• Fisheries and Aquatic Sciences
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• v.26 no.9
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• pp.558-568
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• 2023

Vibrio vulnificus is an aquatic bacterium causing septicemia and wound infection in humans. To understand this pathogen at the genomic level, it was performed whole genome sequencing of a cefoxitin-resistant strain, V. vulnificus 1908-10 possessing virulence-related genes (vvhA, viuB, and vcgC) isolated from Gadeok island coastal seawater in South Korea. The genome of V. vulnificus 1908-10 consisted of two circular contigs and no plasmid. The total genome size was estimated to be 5,018,425 bp with a guanine-cytosine (GC) content of 46.9%. We found 119 tRNA and 34 rRNA genes respectively in the genome, along with 4,352 predicted protein sequences. Virulence factor (VF) analysis further revealed that V. vulnificus 1908-10 possess various virulence genes in classes of adherence, antiphagocytosis, chemotaxis and motility, iron uptake, quorum sensing, secretion system, and toxin. In the comparison of the presence/absence of virulence genes, V. vulnificus 1908-10 had fur, hlyU, luxS, ompU, pilA, pilF, rtxA, rtxC, and vvhA. Of the 30 V. vulnificus comparative strains, 80% of the C-genotype strains have all of these genes, whereas 40% of the E-genotype strains have all of them. In particular, pilA were identified in 80% of the C-type strains and 40% of the E-type strains, showing more difference than other genes. Therefore, V. vulnificus 1908-10 had similar VF characteristics to those of type C strains. Multifunctional-autoprocessing repeats-in-toxin (MARTX) toxin of V. vulnificus 1908-10 contained 8 A-type repeats (GXXGXXXXXG), 25 B.1-type repeats (TXVGXGXX), 18 B2-type repeats (GGXGXDXXX), and 7 C-type repeats (GGXGXDXXX). The National Center for Biotechnology Information (NCBI) Basic Local Alignment Search Tool (BLAST) showed that the RtxA protein of V. vulnificus 1908-10 had the effector domain in the order of cross-liking domain (ACD)-C58_PaToxP-like domain- α/β hydrolase-C58_PaToxP-like domain.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.17 no.2
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• pp.92-100
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• 1984

The seasonal variation of catch and the fishing ground formation of anchovy caught by gill net are studied by using the data for 14 years, 1969 to 1982, published by the Fisheries Research and Development Agency of Korea. The main fishing season of anchovy by gill net can be devised into two seasons: spring and autumn. The former begins early in spring, marks peak in May with the monthly mean catch of 3,000 $\frac{M}{T}$ and ends in summer. The latter begins early in autumn, marks peak in October with the monthly mean catch of 1,500$\frac{M}{T}$ and ends in winter. The fishing ground begins to be formed in the southern waters of Korea with the begining of spring fishing season, and it is extended all over the south-eastern waters from spring to summer and it is converged to the coastal areas from autumn to winter. From the calculation of correlationship between adjacent fishing sections, the fishing ground can be devided into three areas; the northern area of $37^{\circ}N$, the southern area of $35^{\circ}N$ and the area between $35^{\circ}N\;and\;37^{\circ}N$. In the northern area of $37^{\circ}N$, monthly centers of the fishing ground are located in the adjacent aea area of Sockcho-Jumunjin district in the whole year, and its annual mean variance shows about 8 miles in the latitudinal direction and 10 miles in the longitudinal direction. In the area between $35^{\circ}N\;and\;37^{\circ}N$, monthly centers are located in the adjacent sea area of Kijang-Kuryongpo district, and the variance shows about 10 miles in the longitudinal direction and 20 miles in the latitudinal direction. In the southern area of $35^{\circ}N$, monthly centers are located in the open sea in spring and summer, and are conversed to the coastal area in autumn and winter, and the variance shows 8 miles in the latitudinal direction and 35 miles in the longitudinal direction. Water temperature and salinity at the fishing ground where the anchovy gill net was effectively operated are estimated from 14 to $20^{\circ}C$ and from 33.0 to $34.0\%0$ respectively.

• Korean Journal of Environmental Biology
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• v.32 no.4
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• pp.297-305
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• 2014

In order to understand the contribution of seaweed aquaculture to nutrients and carbon cycles in coastal environments, we measured the nutrients & carbon uptake rates of Porphyra yezoensis Ueda sampled at Nakdong-River Estuary using a chamber incubation method from November 2011 to April 2012. It was observed that the production rate of dissolved oxygen by P. yezoensis (n=30~40) was about $68.8{\pm}46.0{\mu}mol\;{g_{FW}}^{-1}h^{-1}$ and uptake rate of nitrate, phosphate and dissolved inorganic carbon (DIC) was found to be $2.5{\pm}1.8{\mu}mol\;{g_{FW}}^{-1}h^{-1}$, $0.18{\pm}0.11{\mu}mol\;{g_{FW}}^{-1}h^{-1}$ and $87.1{\pm}57.3{\mu}mol\;{g_{FW}}^{-1}h^{-1}$, respectively. There was a positive linear correlation existed between the production rate of dissolved oxygen and the consumption rates of nitrate, phosphate and DIC, respectively, suggesting that these factors may serve as good indicators of P. yezoensis photosynthesis. Further, there was a negative logarithmic relationship between fresh weight of thallus and uptake rates of nutrients and $CO_2$, which suggested that younger specimens (0.1~0.3 g) were much more efficient at nutrients and $CO_2$ uptake than old specimens. It means that the early culturing stage than harvesting season might have more possibilities to be developed chlorosis by high rates of nitrogen uptake. However, N & C demanding rates of Busan and Jeollabuk-do, calculated by monthly mass production and culturing area, were much higher than those of Jeollanam-do, the highest harvesting area in Korea. Chlorosis events at Jeollabuk-do recently might have developed by the reason that heavily culture in narrow area and insufficient nutrients in maximum yield season (Dec.~Jan.) due mostly to shortage of land discharge and weak water circulation. The annual DIC uptake by P. yezoensis in Nakdong-River Estuary was estimated about $5.6{\times}10^3\;CO_2$ ton, which was about 0.03% of annual carbon dioxide emission of Busan City. Taken together, we suggest more research would be helpful to gain deep insight to evaluate the roles of seaweed aquaculture to the coastal nutrients cycles and global carbon cycle.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.59 no.2
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• pp.139-143
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• 2014

This study was conducted to investigate the germination and growth response by Salinities of Spergularia marina Griseb grown in the western coastal region in South Korea. The germination was investigated for 10 days at temperature $10^{\circ}C$, $15^{\circ}C$, $20^{\circ}C$, $25^{\circ}C$ in order to examine the germination of Spergularia marina Griseb by NaCl concentration 0.0, 0.3, 0.5, 1.0, 2.0%. The germination of NaCl concentration 0.0~1.0% was 90% over at $15^{\circ}C$ treatment, but the germination of NaCl concentration 2.0% was 0% at all temperature treatments. To identify the growth response of Spergularia marina Griseb according to the salinity, Spergularia marina Griseb was cultivated for 8 weeks in Hoagland culture medium and sea water. In nutrient solution culture, growth was best in NaCl 50mM among 0~400 mM concentrations and in 0, 12.5, 25, 50, 100% of sea water, growth was best in 12.5% (dilution ratio with fresh water) treatment. Spergularia marina Griseb's inorganic component contents according to salinity showed that $Na^+$ content increased, but contents of $K^+$, $Ca^+$, $Mg^+$ decreased. As a result, appropriate condition for Spergularia marina Griseb's germination is considered to be maintained at $15^{\circ}C$ and in less than NaCl 1.0% of salinity. When nutrient solution culture, NaCl 0.3% of treatment level is considered to be the optimum salinity.

• Journal of the Korean Society of Marine Environment & Safety
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• v.16 no.2
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• pp.141-151
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• 2010

Harmful algal blooms (HABs), commonly known as red tides, are aquatic phenomena caused by the rapid growth and accumulation of certain microalgae, which can lead to marked discoloration of surface waters, and severe impacts on public health, commerce, and the environment. In South Korea, the red tides have been a serious and recurrent problem, especially along the south coast. Plenty of yellow loess was used to control an outbreak of the red tides for 15 years from 1996 until now. Yellow loess was almost sprayed in the vicinity of a large fish farming industry. In this research, the distribution characteristics and density distribution of zooplankton were investigated in autumn (Oct. 2008) and spring (Apr. 2009) using volume backscattering strength (SV) calculated by the zooplankton collected with north pacific standard (NORPAC) net and the echo intensity measured with ADCP at stations on the study area in the spraying ocean of yellow loess (SOYL), and the non-spraying ocean of yellow ocean (NOYL) by the red tide generating every year. The species number and the individuals per unit volume of the zooplankton collected in NOYL was high and it which was collected in SOYL was low. As a result of comparing the volume backscattering strength ($SV_c$) calculated by species and length of the zooplankton collected with NORPAC net with the volume backscattering strength ($SV_m$) calculated by the echo intensity measured with ADCP at stations on the study area, although $SV_c$ and $SV_m$ of NOYL were generally in agreement, $SV_m$ of SOYL was higher than $SV_c$ 4.3dB, i.e. ADCP is greatly influenced by suspended solid in SOYL. The horizontal distribution map of $SV_m$ at the study area in autumn (Oct. 2008) and spring (Apr. 2009) was drawn. $SV_m$ of SOYL is higher than NOYL and autumn is higher than spring. $SV_m$ can suppress the overestimate or underestimate of $SV_c$.

• Korean Journal of Remote Sensing
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• v.39 no.6_2
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• pp.1565-1576
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• 2023

An atmospheric correction algorithm based on the radiative transfer model is required to obtain remote-sensing reflectance (R_rs) from the Geostationary Ocean Color Imager-II (GOCI-II) observed at the top-of-atmosphere. This R_rs derived from the atmospheric correction is utilized to estimate various marine environmental parameters such as chlorophyll-a concentration, total suspended materials concentration, and absorption of dissolved organic matter. Therefore, an atmospheric correction is a fundamental algorithm as it significantly impacts the reliability of all other color products. However, in clear waters, for example, atmospheric path radiance exceeds more than ten times higher than the water-leaving radiance in the blue wavelengths. This implies atmospheric correction is a highly error-sensitive process with a 1% error in estimating atmospheric radiance in the atmospheric correction process can cause more than 10% errors. Therefore, the quality assessment of R_rs after the atmospheric correction is essential for ensuring reliable ocean environment analysis using ocean color satellite data. In this study, a Quality Assurance (QA) algorithm based on in-situ R_rs data, which has been archived into a database using Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Bio-optical Archive and Storage System (SeaBASS), was applied and modified to consider the different spectral characteristics of GOCI-II. This method is officially employed in the National Oceanic and Atmospheric Administration (NOAA)'s ocean color satellite data processing system. It provides quality analysis scores for R_rs ranging from 0 to 1 and classifies the water types into 23 categories. When the QA algorithm is applied to the initial phase of GOCI-II data with less calibration, it shows the highest frequency at a relatively low score of 0.625. However, when the algorithm is applied to the improved GOCI-II atmospheric correction results with updated calibrations, it shows the highest frequency at a higher score of 0.875 compared to the previous results. The water types analysis using the QA algorithm indicated that parts of the East Sea, South Sea, and the Northwest Pacific Ocean are primarily characterized as relatively clear case-I waters, while the coastal areas of the Yellow Sea and the East China Sea are mainly classified as highly turbid case-II waters. We expect that the QA algorithm will support GOCI-II users in terms of not only statistically identifying R_rs resulted with significant errors but also more reliable calibration with quality assured data. The algorithm will be included in the level-2 flag data provided with GOCI-II atmospheric correction.

• Journal of the Korean Society for Marine Environment & Energy
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• v.9 no.2
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• pp.109-119
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• 2006

This study investigated the effect of artificially enhanced mesozooplankton on the phytoplankton dynamics during fall blooming period using a mesocosm in Jangmok bay located in the Southern Sea of Korea in 2001. The four bags with 2,500 liter seawater containment were directly filled with the ambient water. And then, abundances of mesozooplankton in two experimental bags were treated 6 times higher than those in control bags by towing with net($300{\mu}m$) through the ambient water. Phytoplankton community between control and experimental bags were not significantly different in terms of chlorophyll-a(chl-a) concentration and standing crop (one-way ANOVA, p>0.05) during the study period. Initial high standing crop and chl-a concentration of phytoplankton drastically decreased and remained low until the end of the experiment in all bags. Diatoms, accounting for most of the phytoplankton community, consisted of Skeletonema costatum, Pseudo-nitzschia seriata, Chaetoceros curvisetus, Ch. debilis, Cerataulina pelagica, Thalassiosira pacifica, Cylindrotheca closterium, and Leptocylindrus danicus. Noctiluca scintillans dominated the temporal variation of mesozooplankton abundances, which peaked on Day 10 in the control and experimental bags, while the next dominant copepods showed their peak on Day 7. Shortly after mesozooplankton addition, copepod abundance in the experimental bags was obviously higher than that in the control bags on Day 1, however, it became similar to that in the control bags during the remnant period. It was supported by the higher abundance and length of both ctenophores and hydromedusae in experimental bags relative to the control bags. However, the cascading trophic effect, commonly leading to re-increase of phytoplankton abundance, was not found in the experimental bags, indicating that copepods were not able to control the phytoplankton in the bags based on the low grazing rate of Acartia erythraea. Besides that, rapidly sunken diatoms in the absence of natural turbulence as well as N-limited condition likely contributed the no occurrence of re-increased phytoplankton in the experimental bags.

• Economic and Environmental Geology
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• v.49 no.6
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• pp.417-432
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• 2016

It was firstly revealed in this research that the marine terrace of the Ijin-ri (Bukpyung-myeon, Haenam-gun) was formed during the last interglacial (Marine Isotope Stage 5e; MIS 5e). The marine terrace totally ranging from 4.8 m (asl) to 8.8 m (asl) is subdivided into 4 units; Unit I ranges 4.8-5.3 m, unit II ranges 5.3-6.9 m, unit III ranges 6.9-8.3 m, and unit IV ranges 8.3-8.8 m. Strong evidences that units II and III were formed during MIS5e were obtained based on OSL dating, the physical characterizations such as particle size distribution, magnetic susceptibility and water content, principal element and trace element analyses, and quantitative clay mineral analysis for samples at the 30 cm intervals. The rounded gravels on the marine terrace are regarded to be originated from the clastic materials transported directly from the surrounding mountains toward the marine and abraded in the coastal area, without any fluvial processes. During the warmest period (125k, unit II), the increase in rainfall, along with the rapid rise in sea level, was likely caused the high amount of clastic materials transported to the upper part of the beach. As a result of comparing clay mineral ratios of study site with those derived from sediments of either tidal flats, or the Yellow Sea, it is interpreted that the sediments of study site were influenced from the marine. The results will be used to investigate the hydrological activity and sedimentary environment during the high sea level in the past.

• Korean Journal of Ichthyology
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• v.1 no.1_2
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• pp.9-18
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• 1989

Blenniid fish, Istiblennius stellifer(jordan et Snyder) is distributed in the coastal waters of south-eastern Korea and Japan. Matured adults of blenniid fish were collected from the rocky shore of Namchun-dong, Nam-gu, Pusan, Korea on May 15, 1988. The fertilized eggs were incubated and the larvae were reared in laboratory. The eggs of this species were demersal and adhesive, and their diameters varied from 0.84 to 0.88 mm(mean 0.86 mm, n=30). They have a number of small oil globules. The water temperature throughout incubation ranged from 18.5 to $23.3^{\circ}C$ and salinity was maintained at $28.2-29.5\;^{\circ}/_{\circ\circ}$. The hatching took place in 130 hours after fertilization. The newly hatched larvae were 2.70 mm in total length with 11 (abdominal)+22~25 (caudal)=33-36 myomeres. The larvae absorbed the yolk material and oil globule completely in 10 days after hatching and became postlarvae. Total lengths of the larvae reached 4.65 and 5.75 mm in 10 and 13 days after the hatching, respectively.