• 제목/요약/키워드: Sequence Selection

검색결과 479건 처리시간 0.031초

Prevalence of negative frequency-dependent selection, revealed by incomplete selective sweeps in African populations of Drosophila melanogaster

  • Kim, Yuseob
    • BMB Reports
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    • 제51권1호
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    • pp.1-2
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    • 2018
  • Positive selection on a new beneficial mutation generates a characteristic pattern of DNA sequence polymorphism when it reaches an intermediate allele frequency. On genome sequences of African Drosophila melanogaster, we detected such signatures of selection at 37 candidate loci and identified "sweeping haplotypes (SHs)" that are increasing or have increased rapidly in frequency due to hitchhiking. Based on geographic distribution of SH frequencies, we could infer whether selective sweeps occurred starting from de novo beneficial mutants under simple constant selective pressure. Single SHs were identified at more than half of loci. However, at many other loci, we observed multiple independent SHs, implying soft selective sweeps due to a high beneficial mutation rate or parallel evolution across space. Interestingly, SH frequencies were intermediate across multiple populations at about a quarter of the loci despite relatively low migration rates inferred between African populations. This invokes a certain form of frequency-dependent selection such as heterozygote advantage. At one locus, we observed a complex pattern of multiple independent that was compatible with recurrent frequency-dependent positive selection on new variants. In conclusion, genomic patterns of positive selection are very diverse, with equal contributions of hard and soft sweeps and a surprisingly large proportion of frequency-dependent selection in D. melanogaster populations.

비용절감형 단상-삼상 전력변환기 구조의 해석 및 제어 (Analysis and Control of Cost-Effective Topologies for Single Phase to Three Phase Power Converter)

  • 이해춘;박태열;김기택
    • 산업기술연구
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    • 제19권
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    • pp.217-226
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    • 1999
  • A single phase to three phase power converter with cost effective and simple structure is proposed. The converter consists of rectifier and inverter. The rectifier is composed of a half wave rectifier, a dc link capacitor, and a current limiting inductor, and the inverter is of only two switches with PWM control. For negative sequence operation the inverter output voltage leads the line input by $60^{\circ}$, and for positive sequence operation the inverter output voltage leads by $60^{\circ}$. We can see that positive sequence operation shows higher output voltage, slight harmonic distortion(2%), and better performances such as high efficiency and high power factor. A mathematical model for system analysis is provided, and specifications for selection and control scheme both for start-up and for steady state are analyzed. comparison and operational limits of positive and negative sequence operation are performed, and simulations and experiments are executed to verify the proposed.

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SSR-Primer Generator: A Tool for Finding Simple Sequence Repeats and Designing SSR-Primers

  • Hong, Chang-Pyo;Choi, Su-Ryun;Lim, Yong-Pyo
    • Genomics & Informatics
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    • 제9권4호
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    • pp.189-193
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    • 2011
  • Simple sequence repeats (SSRs) are ubiquitous short tandem duplications found within eukaryotic genomes. Their length variability and abundance throughout the genome has led them to be widely used as molecular markers for crop-breeding programs, facilitating the use of marker-assisted selection as well as estimation of genetic population structure. Here, we report a software application, "SSR-Primer Generator " for SSR discovery, SSR-primer design, and homology-based search of in silico amplicons from a DNA sequence dataset. On submission of multiple FASTA-format DNA sequences, those analyses are batch processed in a Java runtime environment (JRE) platform, in a pipeline, and the resulting data are visualized in HTML tabular format. This application will be a useful tool for reducing the time and costs associated with the development and application of SSR markers.

주파수 변조를 이용한 MR DANTE 고속 영상법 (DANTE Fast MR imaging Using Frequency Modulation)

  • 노용만;정성택;홍인기;조장희
    • 대한의용생체공학회:학술대회논문집
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    • 대한의용생체공학회 1995년도 춘계학술대회
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    • pp.42-44
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    • 1995
  • The original DANTE sequence and its variations have limitation in excitation profile (a sinc function-like excitation) due to the finite duration of the DANTE pulsetrain. This sinc function-like selection profile excites only a small fraction of the spins in the pixel thereby results in poor signal to noise ratio (only about ${\sim}1%$ of normal MR imaging sequence). Therefore, this poor signal to noise ratio (SNR) has been the main drawback of the original DANTE sequence. To improve the signal to noise ratio, phases of individual RF pulses in the DANTE pulse train were modulated so that more spins in the object were excited ($1{\sim}3$). We have introduced a new FM (Frequency Modulation) DANTE sequence and analyzed the signal intensity and excitation profiles.

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비접지 배전계통에서 영상전류 위상 비교에 의한 고장구간 검출 방법 (A Fault Section Detection Method for Ungrounded System Based on Phase Angle Comparison of Zero-Sequence Current)

  • 양하;최면송;이승재
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 2007년도 제38회 하계학술대회
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    • pp.31-32
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    • 2007
  • In this paper, a fault section detection method is proposed for ungrounded system in the case of a single line-to-ground fault. A conventional method is used for faulted feeder selection according to the angular relationship between zero-sequence currents of the feeders and zero-sequence voltage of the system. Fault section detection is based on the comparison of phase angle of zero-sequence current. Proposed method has been testified in a demo system by Matlab/Simulink simulations. Based on Distribution Automation System(DAS), Feeder Remote Terminal Unit(FRTU) is used to collect those necessary data, at present a demo system is under developing using Manufacturing Message Specification (MMS) in IEC61850 standard.

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Analysis of Leuconostoc citreum strains using multilocus sequence typing

  • Sharma, Anshul;Kaur, Jasmine;Lee, Sulhee;Park, Young-Seo
    • Food Science and Biotechnology
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    • 제27권6호
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    • pp.1755-1760
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    • 2018
  • The objective of this study was to perform genetic diversity analysis of 13 strains isolated from South Korean foods by multilocus sequence typing (MLST). For typing, seven housekeeping loci (atpA, dnaA, dnaK, gyrB, pheS, pyrG, and rpoA) were selected, amplified and analyzed. Fifty-one polymorphic sites varying from 1 to 22 in each species were identified. Thirteen sequence types were generated with allele numbers ranged from 2 to 10. The overall relationship between strains was assessed by unweighted pair group method with arithmetic mean dendrogram and minimum spanning tree. In addition, combined spits tree analysis revealed intragenic recombination. No clear relationship was observed between the isolation sources and strains. The developed MLST scheme enhanced our knowledge of the population diversity of Leu. citreum strains and will be used further for the selection of industrially important strain.

통합적인 공정순서와 가공기계 선정을 위한 유전 알고리즘 (Genetic Algorithm for Integrated Process Sequence and Machine Selection)

  • 문치웅;서윤호;이영해;최경현
    • 한국경영과학회:학술대회논문집
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    • 대한산업공학회/한국경영과학회 2000년도 춘계공동학술대회 논문집
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    • pp.405-408
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    • 2000
  • The objective of this paper is to develop a model to integrate process planning and resource planning through analysis of the machine tool selection and operations sequencing problem. The model is formulated as a travelling salesman problem with precedence relations. To solve our model, we also propose an efficient genetic algorithm based on topological sort concept.

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EMS 운용을 위한 상정사고 선정 (Contingency Selection For EMS Operation)

  • 김정년;백영식
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 1996년도 추계학술대회 논문집 학회본부
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    • pp.175-178
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    • 1996
  • Power system is becomming more and more complex and large. So system is stressed increasingly. This paper presents a method to select contingency ranking in power systems for EMS operation. Firstly, the proposed method is applied line outage using Thevenin equivalent circuit. Secondly, Contingency harmful to system is selected by loss variation between base case and fault. Thirdly, this paper prescribed simulated line sequence. Therefore this algorithm shows higher computation speed and effective memory use.

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지능로봇을 위한 행동선택 및 학습구조 (An Action Selection Mechanism and Learning Algorithm for Intelligent Robot)

  • 윤영민;이상훈;서일홍
    • 대한전기학회:학술대회논문집
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    • 대한전기학회 2004년도 학술대회 논문집 정보 및 제어부문
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    • pp.496-498
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    • 2004
  • An action-selection-mechanism is proposed to deal with sequential behaviors, where associations between some of stimulus and behaviors will be learned by a shortest-path-finding-based reinforcement team ins technique. To be specific, we define behavioral motivation as a primitive node for action selection, and then sequentially construct a network with behavioral motivations. The vertical path of the network represents a behavioral sequence. Here, such a tree fur our proposed ASM can be newly generated and/or updated. whenever a new sequential behaviors is learned. To show the validity of our proposed ASM, some experimental results on a "pushing-box-into-a-goal task" of a mobile robot will be illustrated.

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자동공정설계(自動工程設計)에서 가공작업(加工作業)의 선정(選定) 및 순서결정(順序決定) 기법(技法)의 개발(開發) (An Automated Process Selection and Sequencing Method in Computer-Aided Process Planning)

  • 조규갑;김인호;노형민
    • 대한산업공학회지
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    • 제15권2호
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    • pp.45-55
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    • 1989
  • This paper deals with development of a computer-aided process selection and sequencing technique and its software for metal cutting processes of rotational parts. The process selection procedure consists of selection for proper machining operations and machine tools suitable for the selected operations. Machining operations are selected based on machining surface features and machine tools are selected by employing a conversion table which converts machining operations into machine tools. The process sequence is determined by the proper manipulation of the precedence relation matrix. A computer program for the proposed technique is developed by using Turbo-Pascal on IBM PC/AT compatible system. The proposed technique works well to real problems.

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