• Title/Summary/Keyword: Soil microbial ecology

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Population and transfer factor of basidiomycota collected in the heavy metal-contaminated and healthy soils (중금속 오염지 및 건전지역에서 수집된 담자균류의 분포)

  • Jang, Kab-Yeul;Choi, Sun-Gyu;Lee, Kang-Hyo;Seok, Soon-Ja;Cheong, Jong-Chun;Jung, Gu-Bok;Kim, Gyu-Hyun;Sung, Jae-Mo
    • Journal of Mushroom
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    • v.3 no.4
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    • pp.145-153
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    • 2005
  • Two hundred seventy-four microorganisms were isolated from the soil of abandoned mines around for selecting the heavy metal-degrading strains and their microbial diversity was analyzed. The specimens of macrofungi were isolated from the soil of abandoned mines around for selecting the heavy metal-degrading strains. Eunseong and Dogok in Gyeongsangbuk-do, for selecting the heavy metal-degrading strains. Soil was also collected from same location. Contents of heavy metals (Cd, Cu, Pb, Zn, Ni, Cr, and As) were determined spectrometically in fruiting bodies of forty eight wild macrofungi specimens with soils. When the analysed their transfer factor from soil to fruiting body, Amanita volvata have the highest transfer factor of cadmium and arsenic. And Mycena pura showed the highest in mercury, Marasmius pulcherripes in zinc, Laccaria laccata in nickel, and Collybia confluens in chrome. When compare the population of mushrooms between the contaminated mines and Mt. Chiak as the healthy area, Genus Russula and Collybia were collected both area, but Leucocoprinus, Coprinus, Suillus, Lepiost, Gyroporus, Lepista, Microstoma, Stropharia, and Agrocybe were only in the contaminated mine area.

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Enterococcus faecium LKE12 Cell-Free Extract Accelerates Host Plant Growth via Gibberellin and Indole-3-Acetic Acid Secretion

  • Lee, Ko-Eun;Radhakrishnan, Ramalingam;Kang, Sang-Mo;You, Young-Hyun;Joo, Gil-Jae;Lee, In-Jung;Ko, Jae-Hwan;Kim, Jin-Ho
    • Journal of Microbiology and Biotechnology
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    • v.25 no.9
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    • pp.1467-1475
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    • 2015
  • The use of microbial extracts containing plant hormones is a promising technique to improve crop growth. Little is known about the effect of bacterial cell-free extracts on plant growth promotion. This study, based on phytohormonal analyses, aimed at exploring the potential mechanisms by which Enterococcus faecium LKE12 enhances plant growth in oriental melon. A bacterial strain, LKE12, was isolated from soil, and further identified as E. faecium by 16S rDNA sequencing and phylogenetic analysis. The plant growth-promoting ability of an LKE12 bacterial culture was tested in a gibberellin (GA)-deficient rice dwarf mutant (waito-C) and a normal GA biosynthesis rice cultivar (Hwayongbyeo). E. faecium LKE12 significantly improved the length and biomass of rice shoots in both normal and dwarf cultivars through the secretion of an array of gibberellins (GA1, GA3, GA7, GA8, GA9, GA12, GA19, GA20, GA24, and GA53), as well as indole-3-acetic acid (IAA). To the best of our knowledge, this is the first study indicating that E. faecium can produce GAs. Increases in shoot and root lengths, plant fresh weight, and chlorophyll content promoted by E. faecium LKE12 and its cell-free extract inoculated in oriental melon plants revealed a favorable interaction of E. faecium LKE12 with plants. Higher plant growth rates and nutrient contents of magnesium, calcium, sodium, iron, manganese, silicon, zinc, and nitrogen were found in cell-free extract-treated plants than in control plants. The results of the current study suggest that E. faecium LKE12 promotes plant growth by producing GAs and IAA; interestingly, the exogenous application of its cell-free culture extract can be a potential strategy to accelerate plant growth.

Variations of DOC and Phenolics in Pore-water of Peatlands (이탄습지 공극수내 용존유기탄소와 페놀계열 물질의 변화도)

  • Freeman, Chris;Kim, Seon-Young;Kang, Ho-Jeong
    • Korean Journal of Ecology and Environment
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    • v.35 no.4 s.100
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    • pp.306-311
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    • 2002
  • The amount and composition of dissolved organic carbon in wetlands are of great importance for their influence in secondary productivity, various biogeochemical processes, and aquatic ecosystem functions. In the present study, we measured variations of DOC and phenolics concentrations in pore-water of three northern peatlands (bog, fen, and swamp) over a 1-year period. General microbial activity (soil respirometry) and phenol oxidase enzyme activity were determined in the same peatlands to elucidate mechanisms underlying the differences in DOC and phenolics contents. The concentrations of DOC varied 25.5-45.4 (bog),29.2-71.4 (fen), and 13.5-87.6 (swamp) mg/L, while phenolic concentrations ranged 13.3-48.1 (bog), 7.6-29.5(fen) , and 4.9-30.8 (swamp) mg/L. The seasonal variations of DOC and phenolics in the swamp suggest that litterfall may be one of the most important factors for the DOC dynamics in such systems. The lowest microbial activity and phenol oxidase activity were found in the bog, which appears to Induce high percentage of phenolic contents in pore-water from bogs. It is also suggested that not only the DOC concentrations but also composition of DOC is of great importance in wetland biogeochernistry.

Changes of Chemical and Microbial Properties of Soils after Forest Fires in Coniferous and Deciduous Forests (침엽수와 활엽수 산림에서 산불 후 토양화학적 및 토양미생물학적 특성 변화)

  • Kim, Jong-Gap;O, Gi-Cheol
    • The Korean Journal of Ecology
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    • v.24 no.1
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    • pp.1-7
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    • 2001
  • This study was carried out to examine the recovery of forest ecosystem by changes of soil chemical properties and soil microorganism at the burned areas of coniferous (Mt. Chocdae) and broad leaved forest (Samsinbong in Mt. Chiri). In the soil chemical properties of the burned area of Samsinbong, pH was 5.8, and contents of organic matter, total nitrogen, available P₂O/sub 5/, exchangeable K/sup +/, exchangeable Ca/sup ++/ and exchangeable Mg/sup ++/ were 7.42%, 0.73%, 28.5 ㎎/㎏, 1.3 me/100g, 13.3 me/100g and 2.2 me/100g, respectively. But they showed a tendency to decrease with time. In the soil chemical properties of the burned area of Mt. Chocdae, pH was 5.3, and contents of organic matter, total nitrogen, available P2O5, exchangeable K/sup +/, exchangeabe Ca/sup ++/ and Exchangeable Mg/sup ++/ were 6.42%, 0.25%, 24.4 ㎎/㎏, 0.7 me/100g, 3.7 me/100g and 2.1 me/100g, respectively, and they also showed a tendency to decrease with time. In contrast, they were not changed with time at the unburned areas. At the burned area of Samsinbong, soil microorganism showed to order of fungi (69×10⁴ CFU), actinomycetes (523×10⁴ CFU) and aerobic bacteria (291×10⁴ CFU), and at the unburned area, showed to order of actinomycetes (745×10⁴ CFU), fungi (594×10⁴ CFUU), and aerobic bacteria (160×10/sup 4/ CFU). At the burned area of Mt. Chocdae, soil microorganism showed to order of fungi (676×10⁴ CFU), actinomycetes (434×10⁴ CFU) and aerobic bacteria (350×10⁴ CFU), and at the unburned area, showed to order of fungi (461 ×10⁴ CFU), aerobic bacteria (328×10⁴ CFU) and actinomycetes (319×10⁴ CFU). Soil microorganisms of the aerobic bacteria, actinomycetes and fungi appeared at the burned areas were much more abundant than unburned areas. The aerobic bacteria appeared at the coniferous forest were also much more than the broad-leaved forest. The actinomycetes and fungi appeared at the broad-leaved forest were much more abundant than the coniferous forest.

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Evaluation of Aquatic Ecological Characteristics in Sinpyongcheon Constructed Wetlands for Treating Non-point Source Pollution (비점오염원 저감을 위한 신평천 인공습지의 수생태학적 특성 평가)

  • Seo, Dong-Cheol;Kang, Se-Won;Lim, Byung-Jin;Park, Jong-Hwan;Kim, Kap-Soon;Lee, Jun-Bae;Kim, Hyun-Ook;Heo, Jong-Soo;Chang, Nam-Ik;Seong, Hwan-Hoo;Cho, Ju-Sik
    • Korean Journal of Soil Science and Fertilizer
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    • v.44 no.3
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    • pp.400-407
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    • 2011
  • To evaluate the aquatic ecological characteristics in Sinpyongcheon constructed wetlands for treating nonpoint source pollution, the removal rates of nutrients in water, the total amounts of T-N and T-P uptakes by water plants, and chemical characteristics of T-N and T-P in sediment were investigated. The concentrations of BOD, COD, SS, T-N and T-P in inflow were 0.07~1.47, 0.60~2.65, 0.50~4.60, 1.38~6.26 and $0.08{\sim}0.32mg\;L^{-1}$, respectively. The removal rates of BOD, COD, SS, T-N, and T-P were 14%, 6%, 18%, 24%, and 10%, respectively. The maximum amount of T-N uptake by water plants in August was $813mg\;plant^{-1}$ for Phragmites communis TRIV in $2^{nd}$ bed, $1,172mg\;plant^{-1}$ for Typha orientalis PRESL in $3^{rd}$ bed, respectively. The maximum amount of T-P uptake by water plants in August was $247mg\;plant^{-1}$ for Phragmites communis TRIV in $2^{nd}$ bed, $359mg\;plant^{-1}$ for Typha orientalis PRESL in $3^{rd}$ bed, respectively. Organic matter, T-N, and T-P contents in sediments were high in the order of $1^{st}$ bed > $2^{nd}$ bed > $3^{rd}$ bed. Microbial biomass C/N/P ratios in sediments in $1^{st}$, $2^{nd}$, and $3^{rd}$ were 78~110/3~6/1, 73~204/1~6/1, and 106~169/1~6/1, respectively.

Estimation of carbon storage in reclaimed coal mines: Focused on Betula platyphylla, Pinus koraiensis and Pinus spp. plantations (폐탄광 산림복구지의 수종별 탄소 저장량 추정: 자작나무, 잣나무, 소나무류 식재지를 중심으로)

  • Kim, Gwangeun;Kim, Seongjun;Kim, Hyun-Jun;Chang, Hanna;Kim, Hyungsub;Park, Yong-Ha;Son, Yowhan
    • Korean Journal of Environmental Biology
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    • v.38 no.4
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    • pp.733-743
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    • 2020
  • We estimated the carbon storage of coal mines reclaimed using Betula platyphylla (BP), Pinus koraiensis (PK), and Pinus spp. (PS, Pinus densiflora, Pinus rigida, and Pinus thunbergii). The carbon storage of tree biomass (TB), forest floor(FF), mineral soil (MS), and the total forest were quantified. Reclaimed sites were located in Gangwon-do, Gyeongsangbuk-do, and Jeollanam-do; reclamation was conducted at various times in each region. The carbon storage (ton C ha-1) in FF (BP: 3.31±0.59, PK: 3.60±0.93, PS: 4.65±0.92), MS (BP: 28.62±2.86, PK: 22.26±5.72, PS: 19.95±3.90), and the total forest(BP: 54.81±7.22, PK: 47.29±8.97, PS: 45.50±6.31) were lower than that of natural forests (NF). The carbon storage in TB was lower in BP (22.57±6.18) compared to NF, while those in PK(21.17±8.76) and PS (20.80±6.40) were higher than in NF. While there were no significant differences in the carbon storage of TB, FF, and the total forest among tree species, results from MS showed a significant difference among species. TB and the total forest carbon storages in all sites increased after reclamation. Soil pH and cation exchange capacity values in BP and PS were lower than in NF. Amounts of labile carbon, available phosphate, and microbial biomass carbon in reclaimed sites were less than half of NF. There are a number of methods that could increase the reclamation efficiency. Applications of lime or organic fertilizers, as well as tillage operations, may improve soil properties in reclaimed coal mines. Additionally, pruning and thinning would increase tree growth thereby increasing carbon storage.

Impacts of Elevated $CO_2$ on Algal Growth, $CH_4$ Oxidation and $N_2O$ Production in Northern Peatland (이탄습지에서 이산화탄소의 농도가 조류의 증식, 메탄 산화 및 아산화질소 생성에 미치는 영향)

  • Freeman, Chris;Kang, Ho-Jeong
    • Korean Journal of Ecology and Environment
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    • v.34 no.4 s.96
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    • pp.261-266
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    • 2001
  • Effects of elevated carbon dioxide ($CO_2$) on soil microbial processes were studied in a northern peatland. Intact peat cores with surface vegetation were collected from a northern Welsh fen, and incubated either under elevated carbon dioxide (700 ppm) or ambient carbon dioxide (350 ppm) conditions for 4 months. Higher algal biomass was found under the elevated $CO_2$ condition, suggesting $CO_2$ fertilization effect on primary production, At the end of the incubation, trace gas production and consumption were analyzed using chemical inhibitors. For methane ($CH_4$ ), methyl fluoride ($CH_3F$) was applied to determine methane oxidation rates, while acetylene ($C_2H_2$) blocking method were applied to determine nitrification and denitrification rates. First, we have adopted those methods to optimize the reaction conditions for the wetland samples. Secondly, the methods were applied to the samples incubated under two levels of $CO_2$. The results exhibited that elevated carbon dioxide increased both methane production (210 vs. $100\;ng\;CH_4 g^{-1}\;hr^{-1}$) and oxidation (128 vs. $15\;ng\;CH_4 g^{-1}\;hr^{-1}$), resulting in no net increase in methane flux. For nitrous oxide ($N_2O$) , elevated carbon dioxide enhanced nitrous oxide emission probably from activation of nitrification process rather than denitrification rates. All of these changes seemed to be substantially influenced by higher oxygen diffusion from enhanced algal productivity under elevated $CO_2$.

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Comparative Analysis of Technical System by Six Organic Rice Cultivation Type in the Southern Provinces (남부지방 벼 유기농법 유형별 투입기술체계 비교분석)

  • Ahn, In;Park, Joo-Seob;Kim, Sam-Hyun;Maeng, Woon-Young;Lee, In-Eae
    • Korean Journal of Organic Agriculture
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    • v.20 no.4
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    • pp.535-542
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    • 2012
  • This study was carried out from 2011 to 2012 in order to analyze the cultivation technology system by six organic rice cultivation types in the southern provinces for the purpose of utilizing organic rice farming guidelines. This surveys were conducted by site visit on 8 counties and 115 farms in southern area. Cultivation technology system by six organic rice cultivation types were cultivated by the principle of minimum input or non-input. cropping systems, a mixture of barley and rice, or rice green manure crops were grown. Cultivars were mixture of the local cultivars and Japanese varieties. Soil were managed by a self-manufactured compost, indigenous microorganisms and barley straw without any fertilization. Pest control was mainly practied by purchased eco-friendly organic materials or herbal medication residue and indigenous microbial self-manufactured. Weed was controled by snails and barley straw. In addition, considering the restore of a longtail pitching shrimp and grasshoppers, the fuction of environmental ecology of six organic rice cultivation type proved to be excellent all. Meanwhile, the productivity of the organic farming per 10a were the order of Life and environment > Natural circulation > Stevia > Ji jang > Art and nature > Taepyoung of Farming Methods, but the farmers received prices showed the opposite tendency. Simple profitablity did not show a big difference. But, the productivity of all type of the organic farming were lower then the conventional farming. Finally, If we want to conduct safety and easy farming, we can suggest stevia farming, Natural circulation farming and life and environmental farming out of 6 organic rice cultivation types.