• Title/Summary/Keyword: Similarity matrix

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Analysis of Genetic Variation of Perilla frutescens var. crispa Germplasm Using RAPD (RAPD를 이용한 차조기(Perilla frutescens var. crispa) 유전자원의 유전적 변이 분석)

  • Kim, Hyeun-Kyeung;Cho, Young-Son;Yang, Jae-Wan;Choi, Young-Whan;Kang, Jun-Soon;Lee, Yong-Jae;Son, Beung-Gu
    • Journal of Life Science
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    • v.20 no.1
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    • pp.119-123
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    • 2010
  • Genetic variations of Chajogi (Perilla frutescens var. crispa) germplasms were investigated by using RAPD markers. Twenty-two Perilla frutescens var. crispa lines collected from various locations were subjected to RAPD analysis using 80 primers. Among them, only 22 primers showed polymorphic bands and these 22 primers provided a total of 224 bands consisting of 127 polymorphic and 97 monomorphioc bands. The polymorphic bands were subjected to phylogenetic analysis using the UPGMA method. From UPGMA, similarity co-efficiency of 22 Chajogi lines ranged from 0.72 to 0.94. The dendrogram of 22 lines obtained through the UPGMA method resulted in two groups (one major group and one minor group). Although the two groups were roughly consistent with growth phenotypes (period of flowering, period of maturity, stem length, number of branches, number of nodes, number of flower clusters and number of ovaries) in detail, much inconsistency also was present

Community Structure of Fisheries Resources Caught by Dredge in the Uljin Marine Ranching Area, Korea (울진바다목장에서 형망으로 어획된 수산자원의 군집구조)

  • Yoon, Byoung Sun;Park, Jeong-Ho;Yoon, Sang Chul;Yang, Jae Hyeong;Sohn, Myoung Ho
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.47 no.6
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    • pp.935-944
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    • 2014
  • To elucidate the variation of species composition, biomass and size distribution of fishery resource in the Uljin marine ranching area was investigated at the 4 stations from 2009 to 2010 based on the dredge sampling. During the survey period, a total of 41 fishery resource species were sampled with a mean density of $2,554,633\;ind./km^2$ and mean biomass was $32,946kg/km^2$. A total 36 fishery resource species were sampled with a mean density of $3,198,793\;ind./km^2$ and mean biomass $41,177kg/km^2$ in 2009 and it were sampled a total 31 species, mean $1,910,473kg/km^2$ and $24,716kg/km^2$ in 2010. The major individual-dominant species, occupying over 1% of total individuals, were Gomphina veneriformis (2,491,818 ind., 82.2%), Umbonium costatum (221,973 ind., 8.7%), Mactra chinensis (49,879 ind., 2.0%), Glossaulax didyma hayashii (49,879 ind., 1.9%), Blepharipoda liberate (37,714 ind., 1.5%) and Paguridae spp. (27,266 ind., 1.1%). The major biomass-dominant species, occupying over 1% of total biomass, were G. veneriformis (25,124 kg, 76.3%), G. didyma hayashii (2,596 kg, 7.9%), M. chinensis (2,024 kg, 6.1%), Ovalipes punctatus (921 kg, 2.8%) and Glossaulax didyma didyma (567 kg, 1.7%). From the cluster analysis based on Bray-Curtis similarity matrix of fourth root transformed data of species number and individuals was divided into 2 different groups of the fishery resource community (Group A-St.1, Group B-Sts. 2, 3, 4). The 2009 and 2010 mean Shell length (mm) of G. veneriformis was 37.73 mm, 29.76 mm and M. chinensis was 62.03 mm, 44.94 mm, respectively.

An ESDA Tool for Time-series Spatial Association (지역분석을 위한 시계열 공간연관성 탐색도구)

  • Ahn Jae-Seong;Park Key-Ho;Lee Yang-Won
    • Spatial Information Research
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    • v.14 no.1 s.36
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    • pp.163-176
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    • 2006
  • The concept of 'spatial association' explains spatial distribution pattern of geographical phenomenon based on similarity with neighborhoods, as in the Tobler's Law of Geography: 'Everything is related to everything else, but near things are more related than distant things.' In this study, we develop a time-series exploratory analysis tool for discovering temporal patterns of spatial association by combining spatial statistics and geo-visualization, and thus present a possibility to support spatial decision-making process. As for the spatial proximity weight matrix indispensable to measuring global and local spatial association, we employ a variety of flexible weighting schemes using geometric characteristics of areal unit. In addition, we renovate the existing visualization methods for more effective understanding of the procedures and results of time-series analysis on spatial association: for instance, temporal parallel coordinate plot with box plot, animated map for spatial association, and 3D Moran scatterplot. The feasibility of our system is verified by time-series analysis experiments on the spatial association of land price fluctuation rate for all administrative units in Korea, $1995{\sim}2004$.

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Knowledge Structure of Cognitive Behavioral Therapy Studies in Korea: Co-word Analysis (국내 인지행동치료 연구의 지식구조: 동시출현단어 분석)

  • Kim, Do-Hee;Kim, Hyeon-Jin;An, Da-Hye
    • Journal of Digital Convergence
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    • v.17 no.12
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    • pp.509-521
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    • 2019
  • The purpose of this study is to examine the patterns of the keywords in journals in the field of Cognitive Behavioral Therapy (CBT) to identify the knowledge structure of CBT studies in Korea. To compare CBT studies from Korea and abroad, 234 articles (2008-2019) published on "Cognitive Behavior Therapy in Korea" and 2,316 articles (1977-2019) published on "Cognitive Therapy and Research" were collected. The data were analyzed using NetMiner 4.3. The co-word analysis was done by calculating the cosine similarity matrix of major keywords, followed by visualizing the network. The results of this study identified the main interests of Korean CBT scholars, and categorized the knowledge structure of CBT in Korea into 9 research areas: "scale validation"; "perfectionism and entrapment"; "cognitive, emotional, and relationship characteristics of schizophrenic patients"; "cognitive characteristics and treatment of borderline personality disorder and depression/bipolar disorder patients"; "adaptation and psychological health"; "cognitive characteristics and treatment of patients with social anxiety disorder"; "causes and co-morbidities of depression"; "acceptance and commitment therapy"; and "understanding and the treatment of binge eating disorder patients." This study is meaningful in that it has reviewed the accumulated knowledge in the CBT field in Korea for the past 11 years, and suggests future tasks for development to improve the standards of CBT practice.

Phylogeny of Ganoderma Based on the Restriction Enzyme Analysis of Mitochondrial DNA (미토콘드리아 DNA의 제한효소 분석법에 의한 영지의 계통분류)

  • Hong, Soon-Gyu;Jung, Hack-Sung
    • Korean Journal of Microbiology
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    • v.32 no.4
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    • pp.245-251
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    • 1994
  • Ten strains of 7 species from the genus Ganoderma, G. lucidum ATCC 64251, FP-103561-T, and ES70701, G. applanatum ATCC 44053 and FP-57035-T. G. lobatum ATCC 42985, G. resinaceum ATCC 52416, G. subamboinense var. laevisporum ATCC 52420, G. meredithae ATCC 64492, and G. microsporum ATCC 76024, were studied to discuss their phylogenetic relationships by utilizing restriction fragment length polymorphisms (RFLPs) of mitochondrial DNAs (mtDNAs). Six restriction enzymes, BamHI, BglII, EcoRI, HindIII, PvuII, and XbaI which digested mtDNAs into adequate numbers of restriction fragments for cluster analysis, were used in this study. Restriction profiles of strains for each restriction enzyme were treated as analysis characters to calculate similarity coefficients, which were converted into nucleotide sequence divergence values whose mean values were then arranged in a matrix table. This table was utilized for a phylogenetic analysis using the Neighborjoining method of the PHYLIP package to construct phylogenetic tree. Three strains of G. lucidum and two strains of G. applanatum exhibited different lineages each but one of G. applanatum strains showed a close relationship with G. lobatum, which reflected the species complexity of these species whose strains were phenotypically indistinguishable but genetically distinct. The present results suggest that the natural classification of Ganoderma needs to be considered from the viewpoints of molecular biology-based systematics as well as morphological classifications and cultural identifications for better phylogenetic conclusions.

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A Three-Dimensional Galerkin-FEM Model with Density Variation (밀도 변화를 포함하는 3차원 연직함수 전개모형)

  • 이호진;정경태;소재귀;강관수;정종율
    • Journal of Korean Society of Coastal and Ocean Engineers
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    • v.8 no.2
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    • pp.123-136
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    • 1996
  • A three-dimensional Galerkin-FEM model which can handle the temporal and spatial variation of density is presented. The hydrostatic approximation is used and density effects are included by means of conservation equation of heat and the equation of state. The finite difference grids are used in the horizontal plane and a set of linear-shape functions is used for the vertical expansion. The similarity transform is introduced to solve resultant matrix equations. The proposed model was first applied to the density-driven circulation in an idealized basin in the presence of the heat exchange between the air and the sea. The advection terms in the momentum equation were ignored, while the convection terms were retained in the heat equation. Coefficients of the vertical eddy viscosity and diffusivity were fixed to be constant. Calculation in a non-rotating idealized basin shows that the difference in heat capacity with depth gives rise to the horizontal gradient of temperature. Consequently, there is a steady new in the upper layer in the direction of increasing depth with compensatory counter flow .in the lower layer. With Coriolis force, geostrophic flow was predominant due to the balance between the pressure gradient and the Coriolis force. As a test in region of irregular topography, the model is applied to the Yellow Sea. Although the resultant flow was very complex, the character of the flow Showed to be geostrophic on the whole.

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A News Video Mining based on Multi-modal Approach and Text Mining (멀티모달 방법론과 텍스트 마이닝 기반의 뉴스 비디오 마이닝)

  • Lee, Han-Sung;Im, Young-Hee;Yu, Jae-Hak;Oh, Seung-Geun;Park, Dai-Hee
    • Journal of KIISE:Databases
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    • v.37 no.3
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    • pp.127-136
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    • 2010
  • With rapid growth of information and computer communication technologies, the numbers of digital documents including multimedia data have been recently exploded. In particular, news video database and news video mining have became the subject of extensive research, to develop effective and efficient tools for manipulation and analysis of news videos, because of their information richness. However, many research focus on browsing, retrieval and summarization of news videos. Up to date, it is a relatively early state to discover and to analyse the plentiful latent semantic knowledge from news videos. In this paper, we propose the news video mining system based on multi-modal approach and text mining, which uses the visual-textual information of news video clips and their scripts. The proposed system systematically constructs a taxonomy of news video stories in automatic manner with hierarchical clustering algorithm which is one of text mining methods. Then, it multilaterally analyzes the topics of news video stories by means of time-cluster trend graph, weighted cluster growth index, and network analysis. To clarify the validity of our approach, we analyzed the news videos on "The Second Summit of South and North Korea in 2007".

The Study on Recent Research Trend in Korean Tourism Using Keyword Network Analysis (키워드 네트워크를 이용한 국내 관광연구의 최근 연구동향 분석)

  • Kim, Min Sun;Um, Hyemi
    • Journal of the Korea Academia-Industrial cooperation Society
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    • v.17 no.9
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    • pp.68-73
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    • 2016
  • This study was conducted to identify trends and knowledge structures associated with recent trends in Korean tourism from 2010 to 2015 using keyword data. To accomplish this, we constructed a network using keywords extracted from KCI journals. We then made a matrix describing the relationships between rows as papers and columns as keywords. A keyword network showed the connectivity of papers that have included one or more of the same keywords. Major keywords were then extracted using the cosine similarity between co-occurring keywords and components were analyzed to understand research trends and knowledge structure. The results revealed that subjects of tourism research have changed rapidly and variously. A few topics related to 'organization-employee' were major trends for several years, but intrinsic and extrinsic factors have been further subdivided and employees of specific fields have been targeted as subjects of research. Component analysis is useful for analyzing concrete research topics and the relationships between them. The results of this study will be useful for researchers attempting to identify new topics.

Analysis of ICT Education Trends using Keyword Occurrence Frequency Analysis and CONCOR Technique (키워드 출현 빈도 분석과 CONCOR 기법을 이용한 ICT 교육 동향 분석)

  • Youngseok Lee
    • Journal of Industrial Convergence
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    • v.21 no.1
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    • pp.187-192
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    • 2023
  • In this study, trends in ICT education were investigated by analyzing the frequency of appearance of keywords related to machine learning and using conversion of iteration correction(CONCOR) techniques. A total of 304 papers from 2018 to the present published in registered sites were searched on Google Scalar using "ICT education" as the keyword, and 60 papers pertaining to ICT education were selected based on a systematic literature review. Subsequently, keywords were extracted based on the title and summary of the paper. For word frequency and indicator data, 49 keywords with high appearance frequency were extracted by analyzing frequency, via the term frequency-inverse document frequency technique in natural language processing, and words with simultaneous appearance frequency. The relationship degree was verified by analyzing the connection structure and centrality of the connection degree between words, and a cluster composed of words with similarity was derived via CONCOR analysis. First, "education," "research," "result," "utilization," and "analysis" were analyzed as main keywords. Second, by analyzing an N-GRAM network graph with "education" as the keyword, "curriculum" and "utilization" were shown to exhibit the highest correlation level. Third, by conducting a cluster analysis with "education" as the keyword, five groups were formed: "curriculum," "programming," "student," "improvement," and "information." These results indicate that practical research necessary for ICT education can be conducted by analyzing ICT education trends and identifying trends.

A Study of Computational Literature Analysis based Classification for a Pairwise Comparison by Contents Similarity in a section of Tokkijeon, 'Fish Tribe Conference' (컴퓨터 문헌 분석 기반의 토끼전 '어족회의' 대목 내용 유사도에 따른 이본 계통 분류 연구)

  • Kim, Dong-Keon;Jeong, Hwa-Young
    • The Journal of the Korea Contents Association
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    • v.22 no.5
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    • pp.15-25
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    • 2022
  • This study aims to identify the family and lineage of a part of a "Fish Tribe Conference" in the section Tokkijeon by utilizing computer literature analysis techniques. First of all, we encode the classification for a pairwise comparison's type of each paragraph to build a corpus, and based on this, we use the Hamming distance to calculate the distance matrix between each classification for a pairwise comparison's. We visualized classification for a pairwise comparison's clustering pattern by applying multidimensional scale method, and hierarchical clustering to explore the characteristics of the 'fish family' line and lineage compared to the existing cluster analysis study on entire paragraphs of "Tokkijeon". As a result, unlike the cluster analysis of the entire paragraph of "Tokkijeon", which consists of six categories, the "Fish Tribe Conference" section has five categories and some classification for a pairwise comparison's accesses. The results of this study are that the relative distance between Yibon was measured and systematic classification was performed in an objective and empirical way by calculation, and the characteristics of the line of the fish family were revealed compared to the analysis of the entire rabbit exhibition.