• Animal cells and systems
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• v.1 no.4
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• pp.577-581
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• 1997

Species diversity of subcortical arthropod communities were assessed in two tropical regions and two temperate regions. In the tropics, communities of subcortical arthropods were more diverse in La Selva, Costa Rica, than on Barro Colorado Island, Panama. Costa Rican communties yielses higher values of both Shannon and Simpson diversity indices than Panamanian communities. Compared to Panamanian communities, Costa Rican ones supported higher measures of both species richness and evenness. Between the two temperate regions, communities of subcortical arthropods in Korea scored consistently higher values of both Shannon and Simpson indices than the ones in eastern Massachusetts, U.S.A. When individual diversity components were compared, however, Korean communities yielded exceptionally high evenness measures but lower species richness than the communities in the U.S.A. Unusually high evenness values of Korean subcortical arthropods were due to extremely low population densities of all component species.

• Journal of Forest and Environmental Science
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• v.26 no.1
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• pp.1-7
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• 2010

Species diversity is one of the most important specifications of biological societies. Diversity of organisms, measurement of variety and examination of those hypotheses that are about reasons of diversity are such as affairs that have been desired by the ecologists for a long time. In this research, diversity of plant species in forest region, numbers of 60 sample plots in 256.00 square meters have been considered in random - systematic inventory was considered. In each sample plot, four micro-plots in 2.25 square meters in order to study on herbal cover, were executed that totally 240 micro-plots were considered. At each plot six diversity indices in relation to physiographic factors (slope, geographical aspect and altitude from the sea level) were studied. The results indicate that species diversity is more in the northern direction and also species diversity in slops less than 30% has the most amounts. Factor of altitude from the sea level did not have meaningful relation with species diversity. Through study on correlation of the numbers of species in sample plots with indices and also process and role of indices in different processors of analysis, Simpson's reciprocal index was suggested as suitable index in this type of studies.

• Journal of Microbiology and Biotechnology
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• v.27 no.12
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• pp.2089-2093
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• 2017

The past decades have been a golden era during which great tasks were accomplished in the field of microbiology, including food microbiology. In the past, culture-dependent methods have been the primary choice to investigate bacterial diversity. However, using culturein-dependent high-throughput sequencing of 16S rRNA genes has greatly facilitated studies exploring the microbial compositions and dynamics associated with health and diseases. These culture-independent DNA-based studies generate large-scale data sets that describe the microbial composition of a certain niche. Consequently, understanding microbial diversity becomes of greater importance when investigating the composition, function, and dynamics of the microbiota associated with health and diseases. Even though there is no general agreement on which diversity index is the best to use, diversity indices have been used to compare the diversity among samples and between treatments with controls. Tools such as the Shannon-Weaver index and Simpson index can be used to describe population diversity in samples. The purpose of this review is to explain the principles of diversity indices, such as Shannon-Weaver and Simpson, to aid general microbiologists in better understanding bacterial communities. In this review, important questions concerning microbial diversity are addressed. Information from this review should facilitate evidence-based strategies to explore microbial communities.

• Journal of Forest and Environmental Science
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• v.37 no.4
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• pp.292-303
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• 2021

Studies that relate the structure of tropical regrowth vegetation to soil properties are generally lacking in the literature. This study proposes three indices for assessing the structural regeneration of secondary forests. They are: (1) the tree diameter class, (2) the plant life form and (3) the woody/herbaceous plants ratio indices. They were applied to assess the regeneration status of forest regrowth vegetation (aged 1-10 years), derived savanna regrowth vegetation in south western Nigeria, and to secondary forests in different stages of succession in Columbia and Venezuela, Bolivia, Mexico in South and Central America and semi-arid savanna in Ethiopia and seasonal deciduous forest successional stages in India. In all the cases, the indices increased with increasing age of regrowth vegetation and hence, with increasing structural complexity of regenerating vegetation. The tree diameter class index increased from 32.1% in a 9-year secondary forest to 69.0% in an 80-year-old secondary forest in Columbia and Venezuela and from 0.4% in a 1-year fallow to 20.9% in 10-year regrowth vegetation in southwestern Nigeria. In semi-arid savanna in northern Ethiopia, the woody/herbaceous plants ratio index increased from 18.1% in a 5-year protected grazing enclosure to 75.1% in 15-year protected enclosure, relative to the status of 20-year enclosure. The indices generally had correlations of 0.6-0.90 with species richness and Simpson's/Margalef's species diversity, implying that they are appropriate measures of ecosystem development over time. The proposed indices also had strong and positive correlations with soil organic carbon and nutrients. They are therefore, significant indicators of fertility status.

• The Korean Journal of Soil Zoology
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• v.8 no.1_2
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• pp.32-36
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• 2003

Diversity and altitudinal distribution of the ground-beetles including Silphidae were investigated on Mt. Gabjangsan, Sangju city, Korea. Of the collected 10 species belonging to 3 families, Synuchus cycloderus was the most abundant species and S. nitidus was the relatively more abundant than the other species. The highest number collected was at alto 700 m. Simpson dominance index was 0.66 the highest at 700 malt., whereas, 0.47 at alto 800 m, was the lowest. The highest Simpson diversity index was noticed at alto 800 m (0.53). Also, seasonal indices of diversity and dominance of Simpson and Menhinick index were provided.

• Journal of Forest and Environmental Science
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• v.35 no.3
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• pp.159-172
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• 2019

Madhupur National Park (MNP) is one of the last remaining patches of old-growth natural Sal forest left in Bangladesh where the forest is tropical moist deciduous type. A study was revealed to assess the tree species diversity and composition in this area. For determining tree species the study was conducted through extensive random quadrat survey methods with $20m{\times}20m$ sized plots. Results of the study indicated that there were 139 tree species belonging to 100 genera and 40 families. The quadrat survey assessed the basal area, stem density, diversity indices and importance value index of the tree species having ${\geq}5cm$ D.B.H (Diameter at Brest Height). The basal area and stem density of the tree species were $20.689{\pm}1.08m^2/ha$ and $1412.93{\pm}64.27stem\;ha^{-1}$ while, diversity indices, i.e. Shannon-Wiener's diversity, Simpson's evenness, Margalef's species richness and Pielou's dominance indices indicated poor diversity in comparison to that of other PAs (Protected Areas) in South-Eastern region of Bangladesh. The structural composition based on height and D.B.H through reverse-J shaped curve indicated higher regeneration and recruitment but removal of trees of large growth classes. Sal (Shorea robusta) was the most dominant tree species that accounts 75% of the total tree individuals in the natural forest patches. However, some associates of Sal, i.e. Bhutum (Hymenodictyon orixensis), Gadila (Careya arborea), and Kusum (Schleichera oleosa) etc. were seemed to be rare in MNP.

• Research in Plant Disease
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• v.18 no.4
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• pp.381-386
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• 2012

Nematode fauna in Dokdo island was investigated for two years between 2008 and 2009. Population density and biomass were $239,500m^2$ (26,000-836,000) and $103.9mg/m^2$ (3.0-388.6), respectively. Total of 31 species of nematodes were identified : Acrobeloides is the most important genus with prominence value (PV) of 117.8, followed by Rhabditidae (PV = 81.9), Prismatolaimus (PV = 39.0), and Aphelenchoides (PV = 31.4). Among feeding group, bacteriovorus nematode composed 77% of density and 62% of biomass followed by plant-parasitic and fungivorus nematodes. A species of Pratylenchus having distinctive tail terminus is under study as a new species. Biological indices, Shannon and Wiener index (2.46), Simpson's diversity index (0.86), Species evenness (0.73), Species richness (1.30) indicate that nematode fauna in Dokdo island is diverse and unique. This study may give a general idea of nematode fauna at the Dokdo island.

• Korean Journal of Weed Science
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• v.2 no.1
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• pp.20-30
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• 1982

A field experiment was conducted in 1981 at the Crop Experiment Station, Suweon, Korea, in machine transplanted paddy rice field, to study the effectiveness of single herbicide, mixture, and systematic application of herbicides on diversity of weed control spectrum. The rice variety planted was Taebaegbyeo, Indica ${\times}$ Japonica cross bred. Experimental field was dominated by Echinochtoa crusgalli, Eleocharis kuroguwai, and Scirpus hotarui, and importance values based on dry weight of these weeds were 89%, 5%, and 3%, respectively. The mixture or systematic treatments of herbicide were generally more effective than single herbicide applications on weed control. Coefficients of similarity based on floristic composition after herbicide application between Perfluidone (5G) and Chloromethoxynil (7G), and between Pertluidone (5G) and Bifenox (7G), and between Perfluidone (5G) and three types of Butachlor (6G) were low, and these sets seemed to be a good mixture herbicide in paddy fields. While, Perfluidone (5G) had low coefficient of similarity with other single herbicides tested. The information on coefficient of similarity could be used as parameter for selecting herbicides to increase the efficiency of herbicidal performance. Simpson's indices from Butachlor (3.5G)/SL-49 (7G), Butachlor (3.5G)/Pyrazolate (6G), and Perfluidone (5G) treatments were high, and these herbicide treatments tended to the weed community type simplified, while the indices from Perfluidone (5G) + Chloromethoxynil (7G), Butachlor (6G) fb Perftuidone (5G), and Butachlor (4G)/Naproanilide (6G) treatments were low, and these herbicide treatments caused to the community type diversified in terms of floristic composition.

• Journal of Life Science
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• v.32 no.10
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• pp.803-811
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• 2022

Despite the importance of traditional Korean fermented foods, little is known about the microbial communities and diversity of fermented soy products. To gain insight into the unexplored microbial communities of both Doenjang (DJ) and Ganjang (GJ) that may contribute to the fermentation in Korean traditional foods, we carried out next-generation sequencing (NGS) based on the V3-V4 region of 16S rDNA gene analysis. The alpha diversity analysis results revealed that both the Shannon and Simpson diversity indices were significantly different between the two groups, whereas the richness indices, including ACE, CHAO, and Jackknife, were not significant. Firmicutes were the most dominant phylum in both groups, but several taxa were found to be more abundant in DJ than in GJ. The proportions of Bacillus, Kroppenstedtia, Clostridium, and Pseudomonas and most halophiles and halotolerant bacteria, such as Tetragenococcus, Chromohalobacter, Lentibacillus, and Psychrobacter, were lower in DJ than in GJ. Linear discriminant effect size (LEfSe) analysis was carried out to discover discriminative functional biomarkers. Biomarker discovery results showed that Bacillus and Tetragenococcus were identified as the most important features for the classification of subjects to DJ and GJ. Paired-permutational multivariate analysis of variance (PERMANOVA) further revealed that the bacterial community structure between the two groups was statistically different (p=0.001).

• The Korean Journal of Ecology
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• v.18 no.4
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• pp.441-449
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• 1995

The abundance of coarse woody debris (CWD) has been hypothesized to increase niche for forest dwelling insectivores, concentration of nutrients, and the diversity of invertebrates. However, no abjective assessment based on replication in the field has yet been done. this study was carried out to test the relationships between invertebrate availability and the abundance of four insectivores (Sorex trowbridgii, S. vagrans, S. monticolus and Neurotrichus gibbsii) in western Washington, USA. Pitfall traps were used to determine abundance and diversity of invertebrates. Abundance of insectivores was not different between habitats except for S. vagrans which was more abundant in habitats with low amounts of CWD than in habitats with high amounts of CWD. Simpson’s diversity index computed for invertebrates did not differ between habitats. There were no significant relationships between the diversity indices of invertebrates and the abundance of shrews. Shrew abundance and the Coleoperan beetles also did not show any significant relationship. The results suggested insectivores might select a wide range of prey items in addition to surface-active invertebrates.