• Title/Summary/Keyword: Soil microorganism

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A report on 20 unrecorded bacterial species of Korea isolated from soil in 2021

  • Ji Yeon, Han;Oung Bin, Lim;So-Yi, Chea;Hyosun, Lee;Ki-Eun, Lee;In-Tae, Cha;Won-Jae, Chi;Dong-Uk, Kim
    • Journal of Species Research
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    • v.11 no.4
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    • pp.310-320
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    • 2022
  • As a subset study to discover indigenous prokaryotic species in Korea, we isolated 20 bacterial strains and assigned them to the phyla Actinobacteria, Bacteroidota, Firmicutes, and Proteobacteria. From the high 16S rRNA gene sequence similarity (≥98.7%) and formation of a robust phylogenetic clades, we determined that each strain belonged to independent, predefined bacterial species. There are no official reports of these 20 species in Korea; therefore, 7 strains of the Actinobacteria, 2 strain of the Bacteroidota, 3 strains of the Firmicutes, and 8 strains of the Firmicutes are described in Korea for the first time. Gram reaction, colony and cell morphology, basic biochemical characteristics, and isolation sources are also described in the species description section.

Soil Microorganism Degrading Polycaprolactone (Polycaprolactone을 분해하는 토양미생물)

  • Kim Mal-Nam
    • Korean Journal of Environmental Biology
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    • v.22 no.3
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    • pp.400-404
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    • 2004
  • Polycaprolactone (PCL), a synthetic aliphatic polyester, was buried in activated sludge soil for 66 days at $27^\circ{C}$ and $37^\circ{C}$. The morphology of the surface of PCL film degraded by soil microorganisms was observed. Soil microorganisms degrading PCL were isolated and identified. Soil fungi and soil bacteria utilizing PCL as carbon or energy source were identified as Paecilomyces fumosoroseus KH27, Penicillium digitatum KH28, Fusarium solani KH29, Aspergillus sp. KH30 and Ochrobactrum anthropi KH31, respectively. Biodegradation test of PCL by the isolated strains showed that, P. digitatum KH28 exhibited the most PCL degrading activity at $27^\circ{C}$. However, at $37^\circ{C}$ O. anthropi KH31 showed higher degrading activity than the other soil microorganisms tested.

A Comparative Study on Enhanced Phytoremediation of Pb Contaminated Soil with Phosphate Solubilizing Microorganism(PSM) and EDTA in Column Reactor (칼럼 반응조에서 Phosphate Solubilizing Microorganism(PSM)과 EDTA에 의한 납 오염토양의 식물상 복원 증진에 관한 비교연구)

  • Nam, Yoon-Sun;Park, Young-Ji;Lee, In-Sook;Bae, Bum-Han
    • Journal of Korean Society of Environmental Engineers
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    • v.30 no.5
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    • pp.500-506
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    • 2008
  • Enhanced phytoremediation with EDTA or PSM(Phosphate solubilizing microorganism) was studied using green foxtail (Setaria viridis) in columns packed with 1,200 mgPb/kg contaminated soil to investigate the effects of EDTA or PSM on the plant uptake and vertical migration of Pb. EDTA, equimolar amount of total Pb in the column soil, was administered in two methods: the one was treated with 1/6 aliquots of the equimolar EDTA every week for 6 weeks and the other was treated with single dose of the equimolar EDTA before 14 days of harvest. The results showed that higher concentrations of Pb accumulated in the biomass of green fowtail after the chemical or biological treatment. The plant-root Pb concentration in PSM treatment(M), EDTA aliquot treatment(ES), and single dose treatment(E) was 2.6, 3.0, and 3.3 times higher, respectively, than that in the plant-root of control(164.7 mg/kg). The plant-stem Pb concentration in the M, ES and E treatment was 27, 37, and 40 times higher than that in the stem of control(8.1 mg/kg). The translocation factor, the ratio of shoot/root Pb concentration, was 0.6 in the two EDTA treatment, 0.5 in the M treatment, and 0.05 in the control, respectively. The largest amount of Pb was phyto-extracted in the E treatment whereas vertical migration of EDTA was significant in the ES treatment. This result showed that a single large dose of EDTA before harvest serves better for enhanced phytoremediation of Pb. Although, treatment with PSM showed less Pb phytoextraction by the plant but enhanced both the growth of plants in the column and microbial dehydrogenase activity in the soils. Therefore, enhanced phytoextraction of Pb with PSM treatment can be an alternative option for EDTA treatment, which is toxic to plants and soil ecosystem.

Effects of Composted Liquid Manure and Microbial Agent Types on Growth and Thatch Decomposing of Creeping Bentgrass (가축분뇨발효액비와 미생물제제 종류별 시용에 따른 크리핑 벤트그래스의 생육과 토양중 대취분해에 미치는 영향)

  • Lim, Ji Yeon;Ham, Suon Kyu;Lee, Yeong Min;Cha, Young Gi
    • Journal of the Korea Organic Resources Recycling Association
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    • v.22 no.4
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    • pp.54-61
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    • 2014
  • This study was conducted to investigate the effect of Actinomyces sp. and Bacillus sp., United States granular microorganisms and Japan granular microorganisms on turfgrass growth and thatch decomposing of creeping bentgrass in golf course by measuring turf color index, chlorophyll index, thatch content of soil, root length, turf density and chemical properties and thatch content of soil. Fertilizer treatment was designed as follows; control(CF; compound fertilizer), microorganism medium(M; CF+M), microorganism medium and livestock manure fertilizer(M-L; CF+M+LMF), microorganism medium, livestock manure fertilizer and amino acid liquid fertilizer(M-L-A; MM+LMF+ALF), United States granular microorganisms(USGM; CF+USGM), Japan granular microorganisms(CF+JGM). Soil properties investigated after experiment was scarcely affected by applied fertilizers in root zone of creeping bentgrass. The turf color index and chlorophyll index of M, M-L, M-L-A, USGM, JGM treatment were higher than those of CF. The turfgrass root in M-L treatment was longer than others. The thatch content of soil in M treatment was longer than others. The thatch content of M was decreased than that of CF by 6.8%. These was suggested that application of M induced the development of quality and growth of creeping bentgrass by assisting turfgrass growth and thatch decomposing.

Investigation on Vanishing Possibility of Food waste Using Fermentation soil (발효토에 의한 음식물쓰레기 소멸화 가능성의 검토)

  • Phae, Chae-gun;Joo, Hung-soo;Park, Jung-soo;Choi, Heon-su;Jang, Ki-hun
    • Journal of the Korea Organic Resources Recycling Association
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    • v.8 no.4
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    • pp.138-146
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    • 2000
  • This study was performed to determine the best fermentation soil in vanishing composting of individual residence garbage. At the result, temperature, weight, water content, volatile solid were reduced gradually by reaction of microorganism in the reactors after food was inserted for 9 days. The vanishing possibility was observed in all reactors. The best reactor was F and 4 that seeded microorganisms which were provided at S University. In addition it was possible to shorten cycle of putting in food waste. Inactivated reactors will be bad because of increased water content for long reaction time. Sodium chloride was accumulated and not vanished as time passed. But reactor was not insulated, the activities of microorganism in the reactor were affected highly by cold weather(about less than $12^{\circ}C$). When the study was extended to find out the feasibility of application, the retention time could be shortened to 3days form 9 days, when the microorganism reactor that used the fermentation soil seeded microorganisms which were provided at S University was maintained about $20^{\circ}C$.

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Attached Treatment using Combined Septic Tank and Soil Filter of Treated Livestock and Farm House Wastewater (축산폐수 처리수 및 농가 생활잡배수의 합병정화조와 Soil Filter 에 의한 연계처리)

  • Kim, Eun-Ho;Park, Hyun-Geoun;Sung, Nak-Chang
    • Korean Journal of Environmental Agriculture
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    • v.17 no.4
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    • pp.329-334
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    • 1998
  • This study was conducted in order to investigate removal rate of organic matter, nitrogen and phosphorus to reduce environmental polluation with treatment to attach combined septic tank to 3 stage soil filter after mixing anaerobic treated water of livestock wastewater and low concentrated wastewater generated in farm house. Because anaerobic filter bed was packed in combined septic tank and a microorganism was accumulated in combined septic tank with increasing hydraulic retention time(HRT), if HRT $4{\sim}12day$, CODcr was removed $63.4{\sim}84.0%$. Also, $NH_4\;^+-N$ and $PO_4\;^{3-}-P$ were removed $3.9{\sim}5.4%$ and $18.3{\sim}29.0%$, respectively. In being re-treated by 3 stage soil filter, although hydraulic loading rate was gradually increased, CODcr, $NH_4\;^+-N$ and $PO_4\;^{3-}-P$ were removed above 90% due to filtration, adsorption, ion exchange, and action of soil microorganism. Generally, the attached treatment of combined septic tank and 3 stage soil filter did suitably treat livestock wastewater to water standard of discharge applied from '96 year, in view of decreasing pollution loading amount and recycling of agricultural water.

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Effect of Fertigation with Indigenous Microorganism and EM on Soil Chemical and Microbial Properties and Growth of Cherry Tomatoes (토착미생물과 EM 활용 액비 처리가 방울토마토의 토양 화학성과 미생물상 및 생장에 미치는 영향)

  • Choi, Hyun-Sug;Jung, Ji-Sik;Kuk, Yong-In;Choi, In-Young;Jung, Seok-Kyu
    • Journal of the Korea Organic Resources Recycling Association
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    • v.27 no.4
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    • pp.15-24
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    • 2019
  • The study was compared for soil chemical and microbial properties as well as growth of the cherry tomato (Lycopersicon esculentum var. cerasiforme) plants environmentally friendly gown for 3 years and 5 years, which had been fertigated with homemade liquid fertilizer (LF) with indigenous microorganism as an additional fertilizer. Treatment included LF with indigenous microorganism for 3 years (3-year IM-LF) and for 5 years (5-year IM-LF), with an effective microorganism for 10 years (EM-LF), which had been applied with 1,000 times of dilution in the farmhouse. IM-LF and EM-LF materials had increased pH pattern for 16 weeks, in particular for increase of 1.2 for EM-LF. IM-LF material contained slightly higher EC but similar level of 0.2 dS/m to EM-LF. For a pot experiment in the greenhouse, IM-LF treatment increased root dry weight of the cherry tomato plants. In the farmhouse experiment, IM-LF treatment increased to 7.5 of soil pH and 8.4 dS/m of EC, indicating high salt accumulation. EM-LF treatment increased to 62 g/kg of soil OM, which would have affected concentrations of macro essential nutrients, including T-N in the soil. However, the optimum soil chemical levels for growth of cherry tomato plants were observed on the IM-LF plots. EM-LF treatment increased number of bacteria and actinobacteria in the soil. EM-LF treatment increased concentrations of macro essential nutrients in the plants, except for P, with similar nutrient concentrations observed between 3-year IM-LF and 5-year IM-LF-treated plants. Leaf SPAD and PS II levels decreased in the plants treated with 3-year IM-LF. EM-LF treatment increased leaf width and length, number of leaves, canopy area, plant height, and stem diameter in the mid-term stage of growth, which were not significantly different between the treatments. EM-LF treated-plants had two times higher leaf dry weight than those of values observed on the IM-LF plants, which was the opposite result observed on the number of fruit.

Temporal and Spatial Change in Microbial Diversity in New-developed Wetland Soil Covered by Tamarix chinesis Community in Chinese Yellow River Delta

  • Chen Weifeng;Ann Seoung-Won;Kim Hong-Nam;Shi Yanxi;Mi Qinghua
    • Journal of Environmental Science International
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    • v.14 no.4
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    • pp.367-371
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    • 2005
  • Soil samples were collected from new-developed wetland soil ecosystem of Tamarix chinesis plantation in Chinese Yellow River Delta in different months of 2003. Soil characteristics, temporal change and spatial distribution of microbial community composition and their relationship with nitrogen turnover and circling were investigated in order to analyze and characterize the role of microbial diversity and functioning in the specific soil ecosystem. The result showed that the total population of microbial community in the studied soil was considerably low, compared with common natural ecosystem. The amount of microorganism followed as the order: bacteria> actinomycetes>fungi. Amount of actinomycetes were higher by far than that of fungi. Microbial population remarkably varied in different months. Microbial population of three species in top horizon was corrected to that in deep horizon. Obvious rhizosphere effect was observed and microbial population was significantly higher in rhizosphere than other soils due to vegetation growth, root exudation, and cumulative dead fine roots. Our results demonstrate that microbial diversity is low, while is dominated by specific community in the wetland ecosystem of Tamarix chinesi.

Effects of Antagonistic Rhizobacteria on the Biological Control of Gray Mold in Greenhouse Grown Strawberry Plants (길항성 근원 세균이 딸기 시설재배에서 발생하는 잿빛곰팡이병의 생물학적 제어에 미치는 영향)

  • Cho, Jung-Il;Cho, Ja-Yong;Yang, Seung-Yul
    • Korean Journal of Organic Agriculture
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    • v.13 no.2
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    • pp.161-173
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    • 2005
  • This study was carried out to clarify the effects of antifungal bacterial strains isolated from the greenhouse soil grown strawberry plants on the growth inhibition of plant pathogen, gray mold (Botrytis cinerea) infected in strawberry plants in Damyang and Jangheung districts. Antagonistic bacterial strains were isolated and investigated into the antagonistic activity against gray mold. Screened ten bacterial strains which strongly inhibited Botrytis cinerea were isolated from the greenhouse grown strawberry plants, and the best antifungal microorganism designated as SB 143 was finally selected. Antifungal bacterial strain SB 143 was identified to be the genus Bacillus sp. based on the morphological and biochemical characterization. Bacillus sp. SB 143 showed 59.4% of antifungal activity against Botrytis cinerea. By the bacterialization of culture broth and heated filtrates of culture broth, Bacillus sp. SB 143 showed 93.1% and 32.1% of antagonistic activity against Botrytis cinerea.

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Isolation and Cultivation of Microorganism Producing Levanbiose from Levan (Levan으로부터 Levanbiose를 생산하는 미생물의 분리 및 배양)

  • 이태호;강은정;강수경
    • Journal of the Korean Society of Food Science and Nutrition
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    • v.27 no.3
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    • pp.441-447
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    • 1998
  • A bacterial strain No. 43 was isolated from soil samples as a levan-assimiating microorganism producing an extracellular levanase and hydrolying levan to levanbiose. According to the taxonomic characteristics of its morphological and physiological properties, the strain was idenified as Pseudomonas sp. No. 43. The optimum culura medium was composed of 10g levan, 5g(NH4)2SO4, 3g NH4Cl, 3g polypepton, 1g K2HPO4, 0.5gMgSO4.7H2O, and 0.2g MnCl2.4H2O per liter. The cultivation for levanase was carried out in pH 7.0 at 4$0^{\circ}C$ for 28hr. The reaction product was a kind of oligosaccharide and it was purified by chilled ethanol precipitation and gel filtration for evalluation of degree of polymerization (DP). The purified product was determined as levanbiose of MW 342 and DP2 by HPLC and FAB-MS.

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