• Molecules and Cells
• /
• 제37권1호
• /
• pp.36-42
• /
• 2014

The tomato (Solanum lycopersicum L.) is a model plant for genome research in Solanaceae, as well as for studying crop breeding. Genome-wide single nucleotide polymorphisms (SNPs) are a valuable resource in genetic research and breeding. However, to do discovery of genome-wide SNPs, most methods require expensive high-depth sequencing. Here, we describe a method for SNP calling using a modified version of SAMtools that improved its sensitivity. We analyzed 90 Gb of raw sequence data from next-generation sequencing of two resequencing and seven transcriptome data sets from several tomato accessions. Our study identified 4,812,432 non-redundant SNPs. Moreover, the workflow of SNP calling was improved by aligning the reference genome with its own raw data. Using this approach, 131,785 SNPs were discovered from transcriptome data of seven accessions. In addition, 4,680,647 SNPs were identified from the genome of S. pimpinellifolium, which are 60 times more than 71,637 of the PI212816 transcriptome. SNP distribution was compared between the whole genome and transcriptome of S. pimpinellifolium. Moreover, we surveyed the location of SNPs within genic and intergenic regions. Our results indicated that the sufficient genome-wide SNP markers and very sensitive SNP calling method allow for application of marker assisted breeding and genome-wide association studies.

• 원예과학기술지
• /
• 제31권1호
• /
• pp.103-109
• /
• 2013

Estimating the high tuber solids needs a simulation system on potato growth, and its development should be obtained by using agricultural elements which analyze the relationship between crop growth and agricultural factors. An accurate simulation to predict solids level against climatic change employs a calculation of in vivo energy consumption and bias for growth and induction shape in a slight environmental adaptation. So, to calculate in vivo energy consumption, this study took a concept of estimate of the amount of basal metabolism in each tuber. In the validation experiments, the results of measuring solid accumulation of potatoes harvested at dates suggested by simulation agreed with the actual measured values in each regional field during the growth period of years from 2006 till 2010. The mean values of tuber solids level and inter-annual level variation in validation experiments were predicted well by the simulation model. And also, the results of validation experiments represent that concentration of tuber solids were due mainly to the duration of sunshine, above 190 hours per a month, and the cumulative amount of radiation, above 2,200 $MJ{\cdot}m^{-2}$, of the effective growth period.

• 한국육종학회지
• /
• 제42권3호
• /
• pp.207-211
• /
• 2010

'Taedong Valley' is a high yielding and processing potato cultivar, which is a clonal selection resulting from a cross between 'W870' and 'A88431-1'. It is a medium maturating cultivar with medium plant height and light green foliage. 'Taedong Valley' has profuse flowering habit and light purple flowers. Tubers are smooth, round, and with yellow skin, light yellow flesh, medium eye depth. Tubers have medium dormancy and good keeping quality. 'Taedong Valley' has stable yield under wide range of climatic conditions. It is resistant to common scab and potato virus Y, but moderately susceptible to late blight. It is also resistant to most of the disorders, particularly dehiscence, hollow heart and internal brown spots. This cultivar has high level of tuber uniformity and capable of yielding 43.6 t/ha which is about 9.0% higher than the control potato cultivar 'Atlantic' under optimum agronomical practices.

• 한국작물학회:학술대회논문집
• /
• 한국작물학회 2018년도 추계학술대회
• /
• pp.179-179
• /
• 2018

Potato (Solanum tubersosum L.) is susceptible to various environmental stresses such as salt, high temperature, and drought. Especially, potato tuber growth is greatly affected by drought that causes not only yield reduction but also loss of tuber quality. Since unpredictable global weather changes cause more severe and frequent water limiting conditions, improvement of potato drought tolerance can minimize such adverse effects under drought and can impact on sustainable potato production. Genetic engineering can be utilized to improve potato drought tolerance, but such approaches using endogenous potato genes have rarely been applied. We were obtained AtbZIP28 gene transgenic potato plants. It is identified transcript levels at various stress conditions, polyethylene glycol (PEG), NaCl, (ABA). Also, For identification to regulate ER stress response genes in AtbZIP28 gene transgenic potato plant, we screened seven potato genes from RNA-seq analysis under TM treatment. Five and two genes were up- and down-regulated by TM, respectively. Their expression patterns were re-examined at stress agents known to elicit TM, DTT, DMSO and salt stress.

• 한국작물학회:학술대회논문집
• /
• 한국작물학회 2018년도 추계학술대회
• /
• pp.42-42
• /
• 2018

Anthocyanins has a strong antioxidant capacity but exhibit poor stability in water. Therefore, stability of anthocyanin from purple potato (Solanum tuberosum L.) was encapsulated by the application of food polymers. Solid formulation of purple potato was prepared using whey protein, tapioca and lecithin by capillary rheometer at $80^{\circ}C$. The ratio of the polymer and potato powder was 2:8. Total phenolic compound, total flavonoid, total anthocyanin and antioxidant activity was investigated by the spectrophotometer. Result revealed that total phenolic compound (TP) ($5321{\mu}g/100g$), total flavonoid (TF) ($1352{\mu}g/100g$) total anthocyanin (TA) ($764{\mu}g/100g$) and free radical antioxidant activity (DPPH) (86%) was higher in 0.01 M acetic acid mediated lecithin based formulation compared to control (Potato powder) (TP: $1357{\mu}g/100g$; TF) ($634{\mu}g/100g$, TA) ($264{\mu}g/100g\;DPPH$) (64%). Lecithin is a strong emulsifier having capacity to extract bioactive compound and encapsulate extracted compound by nonpolar tail and negatively charged head. Therefore, it would be concluded that lecithin might be used as an encapsulating agent for the bioactive compound from purple potato.

• 한국작물학회:학술대회논문집
• /
• 한국작물학회 2018년도 추계학술대회
• /
• pp.274-274
• /
• 2018

Anthocyanins has a strong antioxidant capacity but exhibit poor stability in water. Therefore, stability of anthocyanin from purple potato (Solanum tuberosum L.) was encapsulated by the application of food polymers. Solid formulation of purple potato was prepared using whey protein, tapioca and lecithin by capillary rheometer at $80^{\circ}C$. The ratio of the polymer and potato powder was 2:8. Total phenolic compound, total flavonoid, total anthocyanin and antioxidant activity was investigated by the spectrophotometer. Result revealed that total phenolic compound (TP) ($5321{\mu}g/100g$), total flavonoid (TF) ($1352{\mu}g/100g$) total anthocyanin (TA) ($764{\mu}g/100g$) and free radical antioxidant activity (DPPH) (86%) was higher in 0.01 M acetic acid mediated lecithin based formulation compared to control (Potato powder) (TP: $1357{\mu}g/100g$; TF) ($634{\mu}g/100g$, TA) ($264{\mu}g/100g\;DPPH$) (64%). Lecithin is a strong emulsifier having capacity to extract bioactive compound and encapsulate extracted compound by nonpolar tail and negatively charged head. Therefore, it would be concluded that lecithin might be used as an encapsulating agent for the bioactive compound from purple potato.

• Horticulture, Environment, and Biotechnology : HEB
• /
• 제59권6호
• /
• pp.787-804
• /
• 2018

Flavor quality is import for determining consumer perception and acceptance of tomato products. In this study, 'Fendou' tomato fruit were harvested at six ripening stages and sampled to investigate the development of flavor-relevant compounds during vine ripening. Results showed that upon the initiation of ripening there was an increase in respiration rate and concomitant ethylene evolution that was associated with increased membrane permeability. In accordance with these physiological changes, flavor-relevant compounds demonstrated different expression patterns as fruit ripened, which contributed to 'red-ripe' flavor characteristics of red-ripe fruit. Based on correlation analysis between ethylene evolution and the flavor-relevant compounds during 'Fendou' tomato ripening and the other researchers' reports, the activation of System 2-dependent autocatalytic ethylene production plays an important role in the development of most flavor-relevant compounds during tomato vine ripening. Overall, our results suggested that most flavor-relevant compounds that accumulated the most during tomato fruit ripening at red stage could be under ethylene regulation and were among the most important contributors to the 'red-ripe' flavor. Due to the development of these compounds, the flavor quality at late ripening stages is different from that of fruit at early ripening stages.

• 한국환경복원기술학회지
• /
• 제24권1호
• /
• pp.81-96
• /
• 2021

The purpose of this study was conducted in order to provide the necessary basic data, to establish management solutions and to improve biodiversity by calculating similarity index, urbanization index (UI), and disturbed index (DI) to understand current status of naturalized and invasive alien plants in Eulsukdo, Maekdo and Samnak ecological parks in Busan, South Korea. The numbers of naturalized plants identified in these parks were 76 taxa; 20 families, 53 genera, and 76 species. As a result of the similarity index analysis, the most similarity level (83.0%) was obtained at Eulsukdo and Maekdo parks. The numbers of invasive plants identified in the two parks were 11 taxa; Rumex acetosella L., Sicyos angulatus L., Solanum carolinense L., Ambrosia artemisiifolia L., Ambrosia trifida L., Hypochaeris radicata L., Lactuca serriola L., Solidago altissima L., Symphyotrichum pilosum (Willd.) G.L.Nesom, Paspalum distichum L., and Humulus scandens (Lour.) Merr. Overall, UI and DI were 28.6% and 66.7%, respectively, indicating that the ecosystem disruption was serious.

• 생태와환경
• /
• 제54권2호
• /
• pp.142-150
• /
• 2021

To analyze the distribution characteristics of alien plants in various habitat types, 249 sites were selected from four administrative districts in the Gyeongsang region of Korea. The survey was conducted across nine different habitat types. A total of 115 species of alien plants were collected; comprising 23 families, 73 genera, 112 species, and 3 varieties. Species from the family Compositae were the most common at 33.0%. Raunkiaer's life forms had the highest occurrence rate with 70 species(60.9%) of therophytes(Th) followed by 30 species (26.1%) of hemicryptophytes (H) and 8 species (7.0%) of geophytes (G). The distributions of alien plant species per habitat type were: 81 species on the roadside; 80 species on vacant lots and artificial habitats; 67 species in streams; 53 species in grasslands; 47 species in cultivated lands; and 39 species on the coast. Since 2017, the number of alien plants has increased in Gyeongju-si, Cheongdo-gun, and Pohang-si, and decreased in Ulsan Metropolitan-si. In each region, 614 taxa were observed. The invasive alien species, Sicyos angulatus, Hypocaeris radicata, and Solanum carolinense, were observed for the first time and are expected to further increase the disturbance of the ecosystem.

• 한국환경과학회지
• /
• 제30권2호
• /
• pp.119-133
• /
• 2021

The purpose of this study was to provide basic information for rational management plans for sustainable conservation and utilization by comprehensive analyzing the flora distributed in Yongchu valley, Changwon-si. The flora of Yongchu valley were summarized as 319 taxa including 93 families, 212 genera, 285 species, 3 subspecies, 6 forms and 25 varieties. The endemic plants were 5 taxa such as Chrysosplenium pilosum var. fulvum, Impatiens koreana, Lespedeza maritima, Thalictrum acteifolium and Weigela subsessilis. The rare plants were 11 taxa including I. koreana, Prunus yedoensis and Magnolia kobus. The specific plants by floristic region were 38 taxa including I. koreana, Jeffersonia dubia., M. kobus and P. yedoensis which are class V. The naturalized plants were 11 taxa including Solanum americanum, Aster pilosus, Crassocephalum crepidioides and Cerastium glomeratum and so forth and invasive alien plants among these plants was 1 taxa of A. pilosus. The target plants adaptable to climate change were 8 taxa including Corydalis turtschaninovii of northern plant, I. koreana of endemic plant, and Meliosma myriantha of southern plant.