidence of an effect of environmental pollution with gradient. However, the Abundance-Biomass Comparison method could not be considered applicable due to the presence of larger slowly growing K-strategists in a polluted area of the inner Chinhae Bay, Korea.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.7 no.1
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• pp.20-31
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• 2002

This study was carried out to investigate the composition and the distribution of the benthic polychaetous communities in Deugryang Bay, semi-enclosed bays, on the southern coast of Korea and to deduce temporal changes in community with the comparison of the past studies. In Deugryang Bay, benthic polychaetous community structure was investigated on the base of the samples from 98 stations in 1996 and 1997. The main facies of surface sediment was clayey silt. The overall benthic macrofaunal density was 871 ind./m$^{2}$. The density was highest in the middle part of the bay because Musculus senhousia (Bivalvia) and cumaceans (Crustacea) had their highest densities in some stations. Benthic polychaetes were comprised of 100 species with a mean density of 138 ind./m$^{2}$. Their abundances were higher in the inner bay, in the middle bay, and in the mouth of bay, but poor community structures were established in the whole bay. The dominant species over 1.0 percentage were composed of the total 21 species, and they occupied 78.3% of the total abundance of the benthic polychaetes. The most dominant species was Lumbrineris longifolia (9.3%), followed by Eteone longa (7.3%), Heteromastus filifomis (7.1%), Sternaspis scutata (6.1%). From the cluster analysis, the study area could be divided into three station groups. Station group AI was located in the inner bay and in the shallow coastal region, and its most dominant species was Heteromastus filiformis. At the station group AII in the mouth of bay and in some channel region, its most dominant species were Lumbrineris longifolia and Eteone longa. And at the station group B located in middle part of the bay, the most dominant specis was Sternaspis scutata. In comparison with previous studies, the benthic polychaetous community experienced great change in the view of species number, density and dominant species. The dominant species were Sternaspis scutata and Eteone longa, but their densities declined greatly. Instead of these species, Lumbrineris longifolia and Heteromastus filiformis, known as the potential organic enrichment indicator species, appeared to the new dominant species even if their low densities. These facts mean that Deugryang Bay was maintained yet as little organic enriched area compared to other bays on the coast of Korea, but needed some caution of marine environmental management.

• ALGAE
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• v.33 no.1
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• pp.1-19
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• 2018

Members of the family Parviluciferaceae (Alveolata, Perkinsozoa) are the well-known dinoflagellate parasitoids along with Amoebophrya ceratii species complex and parasitic chytrid Dinomyces arenysensis and contain six species across three genera (i.e., Parvilucifera infectans, P. sinerae, P. rostrata, and P. corolla, Dinovorax pyriformis, and Snorkelia prorocentri) so far. Among Parvilucifera species, the two species, P. infectans and P. sinerae, are very similar or almost identical each other morphologically and genetically, thereby make it difficult to distinguish between the two. The only main difference between the two species known so far is the number of sporangium wall (i.e., 2 layers in P. infectans vs. 3 layers in P. sinerae). During sampling in Masan bay, Korea during the spring season of 2015, the dinoflagellate Akashiwo sanguinea cells infected by the parasite Parvilucifera were observed and this host-parasite system was established in culture. Using this culture, its morphological and ultrastructural features with special emphasis on the variation in the number of sporangium wall over developmental times, were investigated. In addition, the sequences of rDNA regions and ${\beta}-tubulin$ genes were determined. The result clearly demonstrated that the trophocyte at 36 h was covered with 4 layers, and then outer layer of the sporocyte gradually degraded over time, resulting in wall structure consisting of two layers, with even processes being detached from 7-day-old sporangium with smooth surface, indicating that the difference in the number of layers seems not to be an appropriate ultrastructural character for distinguishing P. infectans and P. sinerae. While pairwise comparison of the large subunit rDNA sequences showed 100% identity among P. infectans / P. sinerae species complex, genetic differences were found in the small subunit (SSU) rDNA sequences but the differences were relatively small (11-13 nucleotides) compared with those (190-272 nucleotides) found among the rest of Parvilucifera species (P. rostrata and P. corolla). Those small differences in SSU rDNA sequences of P. infectans / P. sinerae species complex may reflect the variations within inter- strains of the same species from different geographical areas. Taken together, all morphological, ultrastructural, and molecular data from the present study suggest that they are the same species.

• Korean Journal of Environmental Biology
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• v.30 no.4
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• pp.319-327
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• 2012

This paper was the result of investigation on fish fauna of natural estuary at Seomjin River, Korea. The total number of fish species collected in this study was 68 species belonging to 26 families. Dominant species in number was Acheilognathus majusculus (relative abundance: 37.4%), subdominant was Tribolodon hakonensis (10.5%). There were seven migrating fishes including Anguilla japonica and T. hakonensis. There were twenty Korean endemic species including Acheilognathus koreensis and Acheilognathus somjinensis. Thirty five species belonging to eight families were collected in upper part of river that dominant species was A. majusculus (38.2%). Thirty seven species were collected in lower part of river that dominant species was A. majusculus (48.5%). Thirty four species were collected in near estuary that dominant species was T. hakonensis (42.6%). In the comparison result of condition factor for several main species populations of Seomjin River were better than Nagdong River populations having estuary barrage. It was considered that almost fish populations of mid-to lower Seomjin River without estuary bank have stable life with natural environment.

• Journal of Wetlands Research
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• v.21 no.3
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• pp.199-206
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• 2019

To understand vegetational characteristics of abandoned paddy terraces (APTs), species composition and plant species richness of APTs were compared with those of other natural- and constructed wetlands (NWs and CWs, respectively). Based on frequency of major vegetational components, Phragmites japonicus was more common in APTs (23.9%) than NWs (10.8%) and CWs (10.8%), whereas P. australis was less frequent in APTs (18.3%) than NWs (43.1%) and CWs (35.4%). Typha orientalis was common only in APTs (19.7%), whereas T. angustifolia was relatively common in NWs (21.5%) and CWs (32.3%). In addition, some wetland obligate species such as Leersia japonica, Oenanthe javanica, and Sium suave were frequently found only in APTs. In particular, APTs showed higher plant species richness ($6.3{\pm}2.2\;species/m^2$) than NWs ($4.9{\pm}1.8\;species/m^2$) and CWs ($3.9{\pm}1.3\;species/m^2$). APTs exhibited not only their distinctive vegetational characteristics but also higher ecological value in terms of plant species richness. Further attention on APTs as valuable biotopes supporting diverse plant species and continuous effort for management and conservation are needed more.

• Journal of Korean Society of Forest Science
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• v.96 no.5
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• pp.551-560
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• 2007

We investigated physiological damages and biochemical alleviation of five species of genus Acer under ozone fumigation in order to assess their tolerant ability against ozone toxicity. At the end of 150 ppb $O_3$ fumigation, photosynthetic characteristics were measured, and chlorophyll contents, malondialdehyde (MDA) and antioxidative enzyme activities were analyzed in the leaves of five maple trees (Acer buergerianum, A. ginnala, A. mono, A. palmatum, and A. palmatum var. sanguineum). The reduction of chlorophyll (chl) a in ozone-exposed plants was 16.8% (A. buergerianum) to 26.7% (A. ginnala) of control plants. For the content of chi b, A. ginnala and A. palmatum var. sanguineum represented the high reduction of 26.3% and 23.6%, respectively. The highest reduction on the chi a:b ratio was observed in the leaves of A. palmatum. The reduction of net photosynthesis in five species varied from 2.4% to 37.6%. Among five species, A. ginnala showed remarkable reduction (37.6%) for net photosynthesis in comparison with control. Carboxylation efficiency differed significantly (P < 0.05) among species and between control and ozone treatment. The reduction of carboxylation efficiency was the highest in the leaves of A. ginnala (44.7%). A. palmatum var. sanguineum showed the highest increase (41.7%) for MDA content. The highest increase of superoxide dismutase (SOD) activity represented in A. palmatum (26.1%) and the increase of ascorbate peroxidase (APX) activity ranged from 16.5% (A. ginnala) to 49.1% (A. palmatum var. sanguineum). A. mono showed the highest increase (376.6%) of glutathione reductase (GR) activity under ozone fumigation and A. buergerianum also represented high increase (42.3%) of GR activity. Catalse (CAT) activity increased in the leaves of A. ginnala, A. palmatun and A. palmatum var. sanguineum under ozone exposure, whereas A. buergerianum and A. mono decreased in comparison with control plants. In conclusion, physiological markers such as chlorophyll content and photosynthesis that responded sensitively to $O_3$ in maple trees were considered as the very important indicators in order to evaluate the tolerance against $O_3$ stress, and parameters were closely related with each other. Among anti oxidative enzymes, SOD and APX might be contributed to alleviate to $O_3$ toxicity through the increase of activity in all maple trees. Therefore, these compounds can be used as a biochemical maker to assess the stress tolerance to $O_3$.